Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0013197

Physical Location & Seq

Genomic Coordinates Reverse (-)

2722441 .. 2725301

Gene Structure 2861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00159540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGAAGATGATGAGAAGAAGCGAGAGCGACGGGGAGCGGAGTCGAATGGGAGAAGGCGGCAAGCAACTATGCGAGGCGGCGAAGAACGGCGACGCCGAGAAGCTCAAAACTCTAATAGACTCCGGAGCCGACGTGTCGTTCTTCGACGGCGAAGGCCTCACTCCGCTTATGCACGCAGCCCAGCTTGGGCACGCCGCCGCAGTGAAGGCCCTTCTGGAAGCTGGTGCCCCCTGGAACGCTCTCAACCCTTCCAATCTTTCTGCCGGCGATTTAGCCATGAACGCCGGTCAGGAGGAAGCCTACGAGCTCCTCCTCAATGCCGGGATTCAAGCTGAGTTGGTACTGGGAACGATTGCTAGGAGAGAAAATAACAATGGGGAGTGGAATGATGATTACTTGGAGGATAGAGTGAGCTTTAGTGAGGATAAGTTGATGGATGCCGAAAATAAGGCGGTGATGATGGCTTGGGAGAATCCATTAATGGAGGCACATGCGAAAGCTGTGTGCTCAAATGGGGGTCATATATTGAACATTGGATTTGGGATGGGTCTGGTGGACACTGCCATTCAGAAATACTCCCCTGCTTCGCATACTATCGTTGAGGCTCACCCTAATGTTTTCCAACGTATACTTGATGACGGTTGGGATAAGAAGGAAAATGTGACTATAATTTGTGGCCGGTGGCAGGATGTTGTGCATGAACTTCCGACTTTTGATGGGATTTTCTTTGATACGTATGGAGAGTATTATGATGACCTGAGAGAGTTTCACCAACAACTTCCGGTATTACTGAAGCCCGGGGGAATCTACTCTTTCTTCAATGGACTTTGTGGAGGTAATGCATTCTTCCATGTAGTTTACTGTCACATAGTTCAGCTAGAGCTTCAGAGTTTGGGTTACTCTACACAGTTCATTCCCTTGCCTGTTAAGGATTGTTTAGGAGAACAAGTTTGGGAGGGTGTCAAACAGAAGTATTGGCAGCTTGATACATATTACCTCCCTGTATGTCAGTCCTTGGAGGATTCAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006139 GO:0006464 GO:0006479 GO:0006520 GO:0006575 GO:0006725 GO:0006732 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009116 GO:0009119 GO:0009987 GO:0016273 GO:0016274 GO:0016740 GO:0016741 GO:0017144 GO:0018193 GO:0018195 GO:0018216 GO:0019538 GO:0019702 GO:0019752 GO:0022613 GO:0032259 GO:0034641 GO:0035246 GO:0036211 GO:0042254 GO:0042278 GO:0043170 GO:0043412 GO:0043414 GO:0043436 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044464 GO:0046128 GO:0046483 GO:0046498 GO:0046500 GO:0051186 GO:0055086 GO:0071704 GO:0071840 GO:0072521 GO:0140096 GO:1901135 GO:1901360 GO:1901564 GO:1901605 GO:1901657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ank_5

Protein Analysis

343

Amino Acids

38.11

Weight (kDa)

4.67

Isoelectric Point (pI)

