Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008653

Physical Location & Seq

Genomic Coordinates Reverse (-)

26887611 .. 26889367

Gene Structure 1757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G67390.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGAGAAGCTTCTTAATCCGTACGATAAGCAGTGCATGAAAATGGCTATGCTTAAACATGAAGAAACTTTCAAGCAACAGGTATATGAACTTCATAGATTATATCAAGTTCAGAAGATATTGATGAAGAACATGGAGATCAACAAATTTACTACCAAGAACAATCATGTAAATTCAGGTCTAGGAACATTCATCAGAAGAGTTGACAACGAGATTGACCGGCCGGCGAATTTCTCCGGTGGTAATAATAATATAGAGATTATGGATGAGAGTGAGATCGAGTTAACCCTTGGTCCCTCGTGTTACGGTGGTGATGAAATGATGAGGATGAACAAGAAGAAGAAAAAGAACTCTTTGCCGGAGATGATGGACGGGAGTTTAAATTCCGGTCGCCGGAGTTTTTCTTCGTCTTCGACAGGATCAAGTAATAACAATAACAACAATCTTGAAGAACAAGTGAGGCAAGAAAGAATGATGAAACATCAGAAGCAGCAGCCATGGCTTCAAGCATTGACCTTGAATGTTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

176

Amino Acids

20.47

Weight (kDa)

9.04

Isoelectric Point (pI)

