Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013197

Physical Location & Seq

Genomic Coordinates Forward (+)

67051834 .. 67053312

Gene Structure 1479 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27807

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGAATCCCAAATTTCAGAAAAATTTGGGTTATTCGCGTAATATCAAACACTCCGGCGGAGGTAATTCCAATTTTTCGCCAGTTGATAAACCACGCTCAAGGGTTTACACTGAAACACATACGCACACTAACAGAATGGAAGAAGGCGGCAAGCAACTATGCGAGGCGGCGAAGAACGGCGACGCCGAGAAGCTCAAAACTCTAATAGACTCCGGAGCCGACGTGTCGTACTTCGACGGCGAAGGCCTCACTCCGCTTATGCACGCAGCCCAGCTTGGCCACGCCGCCGCAGTGAAGGCCCTTCTGGAAGCTGGTGCCCCCTGGAACGCTCTCAACCCTTCCAATATCTCCGCCGGCGATTTGGCCATGAACGCCGGTCACGAGGAAGCCTACGAGCTCCTCCTCAATGCCGGGATTCAAGCTGAGTTGGTACTGGGAACGATTGCTAGGAGAGAAAATAACAATGGGGAGTGGAATGATGATTACTTGGAGGATAGAGTGAGCTTTAGTGAGGATAAGTTGATGGATGCCGAAAATAAGGCGGTGATGATGGCTTGGGAGAATCCATTAATGGAGGCGCATGCGAAAGCTGTGTGCTCAAATGGGGGTCATATACTGAATATTGGATTTGGGATGGGTCTGGTGGACACTGCCATTCAGAAATACTCCCCTGCTTCGCATACTATCGTTGAGGCTCACCCTAATGTTTTCCAGCGTATGCTTGATGACGGTTGGGATAAGAAGGAAAATGTGACTATAATTTGTGGCCGGTGGCAGGATGTTGTGCATGAACTTCCGACTTTTGATGGGATTTTCTTTGATACGTATGGAGAGTATTATGATGACCTGAGAGAGTTTCACCAGCAACTTCCGGTATTGCTGAAGCCCGGGGGAATCTACTCTTTCTTCAATGGACTTTGTGGAGGTAATGCATTCTTCCATGTAGTTTACTGTCACATAGTTCAGCTAGAGCTTCAGAGTTTGGGTTATTCTACACAGTTCATTCCCTTGCCTGTTAAGGATTGCTTAGGAGAACAAGTTTGGGAGGGTGTCAAACAGAAGTATTGGCAGCTTGATACATATTACCTCCCTGTATGTCAGTCCTTGGAGGATTCAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006139 GO:0006464 GO:0006479 GO:0006520 GO:0006575 GO:0006725 GO:0006732 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009116 GO:0009119 GO:0009987 GO:0016273 GO:0016274 GO:0016740 GO:0016741 GO:0017144 GO:0018193 GO:0018195 GO:0018216 GO:0019538 GO:0019702 GO:0019752 GO:0022613 GO:0032259 GO:0034641 GO:0035246 GO:0036211 GO:0042254 GO:0042278 GO:0043170 GO:0043412 GO:0043414 GO:0043436 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044464 GO:0046128 GO:0046483 GO:0046498 GO:0046500 GO:0051186 GO:0055086 GO:0071704 GO:0071840 GO:0072521 GO:0140096 GO:1901135 GO:1901360 GO:1901564 GO:1901605 GO:1901657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ank_5

Protein Analysis

373

Amino Acids

41.53

Weight (kDa)

4.97

Isoelectric Point (pI)