40.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	23 - 110	3.1e-12	Ankyrin repeats (3 copies)
Ank_5	PF13857	43 - 92	5.4e-06	Ankyrin repeats (many copies)
Ank	PF00023	52 - 82	7.2e-06	Ankyrin repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65860 AT5G65860 AT5G65860
fragaria_vesca	FvH4_2g33350
malus_domestica	MD08G1088100.v1.1
prunus_persica	Prupe.1G425800_v2.0.a1
pyrus_communis	pycom08g07170 pycom15g06810
rosa_chinensis	RchiOBHm_Chr6g0309231
rosa_laevigata	RLG00000010580
rosa_multiflora	Rmu_sc0016971.1_g000006 Rmu_sc0020102.1_g000011
rosa_roxburghii	Rroxscaffold_7G00159540
rosa_rugosa	Rorug06G0370500
rosa_samantha	Rh6BG492800 Rh6CG497700 Rh6DG484300
rosa_wichuraiana	Rw6G042120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	224
AccBSI	CCGCTC	1 cut(s)	37
AccI	GTMKAC	1 cut(s)	628
AccIII	TCCGGA	1 cut(s)	122
AciI	CCGC	7 cut(s)	37, 57, 77, 164, 195, 198, 452
AcoI	YGGCCR	1 cut(s)	676
AcuI	CTGAAG	2 cut(s)	812, 869
AcyI	GRCGYC	1 cut(s)	93
AfaI	GTAC	1 cut(s)	342
AfiI	CCNNNNNNNGG	2 cut(s)	186, 685
AflIII	ACRYGT	1 cut(s)	132
AgsI	TTSAA	3 cut(s)	329, 529, 820
AjiI	CACGTC	1 cut(s)	133
AjnI	CCWGG	1 cut(s)	230
Alw21I	GWGCWC	2 cut(s)	309, 509
Ama87I	CYCGRG	1 cut(s)	797
Aor13HI	TCCGGA	1 cut(s)	122
AoxI	GGCC	3 cut(s)	154, 207, 676
ApeKI	GCWGC	2 cut(s)	176, 979
AseI	ATTAAT	1 cut(s)	479
AspS9I	GGNCC	1 cut(s)	208
AsuC2I	CCSGG	3 cut(s)	322, 798, 799
AsuHPI	GGTGA	3 cut(s)	466, 599, 761
AvaI	CYCGRG	1 cut(s)	797
BaeGI	GKGCMC	2 cut(s)	192, 229
BanI	GGYRCC	1 cut(s)	224
BanII	GRGCYC	1 cut(s)	309
Bbv12I	GWGCWC	2 cut(s)	309, 509
BbvI	GCAGC	2 cut(s)	188, 991
BccI	CCATC	4 cut(s)	427, 454, 538, 710
BceAI	ACGGC	2 cut(s)	103, 163
BciT130I	CCWGG	1 cut(s)	232
BcnI	CCSGG	3 cut(s)	322, 798, 799
BfaI	CTAG	2 cut(s)	357, 878
BisI	GCNGC	6 cut(s)	58, 78, 177, 195, 198, 980
BlsI	GCNGC	6 cut(s)	59, 79, 178, 196, 199, 981
Bme1390I	CCNGG	4 cut(s)	232, 322, 798, 799
BmeT110I	CYCGRG	1 cut(s)	797
BmgBI	CACGTC	1 cut(s)	133
BmgT120I	GGNCC	1 cut(s)	208
BmiI	GGNNCC	2 cut(s)	127, 226
BmrFI	CCNGG	4 cut(s)	232, 322, 798, 799
BmrI	ACTGGG	1 cut(s)	353
BmsI	GCATC	1 cut(s)	427
BmuI	ACTGGG	1 cut(s)	353
BpuMI	CCSGG	3 cut(s)	322, 798, 799
BsaAI	YACGTR	1 cut(s)	735
BsaHI	GRCGYC	1 cut(s)	93
BsaJI	CCNNGG	4 cut(s)	230, 797, 798, 1014
BsaWI	WCCGGW	2 cut(s)	122, 781
