Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0013197

Physical Location & Seq

Genomic Coordinates Reverse (-)

7274138 .. 7275542

Gene Structure 1405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1088100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGAAGAAGGCGCGCAGCTATGTGAGGCGGCGAGGAACGGCGACACCGAGAAGCTGAAGGCTCTAATACTCGCCGGAGCTGACGTTACGTACTTCGACGGTGAAGGCCTCAATCCGCTGATGCACGCCGCCAAGCTGGGCCACGCCGACGCCGTCACAGCCCTTCTAGAAGCTGGCGCGCCCTGGAACGCCTTATCCCCCTCCAATCTCTCCGCCGGCGATTTCGCCATGGAAGCAGGCCACGAGGACGCCTACGACATCCTCCTCAATGCCGGGATTCAAGCTGAATTGGTACTCGGAACGATTGCGCGGAGGGAGAAGAAGGACGGGGATAGCGATGGTGATTATTTGGAAGACAGAGTGAGCTTTAGTGAGGATAAGCTTATGGACTCGAATTGTAAGGCGGTGATGATGGCGTGGGAGCATCCGTTAATGGAGGCGCACGCGAAAGCGGTTTGTTCCGGAGGTGGCCATATATTGAACATTGGATTTGGAATGGGGCTTGTGGATACAGCCATTCAGAAATACTCCCCTGCTTCGCACACCATCGTTGAGGCTCACCCGGAGGTTTATCAGCGTATGATTCGAACCGGTTGGGCTCAGAAGGATAATGTGAACATAATATTCGGCCGATGGCAGGATGTGCTACCTCAGCTTAAATCATATGATGGGATTTTCTTTGACACCTACGGAGAGTACTACGAAGACCTGAGAGAGTTCCACCAGCATCTTCCCGTGTTGTTGAAGCCCGGGGGAATCTACTCGTTCTTCAATGGCCTTTGCGGAGGTAATGCCTTCTTCCATGTTGTTTACTGTCATTTGGTCTCTCTAGAGCTTCAGAATTTGGGTTACTCTACACAGTTCATTCCATTGCCTGTCAAGGATTGTTTAGGAGACGAAGTTTGGGAAGGTGTCAAACAAAAGTATTGGCAGCTCGATACTTATTACCTCCCCGTTTGTCAGTCTGTAGATGATACGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006139 GO:0006464 GO:0006479 GO:0006520 GO:0006575 GO:0006725 GO:0006732 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009116 GO:0009119 GO:0009987 GO:0016273 GO:0016274 GO:0016740 GO:0016741 GO:0017144 GO:0018193 GO:0018195 GO:0018216 GO:0019538 GO:0019702 GO:0019752 GO:0022613 GO:0032259 GO:0034641 GO:0035246 GO:0036211 GO:0042254 GO:0042278 GO:0043170 GO:0043412 GO:0043414 GO:0043436 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044464 GO:0046128 GO:0046483 GO:0046498 GO:0046500 GO:0051186 GO:0055086 GO:0071704 GO:0071840 GO:0072521 GO:0140096 GO:1901135 GO:1901360 GO:1901564 GO:1901605 GO:1901657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ank_5

Protein Analysis

328

Amino Acids

36.18

Weight (kDa)

4.69

Isoelectric Point (pI)

