Prupe.6G223500_v2.0.a1

expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0008653
Physical Location & Seq
Forward (+)
22856432 .. 22859261
2830 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G223500.2

Sequence Viewer

Length: 672 bp
ATGGAGAAGCTTCTTAAGCCATATGATAAGGAGTGCATGAGGATGGCCATTTTAAAGCATGAAGAAACATTCAAAGAGCAGGTATATGAACTTCATCGTCTATATCATATCCAGAAGATATTGATGAAGAGTTCCATTGGTAAAAGTAGGCCAAAGGGACAGAAACAAGAGAGTTGGAATTTAAAGAATGAAACCAGCTTCAGTCAGTTGAATTATCATCAGCATGAGGCACAACAGTTTAACCCACAAAGGAAACTAGATTTAGAACAGCCTGCGGCAGCAGCAGAAGAGTACATTGCAGAGACAGATGGAGATGATGGGGTGTTAGAGATCATAGATGAGAGTGAGATTGAGTTGACTCTGGGCCCCACTAGATACAACAACAACACCATCACCACCACCAACAGAAGGAAGAGAGGAGAGGCACCACTAACATCAGATTCAGGGCCAAGTTTCTCTTCTTCTTCCACTGGATCAAGCCATGTAAACAGGACAAGTAGTTCCAGGACCCATCAGAGAAAACATGGCCAGGTGCCTGACATGACCTCAGGGTACAGAAATGGAAGTAAAAACAGCAGCAATATTGATCCTGTTGAAGAACAATTGAGACAGGATGAGAGGCTACAACTGCCTCCATGGTTTTTCCAAGTTTTGAGCTTGAACATGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

224

Amino Acids

25.66

Weight (kDa)

6.46

Isoelectric Point (pI)