BsaXI	ACNNNNNCTCC	4 cut(s)	117, 147, 933, 963
Bsc4I	CCNNNNNNNGG	2 cut(s)	186, 685
Bse118I	RCCGGY	3 cut(s)	263, 284, 678
Bse1I	ACTGG	1 cut(s)	348
BseAI	TCCGGA	1 cut(s)	122
BseBI	CCWGG	1 cut(s)	232
BseDI	CCNNGG	4 cut(s)	230, 797, 798, 1014
BseGI	GGATG	3 cut(s)	442, 549, 694
BseLI	CCNNNNNNNGG	2 cut(s)	186, 685
BseMII	CTCAG	2 cut(s)	324, 749
BseNI	ACTGG	1 cut(s)	348
BseRI	GAGGAG	2 cut(s)	299, 302
BseSI	GKGCMC	2 cut(s)	192, 229
BseXI	GCAGC	2 cut(s)	188, 991
BseYI	CCCAGC	1 cut(s)	180
BshFI	GGCC	3 cut(s)	156, 209, 678
BshNI	GGYRCC	1 cut(s)	224
BsiHKAI	GWGCWC	2 cut(s)	309, 509
BsiHKCI	CYCGRG	1 cut(s)	797
BsiSI	CCGG	7 cut(s)	123, 264, 285, 321, 679, 782, 798
BslI	CCNNNNNNNGG	2 cut(s)	186, 685
BsmI	GAATGC	1 cut(s)	842
BsnI	GGCC	3 cut(s)	156, 209, 678
BsoBI	CYCGRG	1 cut(s)	797
Bsp1286I	GDGCHC	4 cut(s)	192, 229, 309, 509
Bsp13I	TCCGGA	1 cut(s)	122
BspACI	CCGC	7 cut(s)	37, 57, 77, 164, 195, 198, 452
BspANI	GGCC	3 cut(s)	156, 209, 678
BspCNI	CTCAG	2 cut(s)	325, 750
BspEI	TCCGGA	1 cut(s)	122
BspLI	GGNNCC	2 cut(s)	127, 226
BspT107I	GGYRCC	1 cut(s)	224
BsrBI	CCGCTC	1 cut(s)	37
BsrFI	RCCGGY	3 cut(s)	263, 284, 678
BsrI	ACTGG	1 cut(s)	348
BssAI	RCCGGY	3 cut(s)	263, 284, 678
BssECI	CCNNGG	4 cut(s)	230, 797, 798, 1014
BssNAI	GTATAC	1 cut(s)	629
BssNI	GRCGYC	1 cut(s)	93
BssT1I	CCWWGG	1 cut(s)	1014
Bst1107I	GTATAC	1 cut(s)	629
Bst2UI	CCWGG	1 cut(s)	232
Bst4CI	ACNGT	3 cut(s)	641, 863, 909
BstACI	GRCGYC	1 cut(s)	93
BstBAI	YACGTR	1 cut(s)	735
BstC8I	GCNNGC	4 cut(s)	62, 174, 192, 265
BstDEI	CTNAG	2 cut(s)	333, 758
BstF5I	GGATG	3 cut(s)	442, 549, 694
BstMWI	GCNNNNNNNGC	2 cut(s)	206, 281
BstNI	CCWGG	1 cut(s)	232
BstNSI	RCATGY	1 cut(s)	494
BstSCI	CCNGG	4 cut(s)	230, 320, 796, 797
BstSLI	GKGCMC	2 cut(s)	192, 229
BstSNI	TACGTA	1 cut(s)	735
BstV1I	GCAGC	2 cut(s)	188, 991
BstZ17I	GTATAC	1 cut(s)	629
BsuRI	GGCC	3 cut(s)	156, 209, 678
BtrI	CACGTC	1 cut(s)	133
BtsCI	GGATG	3 cut(s)	442, 549, 694
BtsI	GCAGTG	2 cut(s)	207, 558
BtsIMutI	CAGTG	2 cut(s)	207, 558
Cac8I	GCNNGC	4 cut(s)	62, 174, 192, 265
Cfr10I	RCCGGY	3 cut(s)	263, 284, 678
Cfr13I	GGNCC	1 cut(s)	208
Cfr9I	CCCGGG	1 cut(s)	797
CseI	GACGC	1 cut(s)	101
Csp6I	GTAC	1 cut(s)	341
CviAII	CATG	4 cut(s)	277, 491, 698, 851
CviQI	GTAC	1 cut(s)	341
DdeI	CTNAG	2 cut(s)	333, 758
EaeI	YGGCCR	1 cut(s)	676
Ecl136II	GAGCTC	1 cut(s)	307