36.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	53 - 140	8.2e-12	Ankyrin repeats (3 copies)
Ank_4	PF13637	53 - 102	3.2e-07	Ankyrin repeats (many copies)
Ank_5	PF13857	69 - 122	1.4e-06	Ankyrin repeats (many copies)
Ank	PF00023	82 - 112	8.1e-06	Ankyrin repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65860 AT5G65860 AT5G65860
fragaria_vesca	FvH4_2g33350
malus_domestica	MD08G1088100.v1.1
prunus_persica	Prupe.1G425800_v2.0.a1
pyrus_communis	pycom08g07170 pycom15g06810
rosa_chinensis	RchiOBHm_Chr6g0309231
rosa_laevigata	RLG00000010580
rosa_multiflora	Rmu_sc0016971.1_g000006 Rmu_sc0020102.1_g000011
rosa_roxburghii	Rroxscaffold_7G00159540
rosa_rugosa	Rorug06G0370500
rosa_samantha	Rh6BG492800 Rh6CG497700 Rh6DG484300
rosa_wichuraiana	Rw6G042120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	314
AccII	CGCG	1 cut(s)	37
AccIII	TCCGGA	1 cut(s)	212
AciI	CCGC	8 cut(s)	57, 147, 167, 254, 285, 288, 351, 542
AcoI	YGGCCR	3 cut(s)	277, 363, 766
AcsI	RAATTY	2 cut(s)	11, 22
AcuI	CTGAAG	2 cut(s)	902, 959
AcyI	GRCGYC	1 cut(s)	183
AfaI	GTAC	2 cut(s)	230, 432
AfiI	CCNNNNNNNGG	1 cut(s)	775
AflIII	ACRYGT	1 cut(s)	222
AgsI	TTSAA	2 cut(s)	419, 910
AjiI	CACGTC	1 cut(s)	223
AjnI	CCWGG	1 cut(s)	320
Alw21I	GWGCWC	2 cut(s)	399, 599
Ama87I	CYCGRG	1 cut(s)	887
Aor13HI	TCCGGA	1 cut(s)	212
AoxI	GGCC	5 cut(s)	244, 277, 297, 363, 766
ApeKI	GCWGC	2 cut(s)	266, 1069
ApoI	RAATTY	2 cut(s)	11, 22
AseI	ATTAAT	1 cut(s)	569
AspLEI	GCGC	1 cut(s)	580
AspS9I	GGNCC	1 cut(s)	298
AsuC2I	CCSGG	3 cut(s)	412, 888, 889
AsuHPI	GGTGA	3 cut(s)	556, 689, 851
AvaI	CYCGRG	1 cut(s)	887
BaeGI	GKGCMC	1 cut(s)	319
BalI	TGGCCA	2 cut(s)	279, 365
BanI	GGYRCC	1 cut(s)	314
BanII	GRGCYC	1 cut(s)	399
BauI	CACGAG	1 cut(s)	380
Bbv12I	GWGCWC	2 cut(s)	399, 599
BbvI	GCAGC	2 cut(s)	278, 1081
BccI	CCATC	4 cut(s)	517, 544, 628, 800
BceAI	ACGGC	2 cut(s)	193, 253
BciT130I	CCWGG	1 cut(s)	322
BcnI	CCSGG	3 cut(s)	412, 888, 889
BfaI	CTAG	2 cut(s)	447, 968
BisI	GCNGC	6 cut(s)	148, 168, 267, 285, 288, 1070
