Rorug02G0144300

expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0008653
Physical Location & Seq
Forward (+)
12706594 .. 12708649
2056 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0144300.1

Sequence Viewer

Length: 579 bp
ATGGCGACAGAATCCTCGGAGGGAGAAGAGGAAGGGAAGCTGACGGTAGGGAACCAAGTGCTAATGGTGGAAGACGACCTCCGAGAAATGGGCAAGAACGCCGCCTGGAGCGTCAGCTCTTGGAAGTCTGGCAACGGCGTGTCGTATCTCCTCGACGACAATCTCGACACTTACTGGCAATCGGACGGCGCTCAACCTCACTCGGTCAACATTCAGTTCCAGAAGAAAGTCAAGCTCCAACTTGTTGTTCTCTACGTGGATTTCAAGCTTGATGAGAGCTATACGCCATCGAAGATATCGATTCGTGCTGGGGATGGCTTCCACAACTTGAAGGACATAAAAACCGTTGAGCTCGATAAGCCGAGGGGTTGGGTTCATATATCTCTGTCTGGAAATGATGCAAGGGAAACTTTTGTCAACACATTTATGCTGCAAATCTCTGTGTTATCAAATCACCTTAATGGGAGGGACACGCATGTGCGCCAGATCAAACTATATGGCCCTAGACCGAACCCTATTCCACATCAGCCATTTCAGTTTACTTCAAGGAAGTTCATTACCTATGCTTCTATCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

21.8

Weight (kDa)

6.59

Isoelectric Point (pI)