63.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008653)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67390 AT5G67390 AT5G67390
fragaria_vesca	FvH4_1g17290
malus_domestica	MD02G1182600.v1.1 MD15G1293900.v1.1
prunus_persica	Prupe.6G223500_v2.0.a1 Prupe.6G223500_v2.0.a1
pyrus_communis	pycom02g14810 pycom15g25700
rosa_chinensis	RchiOBHm_Chr2g0107481
rosa_laevigata	RLG00000017582
rosa_multiflora	Rmu_sc0005152.1_g000006
rosa_roxburghii	Rroxscaffold_2G00136290
rosa_rugosa	Rorug02G0144200 Rorug02G0144300 Rorug02G0144300 Rorug02G0144400
rosa_samantha	Rh2AG194100 Rh2BG206300 Rh2CG199300 Rh2DG201300
rosa_wichuraiana	Rw2G015380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	427
AcoI	YGGCCR	1 cut(s)	221
AcsI	RAATTY	4 cut(s)	146, 172, 229, 382
AfaI	GTAC	1 cut(s)	23
AfiI	CCNNNNNNNGG	1 cut(s)	393
AgsI	TTSAA	4 cut(s)	73, 449, 506, 520
AluBI	AGCT	1 cut(s)	10
AluI	AGCT	1 cut(s)	10
AlwI	GGATC	1 cut(s)	427
AoxI	GGCC	1 cut(s)	221
ApeKI	GCWGC	2 cut(s)	490, 493
ApoI	RAATTY	4 cut(s)	146, 172, 229, 382
AspS9I	GGNCC	1 cut(s)	293
AsuHPI	GGTGA	1 cut(s)	323
AvaII	GGWCC	1 cut(s)	293
BarI	GAAGNNNNNNTAC	2 cut(s)	75, 107
BauI	CACGAG	1 cut(s)	298
BbsI	GAAGAC	1 cut(s)	402
BbvI	GCAGC	2 cut(s)	502, 505
BccI	CCATC	1 cut(s)	361
BfaI	CTAG	1 cut(s)	182
BisI	GCNGC	2 cut(s)	491, 494
BlsI	GCNGC	2 cut(s)	492, 495
Bme18I	GGWCC	1 cut(s)	293
BmgT120I	GGNCC	1 cut(s)	293
BmiI	GGNNCC	1 cut(s)	295
BpiI	GAAGAC	1 cut(s)	402
BsaJI	CCNNGG	2 cut(s)	289, 497
BsaWI	WCCGGW	2 cut(s)	236, 386
Bsc4I	CCNNNNNNNGG	1 cut(s)	393
Bse118I	RCCGGY	2 cut(s)	219, 223
BseDI	CCNNGG	2 cut(s)	289, 497
BseGI	GGATG	2 cut(s)	271, 333
BseLI	CCNNNNNNNGG	1 cut(s)	393
BseX3I	CGGCCG	1 cut(s)	221
BseXI	GCAGC	2 cut(s)	502, 505
Bsh1285I	CGRYCG	2 cut(s)	224, 391
BshFI	GGCC	1 cut(s)	223
BsiEI	CGRYCG	2 cut(s)	224, 391
BsiSI	CCGG	6 cut(s)	220, 224, 237, 359, 387, 394
BsiWI	CGTACG	1 cut(s)	21
BslFI	GGGAC	1 cut(s)	279
BslI	CCNNNNNNNGG	1 cut(s)	393
BsmFI	GGGAC	1 cut(s)	279
BsnI	GGCC	1 cut(s)	223
Bsp143I	GATC	3 cut(s)	138, 276, 419
Bsp19I	CCATGG	1 cut(s)	497
BspANI	GGCC	1 cut(s)	223
BspLI	GGNNCC	1 cut(s)	295
BspPI	GGATC	1 cut(s)	427
BsrFI	RCCGGY	2 cut(s)	219, 223
BssAI	RCCGGY	2 cut(s)	219, 223
BssECI	CCNNGG	2 cut(s)	289, 497
BssMI	GATC	3 cut(s)	138, 276, 419
BssSI	CACGAG	1 cut(s)	298
BssT1I	CCWWGG	2 cut(s)	289, 497
Bst2BI	CACGAG	1 cut(s)	298
Bst4CI	ACNGT	1 cut(s)	308
Bst6I	CTCTTC	1 cut(s)	193
BstC8I	GCNNGC	1 cut(s)	225
BstDSI	CCRYGG	1 cut(s)	497
BstF5I	GGATG	2 cut(s)	271, 333
BstKTI	GATC	3 cut(s)	141, 279, 422
BstMBI	GATC	3 cut(s)	138, 276, 419
BstMCI	CGRYCG	2 cut(s)	224, 391
BstMWI	GCNNNNNNNGC	1 cut(s)	499
BstV1I	GCAGC	2 cut(s)	502, 505
BstV2I	GAAGAC	1 cut(s)	402
BstZI	CGGCCG	1 cut(s)	221
BsuRI	GGCC	1 cut(s)	223
BtgI	CCRYGG	1 cut(s)	497
BtsCI	GGATG	2 cut(s)	271, 333
BtsI	GCAGTG	1 cut(s)	38
BtsIMutI	CAGTG	1 cut(s)	38
Cac8I	GCNNGC	1 cut(s)	225
Cfr10I	RCCGGY	2 cut(s)	219, 223
Cfr13I	GGNCC	1 cut(s)	293
Csp6I	GTAC	1 cut(s)	22
CviAII	CATG	5 cut(s)	37, 59, 133, 167, 498
CviJI	RGCY	5 cut(s)	10, 47, 223, 496, 502
CviKI_1	RGCY	5 cut(s)	10, 47, 223, 496, 502