BlsI	GCNGC	6 cut(s)	149, 169, 268, 286, 289, 1071
Bme1390I	CCNGG	4 cut(s)	322, 412, 888, 889
BmeT110I	CYCGRG	1 cut(s)	887
BmgBI	CACGTC	1 cut(s)	223
BmgT120I	GGNCC	1 cut(s)	298
BmiI	GGNNCC	2 cut(s)	217, 316
BmrFI	CCNGG	4 cut(s)	322, 412, 888, 889
BmrI	ACTGGG	1 cut(s)	443
BmsI	GCATC	1 cut(s)	517
BmuI	ACTGGG	1 cut(s)	443
Bpu10I	CCTNAGC	1 cut(s)	1027
BpuEI	CTTGAG	1 cut(s)	82
BpuMI	CCSGG	3 cut(s)	412, 888, 889
BsaAI	YACGTR	1 cut(s)	825
BsaHI	GRCGYC	1 cut(s)	183
BsaJI	CCNNGG	4 cut(s)	320, 887, 888, 1104
BsaWI	WCCGGW	2 cut(s)	212, 871
BsaXI	ACNNNNNCTCC	4 cut(s)	207, 237, 1023, 1053
Bsc4I	CCNNNNNNNGG	1 cut(s)	775
Bse118I	RCCGGY	3 cut(s)	353, 374, 768
Bse1I	ACTGG	2 cut(s)	80, 438
BseAI	TCCGGA	1 cut(s)	212
BseBI	CCWGG	1 cut(s)	322
BseDI	CCNNGG	4 cut(s)	320, 887, 888, 1104
BseGI	GGATG	3 cut(s)	532, 639, 784
BseLI	CCNNNNNNNGG	1 cut(s)	775
BseMII	CTCAG	2 cut(s)	414, 839
BseNI	ACTGG	2 cut(s)	80, 438
BseRI	GAGGAG	2 cut(s)	389, 392
BseSI	GKGCMC	1 cut(s)	319
BseXI	GCAGC	2 cut(s)	278, 1081
BseYI	CCCAGC	1 cut(s)	270
Bsh1236I	CGCG	1 cut(s)	37
BshFI	GGCC	5 cut(s)	246, 279, 299, 365, 768
BshNI	GGYRCC	1 cut(s)	314
BsiHKAI	GWGCWC	2 cut(s)	399, 599
BsiHKCI	CYCGRG	1 cut(s)	887
BsiSI	CCGG	8 cut(s)	54, 213, 354, 375, 411, 769, 872, 888
BslI	CCNNNNNNNGG	1 cut(s)	775
BsmI	GAATGC	1 cut(s)	932
BsnI	GGCC	5 cut(s)	246, 279, 299, 365, 768
BsoBI	CYCGRG	1 cut(s)	887
Bsp1286I	GDGCHC	3 cut(s)	319, 399, 599
Bsp13I	TCCGGA	1 cut(s)	212
BspACI	CCGC	8 cut(s)	57, 147, 167, 254, 285, 288, 351, 542
BspANI	GGCC	5 cut(s)	246, 279, 299, 365, 768
BspCNI	CTCAG	2 cut(s)	415, 840
BspEI	TCCGGA	1 cut(s)	212
BspFNI	CGCG	1 cut(s)	37
BspLI	GGNNCC	2 cut(s)	217, 316
BspT107I	GGYRCC	1 cut(s)	314
BsrFI	RCCGGY	3 cut(s)	353, 374, 768
BsrI	ACTGG	2 cut(s)	80, 438
BssAI	RCCGGY	3 cut(s)	353, 374, 768
BssECI	CCNNGG	4 cut(s)	320, 887, 888, 1104
BssNI	GRCGYC	1 cut(s)	183
BssSI	CACGAG	1 cut(s)	380
BssT1I	CCWWGG	1 cut(s)	1104
Bst2BI	CACGAG	1 cut(s)	380
Bst2UI	CCWGG	1 cut(s)	322
Bst4CI	ACNGT	3 cut(s)	731, 953, 999
BstACI	GRCGYC	1 cut(s)	183
BstBAI	YACGTR	1 cut(s)	825