Eco105I	TACGTA	1 cut(s)	735
Eco130I	CCWWGG	1 cut(s)	1014
Eco147I	AGGCCT	1 cut(s)	156
Eco24I	GRGCYC	1 cut(s)	309
Eco53kI	GAGCTC	1 cut(s)	307
Eco57I	CTGAAG	2 cut(s)	812, 869
Eco88I	CYCGRG	1 cut(s)	797
EcoICRI	GAGCTC	1 cut(s)	307
EcoO109I	RGGNCCY	1 cut(s)	208
EcoRII	CCWGG	1 cut(s)	230
EcoT14I	CCWWGG	1 cut(s)	1014
EcoT22I	ATGCAT	1 cut(s)	844
EcoT38I	GRGCYC	1 cut(s)	309
ErhI	CCWWGG	1 cut(s)	1014
FaeI	CATG	4 cut(s)	280, 494, 701, 854
FatI	CATG	4 cut(s)	276, 490, 697, 850
FblI	GTMKAC	1 cut(s)	628
Fnu4HI	GCNGC	6 cut(s)	58, 78, 177, 195, 198, 980
FokI	GGATG	3 cut(s)	449, 556, 701
FriOI	GRGCYC	1 cut(s)	309
Fsp4HI	GCNGC	6 cut(s)	58, 78, 177, 195, 198, 980
FspBI	CTAG	2 cut(s)	357, 878
GluI	GCNGC	6 cut(s)	58, 78, 177, 195, 198, 980
GsaI	CCCAGC	1 cut(s)	184
HaeIII	GGCC	3 cut(s)	156, 209, 678
HapII	CCGG	7 cut(s)	123, 264, 285, 321, 679, 782, 798
HgaI	GACGC	1 cut(s)	101
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	4 cut(s)	280, 494, 701, 854
HinfI	GANTC	6 cut(s)	40, 119, 325, 472, 804, 1022
HpaII	CCGG	7 cut(s)	123, 264, 285, 321, 679, 782, 798
HphI	GGTGA	3 cut(s)	466, 599, 761
Hpy166II	GTNNAC	3 cut(s)	556, 629, 859
Hpy188I	TCNGA	4 cut(s)	570, 708, 888, 1027
Hpy188III	TCNNGA	3 cut(s)	123, 215, 290
Hpy8I	GTNNAC	3 cut(s)	556, 629, 859
Hpy99I	CGWCG	4 cut(s)	32, 95, 134, 149
HpyAV	CCTTC	6 cut(s)	47, 146, 199, 221, 258, 646
HpyCH4III	ACNGT	3 cut(s)	641, 863, 909
HpyCH4IV	ACGT	3 cut(s)	132, 625, 734
HpyCH4V	TGCA	3 cut(s)	172, 697, 842
HpyF10VI	GCNNNNNNNGC	2 cut(s)	206, 281
HpyF3I	CTNAG	2 cut(s)	333, 758
HpySE526I	ACGT	3 cut(s)	132, 625, 734
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	4 cut(s)	280, 494, 701, 854
Kpn2I	TCCGGA	1 cut(s)	122
KroI	GCCGGC	1 cut(s)	263
KroNI	GCCGGC	1 cut(s)	265
LmnI	GCTCC	3 cut(s)	34, 125, 312
Lsp1109I	GCAGC	2 cut(s)	188, 991
LweI	GCATC	1 cut(s)	427
MaeI	CTAG	2 cut(s)	357, 878
MaeII	ACGT	3 cut(s)	132, 625, 734
MaeIII	GTNAC	3 cut(s)	661, 863, 896
MbiI	CCGCTC	1 cut(s)	37
MboII	GAAGA	6 cut(s)	16, 27, 94, 133, 808, 838
MhlI	GDGCHC	4 cut(s)	192, 229, 309, 509
MluCI	AATT	1 cut(s)	669
MlyI	GAGTC	2 cut(s)	49, 113
MmeI	TCCRAC	2 cut(s)	646, 731
Mph1103I	ATGCAT	1 cut(s)	844
MroI	TCCGGA	1 cut(s)	122
MroNI	GCCGGC	1 cut(s)	263
MseI	TTAA	2 cut(s)	479, 927
MslI	CAYNNNNRTG	1 cut(s)	612