CviQI	GTAC	1 cut(s)	22
DpnI	GATC	3 cut(s)	140, 278, 421
DpnII	GATC	3 cut(s)	138, 276, 419
DraI	TTTAAA	1 cut(s)	381
EaeI	YGGCCR	1 cut(s)	221
EagI	CGGCCG	1 cut(s)	221
Eam1104I	CTCTTC	1 cut(s)	193
EarI	CTCTTC	1 cut(s)	193
EclXI	CGGCCG	1 cut(s)	221
Eco130I	CCWWGG	2 cut(s)	289, 497
Eco47I	GGWCC	1 cut(s)	293
Eco52I	CGGCCG	1 cut(s)	221
EcoT14I	CCWWGG	2 cut(s)	289, 497
ErhI	CCWWGG	2 cut(s)	289, 497
FaeI	CATG	5 cut(s)	40, 62, 136, 170, 501
FaqI	GGGAC	1 cut(s)	279
FatI	CATG	5 cut(s)	36, 58, 132, 166, 497
Fnu4HI	GCNGC	2 cut(s)	491, 494
FokI	GGATG	2 cut(s)	278, 340
Fsp4HI	GCNGC	2 cut(s)	491, 494
FspBI	CTAG	1 cut(s)	182
GluI	GCNGC	2 cut(s)	491, 494
HaeIII	GGCC	1 cut(s)	223
HapII	CCGG	6 cut(s)	220, 224, 237, 359, 387, 394
Hin1II	CATG	5 cut(s)	40, 62, 136, 170, 501
HincII	GTYRAC	2 cut(s)	205, 285
HindII	GTYRAC	2 cut(s)	205, 285
HindIII	AAGCTT	1 cut(s)	8
HpaI	GTTAAC	1 cut(s)	285
HpaII	CCGG	6 cut(s)	220, 224, 237, 359, 387, 394
HphI	GGTGA	1 cut(s)	323
Hpy166II	GTNNAC	2 cut(s)	205, 285
Hpy188I	TCNGA	3 cut(s)	114, 197, 486
Hpy188III	TCNNGA	1 cut(s)	446
Hpy8I	GTNNAC	2 cut(s)	205, 285
HpyCH4III	ACNGT	1 cut(s)	308
HpyCH4V	TGCA	1 cut(s)	36
HpyF10VI	GCNNNNNNNGC	1 cut(s)	499
Hsp92II	CATG	5 cut(s)	40, 62, 136, 170, 501
KroI	GCCGGC	1 cut(s)	223
KroNI	GCCGGC	1 cut(s)	225
KspAI	GTTAAC	1 cut(s)	285
Kzo9I	GATC	3 cut(s)	138, 276, 419
LpnPI	CCDG	9 cut(s)	65, 162, 233, 237, 250, 372, 400, 402, 407
Lsp1109I	GCAGC	2 cut(s)	502, 505
MaeI	CTAG	1 cut(s)	182
MaeIII	GTNAC	1 cut(s)	302
MalI	GATC	3 cut(s)	140, 278, 421
MboI	GATC	3 cut(s)	138, 276, 419
MboII	GAAGA	9 cut(s)	74, 127, 139, 210, 349, 352, 396, 402, 461
MluCI	AATT	4 cut(s)	146, 172, 229, 382
MnlI	CCTC	3 cut(s)	307, 318, 453
MroNI	GCCGGC	1 cut(s)	223
MseI	TTAA	4 cut(s)	15, 54, 284, 380
MslI	CAYNNNNRTG	1 cut(s)	41
MspI	CCGG	6 cut(s)	220, 224, 237, 359, 387, 394
MwoI	GCNNNNNNNGC	1 cut(s)	499
NaeI	GCCGGC	1 cut(s)	225
NcoI	CCATGG	1 cut(s)	497
NdeII	GATC	3 cut(s)	138, 276, 419
NgoMIV	GCCGGC	1 cut(s)	223
NlaIII	CATG	5 cut(s)	40, 62, 136, 170, 501
NlaIV	GGNNCC	1 cut(s)	295
PdiI	GCCGGC	1 cut(s)	225
Pfl23II	CGTACG	1 cut(s)	21
PkrI	GCNGC	2 cut(s)	492, 495
PspLI	CGTACG	1 cut(s)	21
PspN4I	GGNNCC	1 cut(s)	295
PspPI	GGNCC	1 cut(s)	293
RsaI	GTAC	1 cut(s)	23
RsaNI	GTAC	1 cut(s)	22
RseI	CAYNNNNRTG	1 cut(s)	41
SaqAI	TTAA	4 cut(s)	15, 54, 284, 380
SatI	GCNGC	2 cut(s)	491, 494
Sau3AI	GATC	3 cut(s)	138, 276, 419
Sau96I	GGNCC	1 cut(s)	293
SetI	ASST	4 cut(s)	12, 84, 181, 518
SinI	GGWCC	1 cut(s)	293
SmiMI	CAYNNNNRTG	1 cut(s)	41
Sse9I	AATT	4 cut(s)	146, 172, 229, 382
SspMI	CTAG	1 cut(s)	182
StyI	CCWWGG	2 cut(s)	289, 497
TaaI	ACNGT	1 cut(s)	308
TaqI	TCGA	2 cut(s)	279, 413
TasI	AATT	4 cut(s)	146, 172, 229, 382
Tru1I	TTAA	4 cut(s)	15, 54, 284, 380
Tru9I	TTAA	4 cut(s)	15, 54, 284, 380
TscAI	CASTG	1 cut(s)	38
TseI	GCWGC	2 cut(s)	490, 493
TspDTI	ATGAA	9 cut(s)	53, 75, 83, 102, 140, 181, 330, 344, 491
TspGWI	ACGGA	1 cut(s)	9
TspRI	CASTG	1 cut(s)	38
VpaK11BI	GGWCC	1 cut(s)	293
XapI	RAATTY	4 cut(s)	146, 172, 229, 382
XspI	CTAG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.