Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0008653

Physical Location & Seq

Genomic Coordinates Reverse (-)

18493993 .. 18494665

Gene Structure 673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017582

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGAGAAGCTTCTTAATCCATATGATAAGGAGTGCATGAGAATGGCCATTTTAAAGCACGAAGAAACATTCAAGGAGCAGGTATATGAACTTCATAGGCTATACCATATCCAGAAGTTATTGATGAACAGTTCAATAGGTAAAAGCGCCTCTAAAGGAAACAAAAGAGAGAGTTGGGATTTACAGAATGAAATCAGTTTCAGTCACCAATTGAATTATGAGCTGCAAAGAAAGCTAGATTTAGAACAGCCTGCAGAAGCAGCAGCAGCAGAAGAGTTGGAGGTCATAGATGAGAGTGAGATTGAGTTGACTCTGGGACCCACAAGATACAACAAAAACAGAAGGAAGAAATCAGAAGCACAACTAACTTCAGATTCAGGGCCAAGTTTCTCTTCTTCTTCTACTGGATCAAGCCATGTGAACAGGACAGGTTCAAGGACTCATTATCAGAGGAGGAGTAAAGAACAATTGGGTGGGTGTGAAGAGCAATTGAGACAGGATGAGAGGCTCAAACTGCCTCCTTGGCTTTTCCAAGTTTTGAGCTTGAACATGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

186

Amino Acids

21.49

Weight (kDa)

6.61

Isoelectric Point (pI)