54.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 70
AccB1I GGYRCC 2 cut(s) 424, 532
AciI CCGC 1 cut(s) 275
AclWI GGATC 2 cut(s) 481, 581
AcoI YGGCCR 2 cut(s) 45, 526
AcsI RAATTY 1 cut(s) 178
AcuI CTGAAG 1 cut(s) 184
AfaI GTAC 2 cut(s) 293, 554
AfiI CCNNNNNNNGG 1 cut(s) 408
AflII CTTAAG 1 cut(s) 14
AgsI TTSAA 4 cut(s) 73, 211, 596, 661
AjnI CCWGG 2 cut(s) 503, 528
AjuI GAANNNNNNNTTGG 2 cut(s) 442, 474
AloI GAACNNNNNNTCC 2 cut(s) 484, 516
AluBI AGCT 3 cut(s) 10, 198, 657
AluI AGCT 3 cut(s) 10, 198, 657
Alw26I GTCTC 2 cut(s) 296, 601
AlwI GGATC 2 cut(s) 481, 581
AoxI GGCC 5 cut(s) 45, 149, 364, 446, 526
ApaI GGGCCC 1 cut(s) 368
ApeKI GCWGC 3 cut(s) 278, 281, 576
ApoI RAATTY 1 cut(s) 178
AspS9I GGNCC 4 cut(s) 364, 365, 446, 507
AsuHPI GGTGA 1 cut(s) 385
AvaII GGWCC 1 cut(s) 507
AxyI CCTNAGG 1 cut(s) 547
BaeGI GKGCMC 1 cut(s) 368
BalI TGGCCA 2 cut(s) 47, 528
BanI GGYRCC 2 cut(s) 424, 532
BanII GRGCYC 1 cut(s) 368
BarI GAAGNNNNNNTAC 2 cut(s) 75, 107
BbvI GCAGC 3 cut(s) 290, 293, 588
BccI CCATC 5 cut(s) 37, 302, 311, 398, 519
BciT130I CCWGG 2 cut(s) 505, 530
BcoDI GTCTC 2 cut(s) 296, 601
BfaI CTAG 2 cut(s) 257, 372
BfrI CTTAAG 1 cut(s) 14
BfuAI ACCTGC 1 cut(s) 70
BisI GCNGC 4 cut(s) 276, 279, 282, 577
BlsI GCNGC 4 cut(s) 277, 280, 283, 578
Bme1390I CCNGG 2 cut(s) 505, 530
Bme18I GGWCC 1 cut(s) 507
BmgT120I GGNCC 4 cut(s) 364, 365, 446, 507
BmiI GGNNCC 5 cut(s) 366, 367, 426, 509, 534
BmrFI CCNGG 2 cut(s) 505, 530
BsaJI CCNNGG 1 cut(s) 635
Bsc4I CCNNNNNNNGG 1 cut(s) 408
Bse1I ACTGG 1 cut(s) 475
Bse21I CCTNAGG 1 cut(s) 547
Bse3DI GCAATG 1 cut(s) 294
BseBI CCWGG 2 cut(s) 505, 530
BseDI CCNNGG 1 cut(s) 635
BseGI GGATG 2 cut(s) 48, 619
BseLI CCNNNNNNNGG 1 cut(s) 408
BseMI GCAATG 1 cut(s) 294
BseMII CTCAG 1 cut(s) 561
BseNI ACTGG 1 cut(s) 475
BseRI GAGGAG 1 cut(s) 432
BseSI GKGCMC 1 cut(s) 368
BseXI GCAGC 3 cut(s) 290, 293, 588
BshFI GGCC 5 cut(s) 47, 151, 366, 448, 528
BshNI GGYRCC 2 cut(s) 424, 532
BslFI GGGAC 1 cut(s) 171
BslI CCNNNNNNNGG 1 cut(s) 408
BsmAI GTCTC 2 cut(s) 296, 601
BsmFI GGGAC 1 cut(s) 171
BsnI GGCC 5 cut(s) 47, 151, 366, 448, 528
Bsp120I GGGCCC 1 cut(s) 364
Bsp1286I GDGCHC 1 cut(s) 368
Bsp143I GATC 3 cut(s) 330, 473, 586
Bsp19I CCATGG 1 cut(s) 635
BspACI CCGC 1 cut(s) 275
BspANI GGCC 5 cut(s) 47, 151, 366, 448, 528
BspCNI CTCAG 1 cut(s) 560
BspLI GGNNCC 5 cut(s) 366, 367, 426, 509, 534
BspMI ACCTGC 1 cut(s) 70
BspPI GGATC 2 cut(s) 481, 581
BspT107I GGYRCC 2 cut(s) 424, 532
BspTI CTTAAG 1 cut(s) 14
BsrDI GCAATG 1 cut(s) 294