33.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	7 - 94	6.4e-11	Ankyrin repeats (3 copies)
Ank_5	PF13857	23 - 76	1.4e-06	Ankyrin repeats (many copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65860 AT5G65860 AT5G65860
fragaria_vesca	FvH4_2g33350
malus_domestica	MD08G1088100.v1.1
prunus_persica	Prupe.1G425800_v2.0.a1
pyrus_communis	pycom08g07170 pycom15g06810
rosa_chinensis	RchiOBHm_Chr6g0309231
rosa_laevigata	RLG00000010580
rosa_multiflora	Rmu_sc0016971.1_g000006 Rmu_sc0020102.1_g000011
rosa_roxburghii	Rroxscaffold_7G00159540
rosa_rugosa	Rorug06G0370500
rosa_samantha	Rh6BG492800 Rh6CG497700 Rh6DG484300
rosa_wichuraiana	Rw6G042120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	14, 179, 310, 446
AccIII	TCCGGA	1 cut(s)	461
AciI	CCGC	8 cut(s)	29, 116, 129, 213, 310, 404, 452, 783
AcoI	YGGCCR	2 cut(s)	469, 628
AcsI	RAATTY	1 cut(s)	841
AcuI	CTGAAG	2 cut(s)	77, 821
AcyI	GRCGYC	2 cut(s)	150, 249
AfaI	GTAC	3 cut(s)	92, 294, 698
AfiI	CCNNNNNNNGG	1 cut(s)	637
AgeI	ACCGGT	1 cut(s)	590
AgsI	TTSAA	4 cut(s)	281, 481, 745, 772
AjnI	CCWGG	1 cut(s)	182
AloI	GAACNNNNNNTCC	2 cut(s)	179, 211
Alw26I	GTCTC	2 cut(s)	829, 888
Ama87I	CYCGRG	1 cut(s)	749
Aor13HI	TCCGGA	1 cut(s)	461
AoxI	GGCC	6 cut(s)	106, 139, 238, 469, 628, 775
ApeKI	GCWGC	2 cut(s)	16, 931
ApoI	RAATTY	1 cut(s)	841
AscI	GGCGCGCC	1 cut(s)	177
AsiGI	ACCGGT	1 cut(s)	590
AspLEI	GCGC	6 cut(s)	14, 16, 179, 181, 310, 442
AspS9I	GGNCC	1 cut(s)	139
AsuC2I	CCSGG	4 cut(s)	274, 563, 750, 751
AsuHPI	GGTGA	4 cut(s)	113, 353, 418, 551
AsuII	TTCGAA	1 cut(s)	586
AvaI	CYCGRG	1 cut(s)	749
BalI	TGGCCA	1 cut(s)	471
BanII	GRGCYC	1 cut(s)	601
BauI	CACGAG	1 cut(s)	242
BbsI	GAAGAC	2 cut(s)	360, 711
BbvCI	CCTCAGC	1 cut(s)	651
BbvI	GCAGC	2 cut(s)	28, 943
BccI	CCATC	5 cut(s)	332, 406, 554, 627, 662
BceAI	ACGGC	2 cut(s)	55, 137
BciT130I	CCWGG	1 cut(s)	184
BciVI	GTATCC	1 cut(s)	502
BcnI	CCSGG	4 cut(s)	274, 563, 750, 751
BcoDI	GTCTC	2 cut(s)	829, 888
BfaI	CTAG	2 cut(s)	167, 830
BfmI	CTRYAG	1 cut(s)	966
BfuI	GTATCC	1 cut(s)	502
BisI	GCNGC	4 cut(s)	17, 30, 129, 932
BlsI	GCNGC	4 cut(s)	18, 31, 130, 933