64.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008653)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67390 AT5G67390 AT5G67390
fragaria_vesca	FvH4_1g17290
malus_domestica	MD02G1182600.v1.1 MD15G1293900.v1.1
prunus_persica	Prupe.6G223500_v2.0.a1 Prupe.6G223500_v2.0.a1
pyrus_communis	pycom02g14810 pycom15g25700
rosa_chinensis	RchiOBHm_Chr2g0107481
rosa_laevigata	RLG00000017582
rosa_multiflora	Rmu_sc0005152.1_g000006
rosa_roxburghii	Rroxscaffold_2G00136290
rosa_rugosa	Rorug02G0144200 Rorug02G0144300 Rorug02G0144300 Rorug02G0144400
rosa_samantha	Rh2AG194100 Rh2BG206300 Rh2CG199300 Rh2DG201300
rosa_wichuraiana	Rw2G015380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	70
AclWI	GGATC	1 cut(s)	415
AcoI	YGGCCR	1 cut(s)	45
AcuI	CTGAAG	1 cut(s)	354
AgsI	TTSAA	5 cut(s)	73, 135, 214, 435, 547
AjuI	GAANNNNNNNTTGG	2 cut(s)	376, 408
AluBI	AGCT	4 cut(s)	10, 223, 235, 543
AluI	AGCT	4 cut(s)	10, 223, 235, 543
Alw26I	GTCTC	1 cut(s)	487
AlwI	GGATC	1 cut(s)	415
AoxI	GGCC	2 cut(s)	45, 380
ApeKI	GCWGC	4 cut(s)	223, 260, 263, 266
AspLEI	GCGC	1 cut(s)	149
AspS9I	GGNCC	2 cut(s)	317, 380
AsuHPI	GGTGA	1 cut(s)	197
AvaII	GGWCC	1 cut(s)	317
BalI	TGGCCA	1 cut(s)	47
BarI	GAAGNNNNNNTAC	2 cut(s)	75, 107
BbvI	GCAGC	4 cut(s)	210, 272, 275, 278
BcoDI	GTCTC	1 cut(s)	487
BfaI	CTAG	1 cut(s)	236
BfmI	CTRYAG	1 cut(s)	252
BfoI	RGCGCY	1 cut(s)	150
BfuAI	ACCTGC	1 cut(s)	70
BglI	GCCNNNNNGGC	1 cut(s)	523
BisI	GCNGC	4 cut(s)	224, 261, 264, 267
BlsI	GCNGC	4 cut(s)	225, 262, 265, 268
Bme18I	GGWCC	1 cut(s)	317
BmgT120I	GGNCC	2 cut(s)	317, 380
BmiI	GGNNCC	2 cut(s)	318, 319
BsaJI	CCNNGG	1 cut(s)	521
Bse1I	ACTGG	1 cut(s)	409
BseDI	CCNNGG	1 cut(s)	521
BseGI	GGATG	1 cut(s)	505
BseNI	ACTGG	1 cut(s)	409
BseRI	GAGGAG	2 cut(s)	466, 469
BseXI	GCAGC	4 cut(s)	210, 272, 275, 278
BshFI	GGCC	2 cut(s)	47, 382
BslFI	GGGAC	1 cut(s)	330
BsmAI	GTCTC	1 cut(s)	487
BsmFI	GGGAC	1 cut(s)	330
BsnI	GGCC	2 cut(s)	47, 382
Bsp143I	GATC	1 cut(s)	407
BspANI	GGCC	2 cut(s)	47, 382
BspLI	GGNNCC	2 cut(s)	318, 319
BspMAI	CTGCAG	1 cut(s)	256
BspMI	ACCTGC	1 cut(s)	70
BspPI	GGATC	1 cut(s)	415
BspQI	GCTCTTC	1 cut(s)	477
BsrI	ACTGG	1 cut(s)	409
BssECI	CCNNGG	1 cut(s)	521
BssMI	GATC	1 cut(s)	407
BssT1I	CCWWGG	1 cut(s)	521
Bst4CI	ACNGT	1 cut(s)	131
Bst6I	CTCTTC	3 cut(s)	267, 397, 477
BstC8I	GCNNGC	1 cut(s)	252
BstF5I	GGATG	1 cut(s)	505
BstH2I	RGCGCY	1 cut(s)	150
BstHHI	GCGC	1 cut(s)	149
BstKTI	GATC	1 cut(s)	410
BstMAI	GTCTC	1 cut(s)	487
BstMBI	GATC	1 cut(s)	407
BstMWI	GCNNNNNNNGC	5 cut(s)	232, 260, 266, 514, 523
BstSFI	CTRYAG	1 cut(s)	252
BstV1I	GCAGC	4 cut(s)	210, 272, 275, 278
BsuRI	GGCC	2 cut(s)	47, 382
BtsCI	GGATG	1 cut(s)	505
BveI	ACCTGC	1 cut(s)	70
Cac8I	GCNNGC	1 cut(s)	252
CfoI	GCGC	1 cut(s)	149
Cfr13I	GGNCC	2 cut(s)	317, 380
CviAII	CATG	3 cut(s)	37, 416, 550
DpnI	GATC	1 cut(s)	409
DpnII	GATC	1 cut(s)	407
DraI	TTTAAA	1 cut(s)	54
EaeI	YGGCCR	1 cut(s)	45
Eam1104I	CTCTTC	3 cut(s)	267, 397, 477
EarI	CTCTTC	3 cut(s)	267, 397, 477
Eco130I	CCWWGG	1 cut(s)	521
Eco47I	GGWCC	1 cut(s)	317
Eco57I	CTGAAG	1 cut(s)	354
EcoO109I	RGGNCCY	1 cut(s)	317
EcoT14I	CCWWGG	1 cut(s)	521
ErhI	CCWWGG	1 cut(s)	521