BstC8I	GCNNGC	4 cut(s)	152, 264, 355, 582
BstDEI	CTNAG	3 cut(s)	423, 848, 1027
BstF5I	GGATG	3 cut(s)	532, 639, 784
BstFNI	CGCG	1 cut(s)	37
BstHHI	GCGC	1 cut(s)	580
BstMWI	GCNNNNNNNGC	2 cut(s)	296, 371
BstNI	CCWGG	1 cut(s)	322
BstNSI	RCATGY	1 cut(s)	584
BstSCI	CCNGG	4 cut(s)	320, 410, 886, 887
BstSLI	GKGCMC	1 cut(s)	319
BstSNI	TACGTA	1 cut(s)	825
BstUI	CGCG	1 cut(s)	37
BstV1I	GCAGC	2 cut(s)	278, 1081
BsuRI	GGCC	5 cut(s)	246, 279, 299, 365, 768
BtrI	CACGTC	1 cut(s)	223
BtsCI	GGATG	3 cut(s)	532, 639, 784
BtsI	GCAGTG	2 cut(s)	297, 648
BtsIMutI	CAGTG	3 cut(s)	108, 297, 648
Cac8I	GCNNGC	4 cut(s)	152, 264, 355, 582
CfoI	GCGC	1 cut(s)	580
Cfr10I	RCCGGY	3 cut(s)	353, 374, 768
Cfr13I	GGNCC	1 cut(s)	298
Cfr9I	CCCGGG	1 cut(s)	887
CseI	GACGC	1 cut(s)	191
Csp6I	GTAC	2 cut(s)	229, 431
CviAII	CATG	4 cut(s)	367, 581, 788, 941
CviQI	GTAC	2 cut(s)	229, 431
DdeI	CTNAG	3 cut(s)	423, 848, 1027
EaeI	YGGCCR	3 cut(s)	277, 363, 766
EciI	GGCGGA	2 cut(s)	72, 340
Ecl136II	GAGCTC	1 cut(s)	397
Eco105I	TACGTA	1 cut(s)	825
Eco130I	CCWWGG	1 cut(s)	1104
Eco147I	AGGCCT	1 cut(s)	246
Eco24I	GRGCYC	1 cut(s)	399
Eco53kI	GAGCTC	1 cut(s)	397
Eco57I	CTGAAG	2 cut(s)	902, 959
Eco88I	CYCGRG	1 cut(s)	887
EcoICRI	GAGCTC	1 cut(s)	397
EcoO109I	RGGNCCY	1 cut(s)	298
EcoRII	CCWGG	1 cut(s)	320
EcoT14I	CCWWGG	1 cut(s)	1104
EcoT22I	ATGCAT	1 cut(s)	934
EcoT38I	GRGCYC	1 cut(s)	399
ErhI	CCWWGG	1 cut(s)	1104
FaeI	CATG	4 cut(s)	370, 584, 791, 944
FalI	AAGNNNNNCTT	2 cut(s)	1010, 1042
FatI	CATG	4 cut(s)	366, 580, 787, 940
Fnu4HI	GCNGC	6 cut(s)	148, 168, 267, 285, 288, 1070
FokI	GGATG	3 cut(s)	539, 646, 791
FriOI	GRGCYC	1 cut(s)	399
Fsp4HI	GCNGC	6 cut(s)	148, 168, 267, 285, 288, 1070
FspBI	CTAG	2 cut(s)	447, 968
GlaI	GCGC	1 cut(s)	579
GluI	GCNGC	6 cut(s)	148, 168, 267, 285, 288, 1070
GsaI	CCCAGC	1 cut(s)	274
HaeIII	GGCC	5 cut(s)	246, 279, 299, 365, 768
HapII	CCGG	8 cut(s)	54, 213, 354, 375, 411, 769, 872, 888
HgaI	GACGC	1 cut(s)	191
HhaI	GCGC	1 cut(s)	580
Hin1I	GRCGYC	1 cut(s)	183
Hin1II	CATG	4 cut(s)	370, 584, 791, 944