BmcAI	AGTACT	1 cut(s)	698
Bme1390I	CCNGG	5 cut(s)	184, 274, 563, 750, 751
BmeT110I	CYCGRG	1 cut(s)	749
BmgT120I	GGNCC	1 cut(s)	139
BmrFI	CCNGG	5 cut(s)	184, 274, 563, 750, 751
BmsI	GCATC	3 cut(s)	111, 433, 736
BpiI	GAAGAC	2 cut(s)	360, 711
Bpu10I	CCTNAGC	1 cut(s)	651
Bpu14I	TTCGAA	1 cut(s)	586
BpuMI	CCSGG	4 cut(s)	274, 563, 750, 751
BsaAI	YACGTR	1 cut(s)	90
BsaHI	GRCGYC	2 cut(s)	150, 249
BsaI	GGTCTC	1 cut(s)	829
BsaJI	CCNNGG	4 cut(s)	182, 228, 749, 750
BsaWI	WCCGGW	2 cut(s)	461, 590
BsaXI	ACNNNNNCTCC	6 cut(s)	69, 99, 413, 443, 885, 915
Bsc4I	CCNNNNNNNGG	1 cut(s)	637
Bse118I	RCCGGY	2 cut(s)	215, 590
Bse3DI	GCAATG	1 cut(s)	869
BseAI	TCCGGA	1 cut(s)	461
BseBI	CCWGG	1 cut(s)	184
BseDI	CCNNGG	4 cut(s)	182, 228, 749, 750
BseGI	GGATG	3 cut(s)	258, 424, 646
BseLI	CCNNNNNNNGG	1 cut(s)	637
BseMI	GCAATG	1 cut(s)	869
BseMII	CTCAG	3 cut(s)	614, 665, 701
BsePI	GCGCGC	2 cut(s)	12, 177
BseRI	GAGGAG	1 cut(s)	254
BseX3I	CGGCCG	1 cut(s)	628
BseXI	GCAGC	2 cut(s)	28, 943
BseYI	CCCAGC	1 cut(s)	136
Bsh1236I	CGCG	4 cut(s)	14, 179, 310, 446
Bsh1285I	CGRYCG	1 cut(s)	631
BshFI	GGCC	6 cut(s)	108, 141, 240, 471, 630, 777
BshTI	ACCGGT	1 cut(s)	590
BsiEI	CGRYCG	1 cut(s)	631
BsiHKCI	CYCGRG	1 cut(s)	749
BsiSI	CCGG	7 cut(s)	75, 216, 273, 462, 563, 591, 750
BslI	CCNNNNNNNGG	1 cut(s)	637
BsmAI	GTCTC	2 cut(s)	829, 888
BsmBI	CGTCTC	1 cut(s)	888
BsnI	GGCC	6 cut(s)	108, 141, 240, 471, 630, 777
Bso31I	GGTCTC	1 cut(s)	829
BsoBI	CYCGRG	1 cut(s)	749
Bsp119I	TTCGAA	1 cut(s)	586
Bsp1286I	GDGCHC	1 cut(s)	601
Bsp13I	TCCGGA	1 cut(s)	461
Bsp19I	CCATGG	1 cut(s)	228
BspACI	CCGC	8 cut(s)	29, 116, 129, 213, 310, 404, 452, 783
BspANI	GGCC	6 cut(s)	108, 141, 240, 471, 630, 777
BspCNI	CTCAG	3 cut(s)	613, 664, 702
BspEI	TCCGGA	1 cut(s)	461
BspFNI	CGCG	4 cut(s)	14, 179, 310, 446
BspT104I	TTCGAA	1 cut(s)	586
BspTNI	GGTCTC	1 cut(s)	829
BsrDI	GCAATG	1 cut(s)	869
BsrFI	RCCGGY	2 cut(s)	215, 590
BssAI	RCCGGY	2 cut(s)	215, 590
BssECI	CCNNGG	4 cut(s)	182, 228, 749, 750
BssHII	GCGCGC	2 cut(s)	12, 177
BssNI	GRCGYC	2 cut(s)	150, 249
BssSI	CACGAG	1 cut(s)	242
BssT1I	CCWWGG	1 cut(s)	228
