Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0008653

Physical Location & Seq

Genomic Coordinates Forward (+)

74045063 .. 74046145

Gene Structure 1083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00136290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGAGAAGCTTGTTAATCCATATGATAAGGAGTGCATGAGAATGGCCATTTTAAAGCACGAAGAAACATTCAAGGAGCAGGTATATGAACTTCATAGGCTATACCATATCCAGAAGTTATTGATGAACGGCTCAATAGGTAAAAGCAGGCCTAAAGGAAACAAAAGAGAGAGTTGGGATTTACAGAATGAAATCAGTTTCAGTCACCAACTGAATTATGAGCTGCAAAGAAAGCTAGATTTAGAACAGCCTGCAGAAGCAGCAGCAGCTGCAGAAGAGTTGGAGGTCATAGATGAGAGTGAGATTGAGTTGACTCTGGGACCCACAAGATACAACAAAAACAGAAGGAAGAAATCAGAAGCACAACTAACTTCAGATTCAGGGCCAAGTTTCTCTTCTTCTTCTACTGGATCAAGCCATGTGAACAGGACAGGTTCAAGGATTCATTATCAGAGGAGAAGTAAAGAGCAATTGGGTGGGTGTGAAGAGCAATTGAGACAGGATGAGAGGCTCAAACTGCCTCCTTGGCTTTTCCAAGTTTTGAGCTTGAACATGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

186

Amino Acids

21.62

Weight (kDa)

7.03

Isoelectric Point (pI)