BsrI ACTGG 1 cut(s) 475
BssECI CCNNGG 1 cut(s) 635
BssMI GATC 3 cut(s) 330, 473, 586
BssT1I CCWWGG 1 cut(s) 635
Bst2UI CCWGG 2 cut(s) 505, 530
Bst4CI ACNGT 1 cut(s) 237
Bst6I CTCTTC 4 cut(s) 122, 282, 407, 463
BstAFI CTTAAG 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 273
BstDEI CTNAG 1 cut(s) 547
BstDSI CCRYGG 1 cut(s) 635
BstF5I GGATG 2 cut(s) 48, 619
BstKTI GATC 3 cut(s) 333, 476, 589
BstMAI GTCTC 2 cut(s) 296, 601
BstMBI GATC 3 cut(s) 330, 473, 586
BstMWI GCNNNNNNNGC 3 cut(s) 16, 281, 628
BstNI CCWGG 2 cut(s) 505, 530
BstSCI CCNGG 2 cut(s) 503, 528
BstSLI GKGCMC 1 cut(s) 368
BstV1I GCAGC 3 cut(s) 290, 293, 588
Bsu36I CCTNAGG 1 cut(s) 547
BsuRI GGCC 5 cut(s) 47, 151, 366, 448, 528
BtgI CCRYGG 1 cut(s) 635
BtsCI GGATG 2 cut(s) 48, 619
BtsIMutI CAGTG 1 cut(s) 468
BveI ACCTGC 1 cut(s) 70
Cac8I GCNNGC 1 cut(s) 273
Cfr13I GGNCC 4 cut(s) 364, 365, 446, 507
Csp6I GTAC 2 cut(s) 292, 553
CviAII CATG 8 cut(s) 37, 59, 224, 482, 524, 541, 636, 664
CviQI GTAC 2 cut(s) 292, 553
DdeI CTNAG 1 cut(s) 547
DpnI GATC 3 cut(s) 332, 475, 588
DpnII GATC 3 cut(s) 330, 473, 586
DraI TTTAAA 2 cut(s) 54, 183
EaeI YGGCCR 2 cut(s) 45, 526
Eam1104I CTCTTC 4 cut(s) 122, 282, 407, 463
EarI CTCTTC 4 cut(s) 122, 282, 407, 463
Eco130I CCWWGG 1 cut(s) 635
Eco24I GRGCYC 1 cut(s) 368
Eco47I GGWCC 1 cut(s) 507
Eco57I CTGAAG 1 cut(s) 184
Eco81I CCTNAGG 1 cut(s) 547
EcoO109I RGGNCCY 2 cut(s) 365, 507
EcoRII CCWGG 2 cut(s) 503, 528
EcoT14I CCWWGG 1 cut(s) 635
EcoT38I GRGCYC 1 cut(s) 368
ErhI CCWWGG 1 cut(s) 635
FaeI CATG 8 cut(s) 40, 62, 227, 485, 527, 544, 639, 667
FalI AAGNNNNNCTT 2 cut(s) 442, 474
FaqI GGGAC 1 cut(s) 171
FatI CATG 8 cut(s) 36, 58, 223, 481, 523, 540, 635, 663
FauNDI CATATG 1 cut(s) 22
Fnu4HI GCNGC 4 cut(s) 276, 279, 282, 577
FokI GGATG 2 cut(s) 55, 626
FriOI GRGCYC 1 cut(s) 368
Fsp4HI GCNGC 4 cut(s) 276, 279, 282, 577
FspBI CTAG 2 cut(s) 257, 372
GluI GCNGC 4 cut(s) 276, 279, 282, 577
HaeIII GGCC 5 cut(s) 47, 151, 366, 448, 528
Hin1II CATG 8 cut(s) 40, 62, 227, 485, 527, 544, 639, 667
HincII GTYRAC 1 cut(s) 357
HindII GTYRAC 1 cut(s) 357
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 2 cut(s) 358, 440
HphI GGTGA 1 cut(s) 385
Hpy166II GTNNAC 2 cut(s) 357, 487
Hpy188I TCNGA 2 cut(s) 439, 516
Hpy188III TCNNGA 1 cut(s) 112
Hpy8I GTNNAC 2 cut(s) 357, 487
HpyAV CCTTC 1 cut(s) 402
HpyCH4III ACNGT 1 cut(s) 237
HpyCH4V TGCA 2 cut(s) 36, 299
HpyF10VI GCNNNNNNNGC 3 cut(s) 16, 281, 628
HpyF3I CTNAG 1 cut(s) 547
Hsp92II CATG 8 cut(s) 40, 62, 227, 485, 527, 544, 639, 667