Bst2BI	CACGAG	1 cut(s)	242
Bst2UI	CCWGG	1 cut(s)	184
Bst4CI	ACNGT	3 cut(s)	101, 815, 861
BstACI	GRCGYC	2 cut(s)	150, 249
BstAPI	GCANNNNNTGC	1 cut(s)	643
BstBAI	YACGTR	1 cut(s)	90
BstBI	TTCGAA	1 cut(s)	586
BstC8I	GCNNGC	7 cut(s)	14, 126, 175, 179, 217, 238, 444
BstDEI	CTNAG	3 cut(s)	600, 651, 710
BstDSI	CCRYGG	1 cut(s)	228
BstF5I	GGATG	3 cut(s)	258, 424, 646
BstFNI	CGCG	4 cut(s)	14, 179, 310, 446
BstHHI	GCGC	6 cut(s)	14, 16, 179, 181, 310, 442
BstMAI	GTCTC	2 cut(s)	829, 888
BstMCI	CGRYCG	1 cut(s)	631
BstMWI	GCNNNNNNNGC	4 cut(s)	158, 233, 643, 652
BstNI	CCWGG	1 cut(s)	184
BstSCI	CCNGG	5 cut(s)	182, 272, 561, 748, 749
BstSFI	CTRYAG	1 cut(s)	966
BstSNI	TACGTA	1 cut(s)	90
BstUI	CGCG	4 cut(s)	14, 179, 310, 446
BstV1I	GCAGC	2 cut(s)	28, 943
BstV2I	GAAGAC	2 cut(s)	360, 711
BstZI	CGGCCG	1 cut(s)	628
BsuI	GTATCC	1 cut(s)	502
BsuRI	GGCC	6 cut(s)	108, 141, 240, 471, 630, 777
BtgI	CCRYGG	1 cut(s)	228
BtgZI	GCGATG	1 cut(s)	351
BtsCI	GGATG	3 cut(s)	258, 424, 646
Cac8I	GCNNGC	7 cut(s)	14, 126, 175, 179, 217, 238, 444
CfoI	GCGC	6 cut(s)	14, 16, 179, 181, 310, 442
Cfr10I	RCCGGY	2 cut(s)	215, 590
Cfr13I	GGNCC	1 cut(s)	139
Cfr9I	CCCGGG	1 cut(s)	749
CseI	GACGC	2 cut(s)	158, 257
Csp6I	GTAC	3 cut(s)	91, 293, 697
CspAI	ACCGGT	1 cut(s)	590
CviAII	CATG	2 cut(s)	229, 803
CviQI	GTAC	3 cut(s)	91, 293, 697
DdeI	CTNAG	3 cut(s)	600, 651, 710
EaeI	YGGCCR	2 cut(s)	469, 628
EagI	CGGCCG	1 cut(s)	628
EciI	GGCGGA	1 cut(s)	202
EclXI	CGGCCG	1 cut(s)	628
Eco105I	TACGTA	1 cut(s)	90
Eco130I	CCWWGG	1 cut(s)	228
Eco147I	AGGCCT	1 cut(s)	108
Eco24I	GRGCYC	1 cut(s)	601
Eco31I	GGTCTC	1 cut(s)	829
Eco52I	CGGCCG	1 cut(s)	628
Eco57I	CTGAAG	2 cut(s)	77, 821
Eco88I	CYCGRG	1 cut(s)	749
EcoRII	CCWGG	1 cut(s)	182
EcoT14I	CCWWGG	1 cut(s)	228
EcoT38I	GRGCYC	1 cut(s)	601
ErhI	CCWWGG	1 cut(s)	228
Esp3I	CGTCTC	1 cut(s)	888
FaeI	CATG	2 cut(s)	232, 806
FatI	CATG	2 cut(s)	228, 802
FauNDI	CATATG	1 cut(s)	664
Fnu4HI	GCNGC	4 cut(s)	17, 30, 129, 932
FokI	GGATG	3 cut(s)	245, 411, 653
FriOI	GRGCYC	1 cut(s)	601
Fsp4HI	GCNGC	4 cut(s)	17, 30, 129, 932
FspBI	CTAG	2 cut(s)	167, 830
GlaI	GCGC	6 cut(s)	13, 15, 178, 180, 309, 441