24.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANAPC10 PF03256 22 - 189 1.4e-73 Anaphase-promoting complex, subunit 10 (APC10)
F5_F8_type_C_2 PF22633 51 - 136 1.1e-06 NedA-like, galactose-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 102
AfiI CCNNNNNNNGG 1 cut(s) 88
AgsI TTSAA 3 cut(s) 265, 331, 546
AjnI CCWGG 1 cut(s) 104
AjuI GAANNNNNNNTTGG 2 cut(s) 231, 263
AleI CACNNNNGTG 1 cut(s) 476
AluBI AGCT 6 cut(s) 40, 117, 235, 268, 279, 352
AluI AGCT 6 cut(s) 40, 117, 235, 268, 279, 352
Alw21I GWGCWC 1 cut(s) 354
AoxI GGCC 1 cut(s) 499
ApeKI GCWGC 1 cut(s) 430
AspLEI GCGC 2 cut(s) 191, 483
AspS9I GGNCC 1 cut(s) 500
AsuHPI GGTGA 1 cut(s) 446
BanII GRGCYC 1 cut(s) 354
BbsI GAAGAC 1 cut(s) 78
Bbv12I GWGCWC 1 cut(s) 354
BbvI GCAGC 1 cut(s) 417
BccI CCATC 2 cut(s) 295, 308
BceAI ACGGC 2 cut(s) 151, 202
BciT130I CCWGG 1 cut(s) 106
BfaI CTAG 1 cut(s) 504
BfoI RGCGCY 1 cut(s) 192
BisI GCNGC 2 cut(s) 102, 431
BlsI GCNGC 2 cut(s) 103, 432
Bme1390I CCNGG 1 cut(s) 106
BmgT120I GGNCC 1 cut(s) 500
BmiI GGNNCC 1 cut(s) 53
BmrFI CCNGG 1 cut(s) 106
BmsI GCATC 1 cut(s) 388
BpiI GAAGAC 1 cut(s) 78
BpmI CTGGAG 1 cut(s) 127
Bsa29I ATCGAT 1 cut(s) 299
BsaAI YACGTR 1 cut(s) 256
BsaJI CCNNGG 2 cut(s) 15, 362
Bsc4I CCNNNNNNNGG 1 cut(s) 88
Bse1I ACTGG 1 cut(s) 179
BseBI CCWGG 1 cut(s) 106
BseCI ATCGAT 1 cut(s) 299
BseDI CCNNGG 2 cut(s) 15, 362
BseGI GGATG 1 cut(s) 319
BseLI CCNNNNNNNGG 1 cut(s) 88
BseNI ACTGG 1 cut(s) 179
BseRI GAGGAG 1 cut(s) 140
BseXI GCAGC 1 cut(s) 417
BseYI CCCAGC 1 cut(s) 308
BshFI GGCC 1 cut(s) 501
BshVI ATCGAT 1 cut(s) 299
BsiHKAI GWGCWC 1 cut(s) 354
BslFI GGGAC 1 cut(s) 482
BslI CCNNNNNNNGG 1 cut(s) 88
BsmFI GGGAC 1 cut(s) 482
BsnI GGCC 1 cut(s) 501
Bsp1286I GDGCHC 1 cut(s) 354
Bsp143I GATC 1 cut(s) 486
BspACI CCGC 1 cut(s) 102
BspANI GGCC 1 cut(s) 501
BspDI ATCGAT 1 cut(s) 299
BspLI GGNNCC 1 cut(s) 53
BsrI ACTGG 1 cut(s) 179
BssECI CCNNGG 2 cut(s) 15, 362
BssMI GATC 1 cut(s) 486
Bst2UI CCWGG 1 cut(s) 106
Bst4CI ACNGT 2 cut(s) 46, 346
Bst6I CTCTTC 1 cut(s) 21
BstBAI YACGTR 1 cut(s) 256
BstF5I GGATG 1 cut(s) 319
BstH2I RGCGCY 1 cut(s) 192
BstHHI GCGC 2 cut(s) 191, 483
BstKTI GATC 1 cut(s) 489
BstMBI GATC 1 cut(s) 486
BstMWI GCNNNNNNNGC 1 cut(s) 358
BstNI CCWGG 1 cut(s) 106
BstNSI RCATGY 1 cut(s) 479
BstSCI CCNGG 1 cut(s) 104
BstV1I GCAGC 1 cut(s) 417
BstV2I GAAGAC 1 cut(s) 78
Bsu15I ATCGAT 1 cut(s) 299
BsuRI GGCC 1 cut(s) 501
BsuTUI ATCGAT 1 cut(s) 299
BtsCI GGATG 1 cut(s) 319
CfoI GCGC 2 cut(s) 191, 483
Cfr13I GGNCC 1 cut(s) 500
ClaI ATCGAT 1 cut(s) 299
CseI GACGC 1 cut(s) 100
CviAII CATG 1 cut(s) 476
DpnI GATC 1 cut(s) 488
DpnII GATC 1 cut(s) 486
Eam1104I CTCTTC 1 cut(s) 21
EarI CTCTTC 1 cut(s) 21
Ecl136II GAGCTC 1 cut(s) 352
Eco24I GRGCYC 1 cut(s) 354
Eco32I GATATC 1 cut(s) 297
Eco53kI GAGCTC 1 cut(s) 352
EcoICRI GAGCTC 1 cut(s) 352
EcoRII CCWGG 1 cut(s) 104
EcoRV GATATC 1 cut(s) 297
EcoT38I GRGCYC 1 cut(s) 354