Kzo9I GATC 3 cut(s) 330, 473, 586
Lsp1109I GCAGC 3 cut(s) 290, 293, 588
MaeI CTAG 2 cut(s) 257, 372
MalI GATC 3 cut(s) 332, 475, 588
MboI GATC 3 cut(s) 330, 473, 586
MboII GAAGA 9 cut(s) 74, 127, 139, 299, 424, 450, 453, 456, 608
MfeI CAATTG 1 cut(s) 602
MhlI GDGCHC 1 cut(s) 368
MlsI TGGCCA 2 cut(s) 47, 528
MluCI AATT 3 cut(s) 178, 211, 602
MluNI TGGCCA 2 cut(s) 47, 528
MlyI GAGTC 1 cut(s) 352
MmeI TCCRAC 1 cut(s) 155
MnlI CCTC 7 cut(s) 33, 220, 410, 415, 556, 612, 642
Mox20I TGGCCA 2 cut(s) 47, 528
MscI TGGCCA 2 cut(s) 47, 528
MseI TTAA 4 cut(s) 15, 53, 182, 240
MslI CAYNNNNRTG 2 cut(s) 41, 222
Msp20I TGGCCA 2 cut(s) 47, 528
MspCI CTTAAG 1 cut(s) 14
MspR9I CCNGG 2 cut(s) 505, 530
MunI CAATTG 1 cut(s) 602
MvaI CCWGG 2 cut(s) 505, 530
MwoI GCNNNNNNNGC 3 cut(s) 16, 281, 628
NcoI CCATGG 1 cut(s) 635
NdeI CATATG 1 cut(s) 22
NdeII GATC 3 cut(s) 330, 473, 586
NlaIII CATG 8 cut(s) 40, 62, 227, 485, 527, 544, 639, 667
NlaIV GGNNCC 5 cut(s) 366, 367, 426, 509, 534
PfeI GAWTC 1 cut(s) 440
PfoI TCCNGGA 1 cut(s) 503
PkrI GCNGC 4 cut(s) 277, 280, 283, 578
PleI GAGTC 1 cut(s) 352
PpsI GAGTC 1 cut(s) 352
PpuMI RGGWCCY 1 cut(s) 507
Psp5II RGGWCCY 1 cut(s) 507
Psp6I CCWGG 2 cut(s) 503, 528
PspGI CCWGG 2 cut(s) 503, 528
PspN4I GGNNCC 5 cut(s) 366, 367, 426, 509, 534
PspOMI GGGCCC 1 cut(s) 364
PspPI GGNCC 4 cut(s) 364, 365, 446, 507
PspPPI RGGWCCY 1 cut(s) 507
RsaI GTAC 2 cut(s) 293, 554
RsaNI GTAC 2 cut(s) 292, 553
RseI CAYNNNNRTG 2 cut(s) 41, 222
SaqAI TTAA 4 cut(s) 15, 53, 182, 240
SatI GCNGC 4 cut(s) 276, 279, 282, 577
Sau3AI GATC 3 cut(s) 330, 473, 586
Sau96I GGNCC 4 cut(s) 364, 365, 446, 507
SchI GAGTC 1 cut(s) 352
ScrFI CCNGG 2 cut(s) 505, 530
SduI GDGCHC 1 cut(s) 368
SetI ASST 6 cut(s) 12, 84, 200, 534, 548, 659
SinI GGWCC 1 cut(s) 507
SmiMI CAYNNNNRTG 2 cut(s) 41, 222
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
Sse9I AATT 3 cut(s) 178, 211, 602
SsiI CCGC 1 cut(s) 275
SspI AATATT 1 cut(s) 583
SspMI CTAG 2 cut(s) 257, 372
StyD4I CCNGG 2 cut(s) 503, 528
StyI CCWWGG 1 cut(s) 635
TaaI ACNGT 1 cut(s) 237
TasI AATT 3 cut(s) 178, 211, 602
TatI WGTACW 1 cut(s) 291
TauI GCSGC 1 cut(s) 278
TfiI GAWTC 1 cut(s) 440
Tru1I TTAA 4 cut(s) 15, 53, 182, 240
Tru9I TTAA 4 cut(s) 15, 53, 182, 240
TscAI CASTG 1 cut(s) 475
TseI GCWGC 3 cut(s) 278, 281, 576
TspDTI ATGAA 5 cut(s) 75, 83, 102, 140, 204
TspRI CASTG 1 cut(s) 475
Vha464I CTTAAG 1 cut(s) 14
VpaK11BI GGWCC 1 cut(s) 507
XapI RAATTY 1 cut(s) 178
XspI CTAG 2 cut(s) 257, 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.