GluI	GCNGC	4 cut(s)	17, 30, 129, 932
GsaI	CCCAGC	1 cut(s)	140
HaeIII	GGCC	6 cut(s)	108, 141, 240, 471, 630, 777
HapII	CCGG	7 cut(s)	75, 216, 273, 462, 563, 591, 750
HgaI	GACGC	2 cut(s)	158, 257
HhaI	GCGC	6 cut(s)	14, 16, 179, 181, 310, 442
Hin1I	GRCGYC	2 cut(s)	150, 249
Hin1II	CATG	2 cut(s)	232, 806
Hin6I	GCGC	6 cut(s)	12, 14, 177, 179, 308, 440
HinP1I	GCGC	6 cut(s)	12, 14, 177, 179, 308, 440
HindIII	AAGCTT	1 cut(s)	380
HinfI	GANTC	4 cut(s)	277, 389, 583, 756
HpaII	CCGG	7 cut(s)	75, 216, 273, 462, 563, 591, 750
HphI	GGTGA	4 cut(s)	113, 353, 418, 551
Hpy166II	GTNNAC	2 cut(s)	616, 811
Hpy188I	TCNGA	4 cut(s)	299, 522, 603, 840
Hpy188III	TCNNGA	3 cut(s)	167, 462, 830
Hpy8I	GTNNAC	2 cut(s)	616, 811
Hpy99I	CGWCG	2 cut(s)	101, 152
HpyAV	CCTTC	7 cut(s)	52, 98, 173, 316, 598, 805, 902
HpyCH4III	ACNGT	3 cut(s)	101, 815, 861
HpyCH4IV	ACGT	2 cut(s)	84, 89
HpyCH4V	TGCA	1 cut(s)	124
HpyF10VI	GCNNNNNNNGC	4 cut(s)	158, 233, 643, 652
HpyF3I	CTNAG	3 cut(s)	600, 651, 710
HpySE526I	ACGT	2 cut(s)	84, 89
Hsp92I	GRCGYC	2 cut(s)	150, 249
Hsp92II	CATG	2 cut(s)	232, 806
HspAI	GCGC	6 cut(s)	12, 14, 177, 179, 308, 440
Kpn2I	TCCGGA	1 cut(s)	461
KroI	GCCGGC	1 cut(s)	215
KroNI	GCCGGC	1 cut(s)	217
LmnI	GCTCC	2 cut(s)	77, 421
Lsp1109I	GCAGC	2 cut(s)	28, 943
LweI	GCATC	3 cut(s)	111, 433, 736
MaeI	CTAG	2 cut(s)	167, 830
MaeII	ACGT	2 cut(s)	84, 89
MaeIII	GTNAC	3 cut(s)	85, 154, 848
MboII	GAAGA	7 cut(s)	17, 331, 365, 716, 722, 760, 790
MhlI	GDGCHC	1 cut(s)	601
MlsI	TGGCCA	1 cut(s)	471
MluCI	AATT	3 cut(s)	287, 394, 841
MluNI	TGGCCA	1 cut(s)	471
MlyI	GAGTC	1 cut(s)	383
Mox20I	TGGCCA	1 cut(s)	471
MreI	CGCCGGCG	1 cut(s)	215
MroI	TCCGGA	1 cut(s)	461
MroNI	GCCGGC	1 cut(s)	215
MscI	TGGCCA	1 cut(s)	471
MseI	TTAA	2 cut(s)	431, 657
Msp20I	TGGCCA	1 cut(s)	471
MspA1I	CMGCKG	1 cut(s)	118
MspI	CCGG	7 cut(s)	75, 216, 273, 462, 563, 591, 750
MspR9I	CCNGG	5 cut(s)	184, 274, 563, 750, 751
MvaI	CCWGG	1 cut(s)	184
MvnI	CGCG	4 cut(s)	14, 179, 310, 446
MwoI	GCNNNNNNNGC	4 cut(s)	158, 233, 643, 652
NaeI	GCCGGC	1 cut(s)	217
NciI	CCSGG	4 cut(s)	274, 563, 750, 751
NcoI	CCATGG	1 cut(s)	228