65.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008653)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67390 AT5G67390 AT5G67390
fragaria_vesca	FvH4_1g17290
malus_domestica	MD02G1182600.v1.1 MD15G1293900.v1.1
prunus_persica	Prupe.6G223500_v2.0.a1 Prupe.6G223500_v2.0.a1
pyrus_communis	pycom02g14810 pycom15g25700
rosa_chinensis	RchiOBHm_Chr2g0107481
rosa_laevigata	RLG00000017582
rosa_multiflora	Rmu_sc0005152.1_g000006
rosa_roxburghii	Rroxscaffold_2G00136290
rosa_rugosa	Rorug02G0144200 Rorug02G0144300 Rorug02G0144300 Rorug02G0144400
rosa_samantha	Rh2AG194100 Rh2BG206300 Rh2CG199300 Rh2DG201300
rosa_wichuraiana	Rw2G015380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	70
AclWI	GGATC	1 cut(s)	418
AcoI	YGGCCR	1 cut(s)	45
AcuI	CTGAAG	1 cut(s)	357
AgsI	TTSAA	3 cut(s)	73, 438, 550
AjuI	GAANNNNNNNTTGG	2 cut(s)	379, 411
AluBI	AGCT	5 cut(s)	10, 223, 235, 269, 546
AluI	AGCT	5 cut(s)	10, 223, 235, 269, 546
Alw26I	GTCTC	1 cut(s)	490
AlwI	GGATC	1 cut(s)	418
AlwNI	CAGNNNCTG	1 cut(s)	269
AoxI	GGCC	3 cut(s)	45, 149, 383
ApeKI	GCWGC	5 cut(s)	223, 260, 263, 266, 269
AspS9I	GGNCC	2 cut(s)	320, 383
AsuHPI	GGTGA	1 cut(s)	197
AvaII	GGWCC	1 cut(s)	320
BalI	TGGCCA	1 cut(s)	47
BarI	GAAGNNNNNNTAC	2 cut(s)	75, 107
BbvI	GCAGC	5 cut(s)	210, 256, 272, 275, 278
BceAI	ACGGC	1 cut(s)	145
BcoDI	GTCTC	1 cut(s)	490
BfaI	CTAG	1 cut(s)	236
BfmI	CTRYAG	2 cut(s)	252, 270
BfuAI	ACCTGC	1 cut(s)	70
BglI	GCCNNNNNGGC	1 cut(s)	526
BisI	GCNGC	5 cut(s)	224, 261, 264, 267, 270
BlsI	GCNGC	5 cut(s)	225, 262, 265, 268, 271
Bme18I	GGWCC	1 cut(s)	320
BmgT120I	GGNCC	2 cut(s)	320, 383
BmiI	GGNNCC	2 cut(s)	321, 322
BsaJI	CCNNGG	1 cut(s)	524
Bse1I	ACTGG	1 cut(s)	412
BseDI	CCNNGG	1 cut(s)	524
BseGI	GGATG	1 cut(s)	508
BseNI	ACTGG	1 cut(s)	412
BseRI	GAGGAG	1 cut(s)	469
BseXI	GCAGC	5 cut(s)	210, 256, 272, 275, 278
BshFI	GGCC	3 cut(s)	47, 151, 385
BslFI	GGGAC	1 cut(s)	333
BsmAI	GTCTC	1 cut(s)	490
BsmFI	GGGAC	1 cut(s)	333
BsnI	GGCC	3 cut(s)	47, 151, 385
Bsp143I	GATC	1 cut(s)	410
BspANI	GGCC	3 cut(s)	47, 151, 385
BspLI	GGNNCC	2 cut(s)	321, 322
BspMAI	CTGCAG	2 cut(s)	256, 274
BspMI	ACCTGC	1 cut(s)	70
BspPI	GGATC	1 cut(s)	418
BspQI	GCTCTTC	1 cut(s)	480
BsrI	ACTGG	1 cut(s)	412
BssECI	CCNNGG	1 cut(s)	524
BssMI	GATC	1 cut(s)	410
BssT1I	CCWWGG	1 cut(s)	524
Bst6I	CTCTTC	3 cut(s)	270, 400, 480
BstAPI	GCANNNNNTGC	1 cut(s)	269
BstC8I	GCNNGC	2 cut(s)	149, 252
BstF5I	GGATG	1 cut(s)	508
BstKTI	GATC	1 cut(s)	413
BstMAI	GTCTC	1 cut(s)	490
BstMBI	GATC	1 cut(s)	410
BstMWI	GCNNNNNNNGC	6 cut(s)	232, 260, 266, 269, 517, 526
BstSFI	CTRYAG	2 cut(s)	252, 270
BstV1I	GCAGC	5 cut(s)	210, 256, 272, 275, 278
BsuRI	GGCC	3 cut(s)	47, 151, 385
BtsCI	GGATG	1 cut(s)	508
BveI	ACCTGC	1 cut(s)	70
Cac8I	GCNNGC	2 cut(s)	149, 252
CaiI	CAGNNNCTG	1 cut(s)	269
Cfr13I	GGNCC	2 cut(s)	320, 383
CviAII	CATG	3 cut(s)	37, 419, 553
DpnI	GATC	1 cut(s)	412
DpnII	GATC	1 cut(s)	410
DraI	TTTAAA	1 cut(s)	54
EaeI	YGGCCR	1 cut(s)	45
Eam1104I	CTCTTC	3 cut(s)	270, 400, 480
EarI	CTCTTC	3 cut(s)	270, 400, 480
Eco130I	CCWWGG	1 cut(s)	524
Eco147I	AGGCCT	1 cut(s)	151
Eco47I	GGWCC	1 cut(s)	320
Eco57I	CTGAAG	1 cut(s)	357