FaeI	CATG	3 cut(s)	40, 419, 553
FalI	AAGNNNNNCTT	2 cut(s)	376, 408
FaqI	GGGAC	1 cut(s)	330
FatI	CATG	3 cut(s)	36, 415, 549
FauNDI	CATATG	1 cut(s)	22
Fnu4HI	GCNGC	4 cut(s)	224, 261, 264, 267
FokI	GGATG	1 cut(s)	512
Fsp4HI	GCNGC	4 cut(s)	224, 261, 264, 267
FspBI	CTAG	1 cut(s)	236
GlaI	GCGC	1 cut(s)	148
GluI	GCNGC	4 cut(s)	224, 261, 264, 267
HaeII	RGCGCY	1 cut(s)	150
HaeIII	GGCC	2 cut(s)	47, 382
HhaI	GCGC	1 cut(s)	149
Hin1II	CATG	3 cut(s)	40, 419, 553
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HincII	GTYRAC	1 cut(s)	309
HindII	GTYRAC	1 cut(s)	309
HindIII	AAGCTT	1 cut(s)	8
HinfI	GANTC	3 cut(s)	310, 374, 439
HphI	GGTGA	1 cut(s)	197
Hpy166II	GTNNAC	2 cut(s)	309, 421
Hpy188I	TCNGA	3 cut(s)	355, 373, 450
Hpy188III	TCNNGA	1 cut(s)	112
Hpy8I	GTNNAC	2 cut(s)	309, 421
HpyAV	CCTTC	1 cut(s)	336
HpyCH4III	ACNGT	1 cut(s)	131
HpyCH4V	TGCA	3 cut(s)	36, 226, 254
HpyF10VI	GCNNNNNNNGC	5 cut(s)	232, 260, 266, 514, 523
Hsp92II	CATG	3 cut(s)	40, 419, 553
HspAI	GCGC	1 cut(s)	147
KflI	GGGWCCC	1 cut(s)	317
Kzo9I	GATC	1 cut(s)	407
LguI	GCTCTTC	1 cut(s)	477
LmnI	GCTCC	1 cut(s)	76
LpnPI	CCDG	9 cut(s)	65, 125, 264, 299, 363, 390, 409, 414, 482
Lsp1109I	GCAGC	4 cut(s)	210, 272, 275, 278
MaeI	CTAG	1 cut(s)	236
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	1 cut(s)	409
MboI	GATC	1 cut(s)	407
MboII	GAAGA	7 cut(s)	74, 284, 358, 384, 387, 390, 494
MfeI	CAATTG	3 cut(s)	209, 467, 488
MlsI	TGGCCA	1 cut(s)	47
MluCI	AATT	4 cut(s)	209, 214, 467, 488
MluNI	TGGCCA	1 cut(s)	47
MlyI	GAGTC	2 cut(s)	304, 433
MmeI	TCCRAC	1 cut(s)	258
MnlI	CCTC	6 cut(s)	160, 274, 444, 447, 498, 528
Mox20I	TGGCCA	1 cut(s)	47
MscI	TGGCCA	1 cut(s)	47
MseI	TTAA	2 cut(s)	15, 53
MslI	CAYNNNNRTG	1 cut(s)	41
Msp20I	TGGCCA	1 cut(s)	47
MunI	CAATTG	3 cut(s)	209, 467, 488
MwoI	GCNNNNNNNGC	5 cut(s)	232, 260, 266, 514, 523
NdeI	CATATG	1 cut(s)	22
NdeII	GATC	1 cut(s)	407
NlaIII	CATG	3 cut(s)	40, 419, 553
NlaIV	GGNNCC	2 cut(s)	318, 319
NmuCI	GTSAC	1 cut(s)	203
PciSI	GCTCTTC	1 cut(s)	477
PfeI	GAWTC	1 cut(s)	374
PkrI	GCNGC	4 cut(s)	225, 262, 265, 268
PleI	GAGTC	2 cut(s)	304, 433
PpsI	GAGTC	2 cut(s)	304, 433
PpuMI	RGGWCCY	1 cut(s)	317
Psp5II	RGGWCCY	1 cut(s)	317
PspN4I	GGNNCC	2 cut(s)	318, 319
PspPI	GGNCC	2 cut(s)	317, 380
PspPPI	RGGWCCY	1 cut(s)	317
PstI	CTGCAG	1 cut(s)	256
RseI	CAYNNNNRTG	1 cut(s)	41
SapI	GCTCTTC	1 cut(s)	477
SaqAI	TTAA	2 cut(s)	15, 53
SatI	GCNGC	4 cut(s)	224, 261, 264, 267
Sau3AI	GATC	1 cut(s)	407
Sau96I	GGNCC	2 cut(s)	317, 380
SchI	GAGTC	2 cut(s)	304, 433
SetI	ASST	8 cut(s)	12, 84, 142, 225, 237, 285, 433, 545
SfcI	CTRYAG	1 cut(s)	252
SinI	GGWCC	1 cut(s)	317
SmiMI	CAYNNNNRTG	1 cut(s)	41
Sse9I	AATT	4 cut(s)	209, 214, 467, 488
SspMI	CTAG	1 cut(s)	236
StyI	CCWWGG	1 cut(s)	521
TaaI	ACNGT	1 cut(s)	131
TasI	AATT	4 cut(s)	209, 214, 467, 488
TfiI	GAWTC	1 cut(s)	374
Tru1I	TTAA	2 cut(s)	15, 53
Tru9I	TTAA	2 cut(s)	15, 53
TseFI	GTSAC	1 cut(s)	203
TseI	GCWGC	4 cut(s)	223, 260, 263, 266
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	4 cut(s)	83, 102, 140, 204
VpaK11BI	GGWCC	1 cut(s)	317
XspI	CTAG	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.