Hin6I	GCGC	1 cut(s)	578
HinP1I	GCGC	1 cut(s)	578
HinfI	GANTC	6 cut(s)	4, 209, 415, 562, 894, 1112
HpaII	CCGG	8 cut(s)	54, 213, 354, 375, 411, 769, 872, 888
HphI	GGTGA	3 cut(s)	556, 689, 851
Hpy166II	GTNNAC	3 cut(s)	106, 646, 949
Hpy188I	TCNGA	5 cut(s)	18, 660, 798, 978, 1117
Hpy188III	TCNNGA	3 cut(s)	213, 305, 380
Hpy8I	GTNNAC	3 cut(s)	106, 646, 949
Hpy99I	CGWCG	3 cut(s)	185, 224, 239
HpyAV	CCTTC	6 cut(s)	137, 236, 289, 311, 348, 736
HpyCH4III	ACNGT	3 cut(s)	731, 953, 999
HpyCH4IV	ACGT	2 cut(s)	222, 824
HpyCH4V	TGCA	3 cut(s)	262, 787, 932
HpyF10VI	GCNNNNNNNGC	2 cut(s)	296, 371
HpyF3I	CTNAG	3 cut(s)	423, 848, 1027
HpySE526I	ACGT	2 cut(s)	222, 824
Hsp92I	GRCGYC	1 cut(s)	183
Hsp92II	CATG	4 cut(s)	370, 584, 791, 944
HspAI	GCGC	1 cut(s)	578
Kpn2I	TCCGGA	1 cut(s)	212
KroI	GCCGGC	1 cut(s)	353
KroNI	GCCGGC	1 cut(s)	355
LmnI	GCTCC	2 cut(s)	215, 402
Lsp1109I	GCAGC	2 cut(s)	278, 1081
LweI	GCATC	1 cut(s)	517
MaeI	CTAG	2 cut(s)	447, 968
MaeII	ACGT	2 cut(s)	222, 824
MaeIII	GTNAC	3 cut(s)	377, 751, 953
MboII	GAAGA	4 cut(s)	152, 184, 898, 928
MhlI	GDGCHC	3 cut(s)	319, 399, 599
MlsI	TGGCCA	2 cut(s)	279, 365
MluCI	AATT	5 cut(s)	11, 22, 64, 70, 759
MluNI	TGGCCA	2 cut(s)	279, 365
MlyI	GAGTC	1 cut(s)	203
MmeI	TCCRAC	1 cut(s)	821
Mox20I	TGGCCA	2 cut(s)	279, 365
Mph1103I	ATGCAT	1 cut(s)	934
MreI	CGCCGGCG	1 cut(s)	353
MroI	TCCGGA	1 cut(s)	212
MroNI	GCCGGC	1 cut(s)	353
MscI	TGGCCA	2 cut(s)	279, 365
MseI	TTAA	2 cut(s)	569, 1017
MslI	CAYNNNNRTG	1 cut(s)	702
Msp20I	TGGCCA	2 cut(s)	279, 365
MspI	CCGG	8 cut(s)	54, 213, 354, 375, 411, 769, 872, 888
MspR9I	CCNGG	4 cut(s)	322, 412, 888, 889
Mva1269I	GAATGC	1 cut(s)	932
MvaI	CCWGG	1 cut(s)	322
MvnI	CGCG	1 cut(s)	37
MwoI	GCNNNNNNNGC	2 cut(s)	296, 371
NaeI	GCCGGC	1 cut(s)	355
NciI	CCSGG	3 cut(s)	412, 888, 889
NgoMIV	GCCGGC	1 cut(s)	353
NlaIII	CATG	4 cut(s)	370, 584, 791, 944
NlaIV	GGNNCC	2 cut(s)	217, 316
NmeAIII	GCCGAG	1 cut(s)	211
NmuCI	GTSAC	3 cut(s)	377, 751, 953
NsiI	ATGCAT	1 cut(s)	934
NspI	RCATGY	1 cut(s)	584
PaeI	GCATGC	1 cut(s)	584