FaeI CATG 1 cut(s) 479
FaiI YATR 9 cut(s) 282, 338, 378, 380, 428, 477, 496, 498, 564
FalI AAGNNNNNCTT 2 cut(s) 394, 426
FaqI GGGAC 1 cut(s) 482
FatI CATG 1 cut(s) 475
Fnu4HI GCNGC 2 cut(s) 102, 431
FokI GGATG 1 cut(s) 326
FriOI GRGCYC 1 cut(s) 354
Fsp4HI GCNGC 2 cut(s) 102, 431
FspBI CTAG 1 cut(s) 504
GlaI GCGC 2 cut(s) 190, 482
GluI GCNGC 2 cut(s) 102, 431
GsaI CCCAGC 1 cut(s) 312
GsuI CTGGAG 1 cut(s) 127
HaeII RGCGCY 1 cut(s) 192
HaeIII GGCC 1 cut(s) 501
HgaI GACGC 1 cut(s) 100
HhaI GCGC 2 cut(s) 191, 483
Hin1II CATG 1 cut(s) 479
Hin6I GCGC 2 cut(s) 189, 481
HinP1I GCGC 2 cut(s) 189, 481
HincII GTYRAC 2 cut(s) 208, 418
HindII GTYRAC 2 cut(s) 208, 418
HindIII AAGCTT 1 cut(s) 266
HinfI GANTC 2 cut(s) 11, 301
HphI GGTGA 1 cut(s) 446
Hpy166II GTNNAC 3 cut(s) 208, 418, 540
Hpy188I TCNGA 4 cut(s) 19, 83, 184, 575
Hpy188III TCNNGA 3 cut(s) 164, 220, 390
Hpy8I GTNNAC 3 cut(s) 208, 418, 540
Hpy99I CGWCG 1 cut(s) 158
HpyAV CCTTC 2 cut(s) 26, 325
HpyCH4III ACNGT 2 cut(s) 46, 346
HpyCH4IV ACGT 1 cut(s) 255
HpyCH4V TGCA 2 cut(s) 401, 433
HpyF10VI GCNNNNNNNGC 1 cut(s) 358
HpySE526I ACGT 1 cut(s) 255
Hsp92II CATG 1 cut(s) 479
HspAI GCGC 2 cut(s) 189, 481
Kzo9I GATC 1 cut(s) 486
LmnI GCTCC 2 cut(s) 108, 240
LpnPI CCDG 8 cut(s) 91, 114, 118, 160, 233, 294, 375, 497
Lsp1109I GCAGC 1 cut(s) 417
LweI GCATC 1 cut(s) 388
MaeI CTAG 1 cut(s) 504
MaeII ACGT 1 cut(s) 255
MalI GATC 1 cut(s) 488
MboI GATC 1 cut(s) 486
MboII GAAGA 4 cut(s) 38, 83, 235, 304
MhlI GDGCHC 1 cut(s) 354
MmeI TCCRAC 1 cut(s) 262
MnlI CCTC 8 cut(s) 13, 22, 25, 89, 161, 207, 357, 459
MseI TTAA 1 cut(s) 459
MslI CAYNNNNRTG 3 cut(s) 425, 459, 476
MspR9I CCNGG 1 cut(s) 106
MvaI CCWGG 1 cut(s) 106
MwoI GCNNNNNNNGC 1 cut(s) 358
NdeII GATC 1 cut(s) 486
NlaIII CATG 1 cut(s) 479
NlaIV GGNNCC 1 cut(s) 53
NmeAIII GCCGAG 1 cut(s) 387
NspI RCATGY 1 cut(s) 479
OliI CACNNNNGTG 1 cut(s) 476
PcsI WCGNNNNNNNCGW 2 cut(s) 162, 296
PfeI GAWTC 2 cut(s) 11, 301
PkrI GCNGC 2 cut(s) 103, 432
Ppu21I YACGTR 1 cut(s) 256
Psp124BI GAGCTC 1 cut(s) 354
Psp6I CCWGG 1 cut(s) 104
PspFI CCCAGC 1 cut(s) 308
PspGI CCWGG 1 cut(s) 104
PspN4I GGNNCC 1 cut(s) 53
PspPI GGNCC 1 cut(s) 500
RseI CAYNNNNRTG 3 cut(s) 425, 459, 476
SacI GAGCTC 1 cut(s) 354
SaqAI TTAA 1 cut(s) 459
SatI GCNGC 2 cut(s) 102, 431
Sau3AI GATC 1 cut(s) 486
Sau96I GGNCC 1 cut(s) 500
ScrFI CCNGG 1 cut(s) 106
SduI GDGCHC 1 cut(s) 354
SfaNI GCATC 1 cut(s) 388
SmiMI CAYNNNNRTG 3 cut(s) 425, 459, 476
SsiI CCGC 1 cut(s) 102
SspMI CTAG 1 cut(s) 504
SstI GAGCTC 1 cut(s) 354
StyD4I CCNGG 1 cut(s) 104
TaaI ACNGT 2 cut(s) 46, 346
TaiI ACGT 1 cut(s) 258
TaqI TCGA 5 cut(s) 153, 165, 290, 299, 354
TaqII GACCGA 2 cut(s) 193, 523
TauI GCSGC 1 cut(s) 104
TfiI GAWTC 2 cut(s) 11, 301
Tru1I TTAA 1 cut(s) 459
Tru9I TTAA 1 cut(s) 459
TseI GCWGC 1 cut(s) 430
TspDTI ATGAA 2 cut(s) 365, 544
XceI RCATGY 1 cut(s) 479
XspI CTAG 1 cut(s) 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.