NdeI	CATATG	1 cut(s)	664
NgoMIV	GCCGGC	1 cut(s)	215
NlaIII	CATG	2 cut(s)	232, 806
NmuCI	GTSAC	1 cut(s)	154
NspV	TTCGAA	1 cut(s)	586
PalAI	GGCGCGCC	1 cut(s)	177
PauI	GCGCGC	2 cut(s)	12, 177
PceI	AGGCCT	1 cut(s)	108
PcsI	WCGNNNNNNNCGW	3 cut(s)	45, 150, 333
PdiI	GCCGGC	1 cut(s)	217
PfeI	GAWTC	3 cut(s)	277, 583, 756
PflFI	GACNNNGTC	1 cut(s)	152
PinAI	ACCGGT	1 cut(s)	590
PkrI	GCNGC	4 cut(s)	18, 31, 130, 933
PleI	GAGTC	1 cut(s)	383
PpsI	GAGTC	1 cut(s)	383
Ppu21I	YACGTR	1 cut(s)	90
Psp6I	CCWGG	1 cut(s)	182
PspFI	CCCAGC	1 cut(s)	136
PspGI	CCWGG	1 cut(s)	182
PspPI	GGNCC	1 cut(s)	139
PsyI	GACNNNGTC	1 cut(s)	152
PteI	GCGCGC	2 cut(s)	12, 177
RsaI	GTAC	3 cut(s)	92, 294, 698
RsaNI	GTAC	3 cut(s)	91, 293, 697
SaqAI	TTAA	2 cut(s)	431, 657
SatI	GCNGC	4 cut(s)	17, 30, 129, 932
Sau96I	GGNCC	1 cut(s)	139
ScaI	AGTACT	1 cut(s)	698
SchI	GAGTC	1 cut(s)	383
ScrFI	CCNGG	5 cut(s)	184, 274, 563, 750, 751
SduI	GDGCHC	1 cut(s)	601
SfaNI	GCATC	3 cut(s)	111, 433, 736
SfcI	CTRYAG	1 cut(s)	966
SfuI	TTCGAA	1 cut(s)	586
SgrAI	CRCCGGYG	1 cut(s)	215
SgsI	GGCGCGCC	1 cut(s)	177
SmaI	CCCGGG	1 cut(s)	751
SnaBI	TACGTA	1 cut(s)	90
Sse9I	AATT	3 cut(s)	287, 394, 841
SseBI	AGGCCT	1 cut(s)	108
SsiI	CCGC	8 cut(s)	29, 116, 129, 213, 310, 404, 452, 783
SspI	AATATT	1 cut(s)	624
SspMI	CTAG	2 cut(s)	167, 830
StuI	AGGCCT	1 cut(s)	108
StyD4I	CCNGG	5 cut(s)	182, 272, 561, 748, 749
StyI	CCWWGG	1 cut(s)	228
TaaI	ACNGT	3 cut(s)	101, 815, 861
TaiI	ACGT	2 cut(s)	87, 92
TaqI	TCGA	4 cut(s)	96, 392, 586, 936
TasI	AATT	3 cut(s)	287, 394, 841
TatI	WGTACW	1 cut(s)	696
TauI	GCSGC	2 cut(s)	32, 131
TfiI	GAWTC	3 cut(s)	277, 583, 756
Tru1I	TTAA	2 cut(s)	431, 657
Tru9I	TTAA	2 cut(s)	431, 657
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	2 cut(s)	16, 931
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	1 cut(s)	853
TspGWI	ACGGA	2 cut(s)	417, 705
TspMI	CCCGGG	1 cut(s)	749
Tth111I	GACNNNGTC	1 cut(s)	152
XapI	RAATTY	1 cut(s)	841
XbaI	TCTAGA	2 cut(s)	166, 829
XmaI	CCCGGG	1 cut(s)	749
XspI	CTAG	2 cut(s)	167, 830
ZrmI	AGTACT	1 cut(s)	698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.