PceI	AGGCCT	1 cut(s)	246
PcsI	WCGNNNNNNNCGW	2 cut(s)	183, 378
PctI	GAATGC	1 cut(s)	932
PdiI	GCCGGC	1 cut(s)	355
PfeI	GAWTC	5 cut(s)	4, 415, 562, 894, 1112
PkrI	GCNGC	6 cut(s)	149, 169, 268, 286, 289, 1071
PleI	GAGTC	1 cut(s)	203
PpsI	GAGTC	1 cut(s)	203
Ppu21I	YACGTR	1 cut(s)	825
PshBI	ATTAAT	1 cut(s)	569
Psp124BI	GAGCTC	1 cut(s)	399
Psp6I	CCWGG	1 cut(s)	320
PspFI	CCCAGC	1 cut(s)	270
PspGI	CCWGG	1 cut(s)	320
PspN4I	GGNNCC	2 cut(s)	217, 316
PspPI	GGNCC	1 cut(s)	298
RsaI	GTAC	2 cut(s)	230, 432
RsaNI	GTAC	2 cut(s)	229, 431
RseI	CAYNNNNRTG	1 cut(s)	702
SacI	GAGCTC	1 cut(s)	399
SaqAI	TTAA	2 cut(s)	569, 1017
SatI	GCNGC	6 cut(s)	148, 168, 267, 285, 288, 1070
Sau96I	GGNCC	1 cut(s)	298
SchI	GAGTC	1 cut(s)	203
ScrFI	CCNGG	4 cut(s)	322, 412, 888, 889
SduI	GDGCHC	3 cut(s)	319, 399, 599
SfaNI	GCATC	1 cut(s)	517
SgrAI	CRCCGGYG	1 cut(s)	353
SmaI	CCCGGG	1 cut(s)	889
SmiMI	CAYNNNNRTG	1 cut(s)	702
SmlI	CTYRAG	1 cut(s)	97
SmoI	CTYRAG	1 cut(s)	97
SnaBI	TACGTA	1 cut(s)	825
SphI	GCATGC	1 cut(s)	584
Sse9I	AATT	5 cut(s)	11, 22, 64, 70, 759
SseBI	AGGCCT	1 cut(s)	246
SsiI	CCGC	8 cut(s)	57, 147, 167, 254, 285, 288, 351, 542
SspI	AATATT	1 cut(s)	622
SspMI	CTAG	2 cut(s)	447, 968
SstI	GAGCTC	1 cut(s)	399
StuI	AGGCCT	1 cut(s)	246
StyD4I	CCNGG	4 cut(s)	320, 410, 886, 887
StyI	CCWWGG	1 cut(s)	1104
TaaI	ACNGT	3 cut(s)	731, 953, 999
TaiI	ACGT	2 cut(s)	225, 827
TaqI	TCGA	1 cut(s)	234
TasI	AATT	5 cut(s)	11, 22, 64, 70, 759
TauI	GCSGC	4 cut(s)	150, 170, 287, 290
TfiI	GAWTC	5 cut(s)	4, 415, 562, 894, 1112
Tru1I	TTAA	2 cut(s)	569, 1017
Tru9I	TTAA	2 cut(s)	569, 1017
TscAI	CASTG	3 cut(s)	115, 297, 655
TseFI	GTSAC	3 cut(s)	377, 751, 953
TseI	GCWGC	2 cut(s)	266, 1069
Tsp45I	GTSAC	3 cut(s)	377, 751, 953
TspDTI	ATGAA	4 cut(s)	17, 383, 804, 991
TspMI	CCCGGG	1 cut(s)	887
TspRI	CASTG	3 cut(s)	115, 297, 655
VspI	ATTAAT	1 cut(s)	569
XapI	RAATTY	2 cut(s)	11, 22
XceI	RCATGY	1 cut(s)	584
XmaI	CCCGGG	1 cut(s)	887
XspI	CTAG	2 cut(s)	447, 968
Zsp2I	ATGCAT	1 cut(s)	934

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.