MspI	CCGG	7 cut(s)	123, 264, 285, 321, 679, 782, 798
MspR9I	CCNGG	4 cut(s)	232, 322, 798, 799
Mva1269I	GAATGC	1 cut(s)	842
MvaI	CCWGG	1 cut(s)	232
MwoI	GCNNNNNNNGC	2 cut(s)	206, 281
NaeI	GCCGGC	1 cut(s)	265
NciI	CCSGG	3 cut(s)	322, 798, 799
NgoMIV	GCCGGC	1 cut(s)	263
NlaIII	CATG	4 cut(s)	280, 494, 701, 854
NlaIV	GGNNCC	2 cut(s)	127, 226
NmeAIII	GCCGAG	1 cut(s)	121
NmuCI	GTSAC	2 cut(s)	661, 863
NsiI	ATGCAT	1 cut(s)	844
NspI	RCATGY	1 cut(s)	494
PceI	AGGCCT	1 cut(s)	156
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PctI	GAATGC	1 cut(s)	842
PdiI	GCCGGC	1 cut(s)	265
PfeI	GAWTC	4 cut(s)	325, 472, 804, 1022
PkrI	GCNGC	6 cut(s)	59, 79, 178, 196, 199, 981
PleI	GAGTC	2 cut(s)	48, 113
PpsI	GAGTC	2 cut(s)	48, 113
Ppu21I	YACGTR	1 cut(s)	735
PshBI	ATTAAT	1 cut(s)	479
Psp124BI	GAGCTC	1 cut(s)	309
Psp6I	CCWGG	1 cut(s)	230
PspFI	CCCAGC	1 cut(s)	180
PspGI	CCWGG	1 cut(s)	230
PspN4I	GGNNCC	2 cut(s)	127, 226
PspPI	GGNCC	1 cut(s)	208
RsaI	GTAC	1 cut(s)	342
RsaNI	GTAC	1 cut(s)	341
RseI	CAYNNNNRTG	1 cut(s)	612
SacI	GAGCTC	1 cut(s)	309
SaqAI	TTAA	2 cut(s)	479, 927
SatI	GCNGC	6 cut(s)	58, 78, 177, 195, 198, 980
Sau96I	GGNCC	1 cut(s)	208
SchI	GAGTC	2 cut(s)	49, 113
ScrFI	CCNGG	4 cut(s)	232, 322, 798, 799
SduI	GDGCHC	4 cut(s)	192, 229, 309, 509
SfaNI	GCATC	1 cut(s)	427
SmaI	CCCGGG	1 cut(s)	799
SmiMI	CAYNNNNRTG	1 cut(s)	612
SnaBI	TACGTA	1 cut(s)	735
Sse9I	AATT	1 cut(s)	669
SseBI	AGGCCT	1 cut(s)	156
SsiI	CCGC	7 cut(s)	37, 57, 77, 164, 195, 198, 452
SspMI	CTAG	2 cut(s)	357, 878
SstI	GAGCTC	1 cut(s)	309
StuI	AGGCCT	1 cut(s)	156
StyD4I	CCNGG	4 cut(s)	230, 320, 796, 797
StyI	CCWWGG	1 cut(s)	1014
TaaI	ACNGT	3 cut(s)	641, 863, 909
TaiI	ACGT	3 cut(s)	135, 628, 737
TaqI	TCGA	2 cut(s)	43, 144
TasI	AATT	1 cut(s)	669
TauI	GCSGC	4 cut(s)	60, 80, 197, 200
TfiI	GAWTC	4 cut(s)	325, 472, 804, 1022
Tru1I	TTAA	2 cut(s)	479, 927
Tru9I	TTAA	2 cut(s)	479, 927
TscAI	CASTG	2 cut(s)	207, 565
TseFI	GTSAC	2 cut(s)	661, 863
TseI	GCWGC	2 cut(s)	176, 979
Tsp45I	GTSAC	2 cut(s)	661, 863
TspDTI	ATGAA	4 cut(s)	17, 293, 714, 901
TspMI	CCCGGG	1 cut(s)	797
TspRI	CASTG	2 cut(s)	207, 565
VspI	ATTAAT	1 cut(s)	479
XceI	RCATGY	1 cut(s)	494
XmaI	CCCGGG	1 cut(s)	797
XmiI	GTMKAC	1 cut(s)	628
XspI	CTAG	2 cut(s)	357, 878
Zsp2I	ATGCAT	1 cut(s)	844

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.