EcoO109I	RGGNCCY	1 cut(s)	320
EcoT14I	CCWWGG	1 cut(s)	524
ErhI	CCWWGG	1 cut(s)	524
FaeI	CATG	3 cut(s)	40, 422, 556
FalI	AAGNNNNNCTT	2 cut(s)	379, 411
FaqI	GGGAC	1 cut(s)	333
FatI	CATG	3 cut(s)	36, 418, 552
FauNDI	CATATG	1 cut(s)	22
Fnu4HI	GCNGC	5 cut(s)	224, 261, 264, 267, 270
FokI	GGATG	1 cut(s)	515
Fsp4HI	GCNGC	5 cut(s)	224, 261, 264, 267, 270
FspBI	CTAG	1 cut(s)	236
GluI	GCNGC	5 cut(s)	224, 261, 264, 267, 270
HaeIII	GGCC	3 cut(s)	47, 151, 385
Hin1II	CATG	3 cut(s)	40, 422, 556
HincII	GTYRAC	1 cut(s)	312
HindII	GTYRAC	1 cut(s)	312
HindIII	AAGCTT	1 cut(s)	8
HinfI	GANTC	3 cut(s)	313, 377, 442
HphI	GGTGA	1 cut(s)	197
Hpy166II	GTNNAC	2 cut(s)	312, 424
Hpy188I	TCNGA	3 cut(s)	358, 376, 453
Hpy188III	TCNNGA	1 cut(s)	112
Hpy8I	GTNNAC	2 cut(s)	312, 424
HpyAV	CCTTC	1 cut(s)	339
HpyCH4V	TGCA	4 cut(s)	36, 226, 254, 272
HpyF10VI	GCNNNNNNNGC	6 cut(s)	232, 260, 266, 269, 517, 526
Hsp92II	CATG	3 cut(s)	40, 422, 556
KflI	GGGWCCC	1 cut(s)	320
Kzo9I	GATC	1 cut(s)	410
LguI	GCTCTTC	1 cut(s)	480
LmnI	GCTCC	1 cut(s)	76
Lsp1109I	GCAGC	5 cut(s)	210, 256, 272, 275, 278
MaeI	CTAG	1 cut(s)	236
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	1 cut(s)	412
MboI	GATC	1 cut(s)	410
MboII	GAAGA	7 cut(s)	74, 287, 361, 387, 390, 393, 497
MfeI	CAATTG	2 cut(s)	470, 491
MlsI	TGGCCA	1 cut(s)	47
MluCI	AATT	3 cut(s)	214, 470, 491
MluNI	TGGCCA	1 cut(s)	47
MlyI	GAGTC	1 cut(s)	307
MmeI	TCCRAC	1 cut(s)	261
MnlI	CCTC	4 cut(s)	277, 447, 501, 531
Mox20I	TGGCCA	1 cut(s)	47
MscI	TGGCCA	1 cut(s)	47
MseI	TTAA	2 cut(s)	15, 53
MslI	CAYNNNNRTG	1 cut(s)	41
Msp20I	TGGCCA	1 cut(s)	47
MspA1I	CMGCKG	1 cut(s)	269
MunI	CAATTG	2 cut(s)	470, 491
MwoI	GCNNNNNNNGC	6 cut(s)	232, 260, 266, 269, 517, 526
NdeI	CATATG	1 cut(s)	22
NdeII	GATC	1 cut(s)	410
NlaIII	CATG	3 cut(s)	40, 422, 556
NlaIV	GGNNCC	2 cut(s)	321, 322
NmuCI	GTSAC	1 cut(s)	203
PceI	AGGCCT	1 cut(s)	151
PciSI	GCTCTTC	1 cut(s)	480
PfeI	GAWTC	2 cut(s)	377, 442
PkrI	GCNGC	5 cut(s)	225, 262, 265, 268, 271
PleI	GAGTC	1 cut(s)	307
PpsI	GAGTC	1 cut(s)	307
PpuMI	RGGWCCY	1 cut(s)	320
Psp5II	RGGWCCY	1 cut(s)	320
PspN4I	GGNNCC	2 cut(s)	321, 322
PspPI	GGNCC	2 cut(s)	320, 383
PspPPI	RGGWCCY	1 cut(s)	320
PstI	CTGCAG	2 cut(s)	256, 274
PstNI	CAGNNNCTG	1 cut(s)	269
PvuII	CAGCTG	1 cut(s)	269
RseI	CAYNNNNRTG	1 cut(s)	41
SapI	GCTCTTC	1 cut(s)	480
SaqAI	TTAA	2 cut(s)	15, 53
SatI	GCNGC	5 cut(s)	224, 261, 264, 267, 270
Sau3AI	GATC	1 cut(s)	410
Sau96I	GGNCC	2 cut(s)	320, 383
SchI	GAGTC	1 cut(s)	307
SetI	ASST	9 cut(s)	12, 84, 142, 225, 237, 271, 288, 436, 548
SfcI	CTRYAG	2 cut(s)	252, 270
SinI	GGWCC	1 cut(s)	320
SmiMI	CAYNNNNRTG	1 cut(s)	41
Sse9I	AATT	3 cut(s)	214, 470, 491
SseBI	AGGCCT	1 cut(s)	151
SspMI	CTAG	1 cut(s)	236
StuI	AGGCCT	1 cut(s)	151
StyI	CCWWGG	1 cut(s)	524
TasI	AATT	3 cut(s)	214, 470, 491
TfiI	GAWTC	2 cut(s)	377, 442
Tru1I	TTAA	2 cut(s)	15, 53
Tru9I	TTAA	2 cut(s)	15, 53
TseFI	GTSAC	1 cut(s)	203
TseI	GCWGC	5 cut(s)	223, 260, 263, 266, 269
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	5 cut(s)	83, 102, 140, 204, 434
VpaK11BI	GGWCC	1 cut(s)	320
XspI	CTAG	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.