Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0008653

Physical Location & Seq

Genomic Coordinates Reverse (-)

9985023 .. 9987583

Gene Structure 2561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g17290.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGAGAAGCTTATAAATCCATATGATAAGGAGTGCATGAGGATGGCCATTTTGAAGCATGAAGAGATATTCAAGGAGCAGGTATATGAGCTTCATAGGCTATACCACATCCAAAAATTATTGATGAACAGTTCAATAGGTAACAGCAGGCCTAAAGGAAACAAAAGAGAAAACTGGGATTTGCAGAATGAGCTGCACAGAAAGCTAGATTTAGAACAGCCTGCAGAAGCAGCTGAAGAGTTGGAGGTCATAGATGAGAGTGAGATTGAGTTGACTCTAGGACCCACAAGATACAGCAAAAACAGAAGGAAGAAATCAGAAGCACAACTAACTTCAGATTCAGGGCTAAGTTTCTCTTCTTCTTCTACTGGATCAAGCTATGTGAACAGAACAAGTTCAAGGACTCGTTACCAGAGGAGGAGTAAAGAGCAATTGGGTGGGTGTGAAGAGCAATTGAGACAGGATGAGAGGCTTAAAATGCCTCCTTGGTTTTTCCAAGTTTTGAGCTTGAACATGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

174

Amino Acids

20.37

Weight (kDa)

7.77

Isoelectric Point (pI)

66.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008653)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67390 AT5G67390 AT5G67390
fragaria_vesca	FvH4_1g17290
malus_domestica	MD02G1182600.v1.1 MD15G1293900.v1.1
prunus_persica	Prupe.6G223500_v2.0.a1 Prupe.6G223500_v2.0.a1
pyrus_communis	pycom02g14810 pycom15g25700
rosa_chinensis	RchiOBHm_Chr2g0107481
rosa_laevigata	RLG00000017582
rosa_multiflora	Rmu_sc0005152.1_g000006
rosa_roxburghii	Rroxscaffold_2G00136290
rosa_rugosa	Rorug02G0144200 Rorug02G0144300 Rorug02G0144300 Rorug02G0144400
rosa_samantha	Rh2AG194100 Rh2BG206300 Rh2CG199300 Rh2DG201300
rosa_wichuraiana	Rw2G015380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	14
Acc36I	ACCTGC	1 cut(s)	70
AclWI	GGATC	1 cut(s)	379
AcoI	YGGCCR	1 cut(s)	45
AcuI	CTGAAG	2 cut(s)	255, 318
AgsI	TTSAA	5 cut(s)	55, 73, 135, 399, 511
AluBI	AGCT	7 cut(s)	10, 91, 193, 205, 233, 378, 507
AluI	AGCT	7 cut(s)	10, 91, 193, 205, 233, 378, 507
Alw26I	GTCTC	1 cut(s)	451
AlwI	GGATC	1 cut(s)	379
AoxI	GGCC	2 cut(s)	45, 149
ApeKI	GCWGC	2 cut(s)	193, 230
Asp700I	GAANNNNTTC	1 cut(s)	394
AspS9I	GGNCC	1 cut(s)	281
AvaII	GGWCC	1 cut(s)	281
BalI	TGGCCA	1 cut(s)	47
BarI	GAAGNNNNNNTAC	2 cut(s)	75, 107
BbvI	GCAGC	2 cut(s)	180, 242
BccI	CCATC	1 cut(s)	37
BcoDI	GTCTC	1 cut(s)	451
BfaI	CTAG	2 cut(s)	206, 278
BfmI	CTRYAG	1 cut(s)	222
BfuAI	ACCTGC	1 cut(s)	70
BisI	GCNGC	2 cut(s)	194, 231
BlsI	GCNGC	2 cut(s)	195, 232
Bme18I	GGWCC	1 cut(s)	281
BmgT120I	GGNCC	1 cut(s)	281
BmiI	GGNNCC	1 cut(s)	283
BmrI	ACTGGG	1 cut(s)	184
BmuI	ACTGGG	1 cut(s)	184
BsaJI	CCNNGG	1 cut(s)	485
Bse1I	ACTGG	2 cut(s)	179, 373
BseDI	CCNNGG	1 cut(s)	485
BseGI	GGATG	3 cut(s)	48, 108, 469
BseNI	ACTGG	2 cut(s)	179, 373
BseRI	GAGGAG	2 cut(s)	430, 433
BseXI	GCAGC	2 cut(s)	180, 242
BsgI	GTGCAG	1 cut(s)	179
BshFI	GGCC	2 cut(s)	47, 151
BsmAI	GTCTC	1 cut(s)	451
BsnI	GGCC	2 cut(s)	47, 151
Bsp143I	GATC	1 cut(s)	371
BspANI	GGCC	2 cut(s)	47, 151
BspLI	GGNNCC	1 cut(s)	283
BspMAI	CTGCAG	1 cut(s)	226
BspMI	ACCTGC	1 cut(s)	70
BspPI	GGATC	1 cut(s)	379
BspQI	GCTCTTC	1 cut(s)	441
BsrI	ACTGG	2 cut(s)	179, 373
BssECI	CCNNGG	1 cut(s)	485
BssMI	GATC	1 cut(s)	371
BssT1I	CCWWGG	1 cut(s)	485
Bst4CI	ACNGT	1 cut(s)	131
Bst6I	CTCTTC	4 cut(s)	57, 231, 361, 441
BstC8I	GCNNGC	2 cut(s)	149, 222
BstDEI	CTNAG	1 cut(s)	347
BstF5I	GGATG	3 cut(s)	48, 108, 469
BstKTI	GATC	1 cut(s)	374
BstMAI	GTCTC	1 cut(s)	451
BstMBI	GATC	1 cut(s)	371
BstMWI	GCNNNNNNNGC	5 cut(s)	97, 190, 202, 230, 478
BstSFI	CTRYAG	1 cut(s)	222
BstV1I	GCAGC	2 cut(s)	180, 242
BsuRI	GGCC	2 cut(s)	47, 151
BtsCI	GGATG	3 cut(s)	48, 108, 469
BveI	ACCTGC	1 cut(s)	70
Cac8I	GCNNGC	2 cut(s)	149, 222
Cfr13I	GGNCC	1 cut(s)	281
CviAII	CATG	3 cut(s)	37, 59, 514
DdeI	CTNAG	1 cut(s)	347
DpnI	GATC	1 cut(s)	373
DpnII	GATC	1 cut(s)	371
EaeI	YGGCCR	1 cut(s)	45
Eam1104I	CTCTTC	4 cut(s)	57, 231, 361, 441
EarI	CTCTTC	4 cut(s)	57, 231, 361, 441
Eco130I	CCWWGG	1 cut(s)	485
Eco147I	AGGCCT	1 cut(s)	151
Eco47I	GGWCC	1 cut(s)	281
Eco57I	CTGAAG	2 cut(s)	255, 318
EcoO109I	RGGNCCY	1 cut(s)	281
EcoT14I	CCWWGG	1 cut(s)	485
ErhI	CCWWGG	1 cut(s)	485
FaeI	CATG	3 cut(s)	40, 62, 517
FalI	AAGNNNNNCTT	2 cut(s)	340, 372
FatI	CATG	3 cut(s)	36, 58, 513
FauNDI	CATATG	1 cut(s)	22
Fnu4HI	GCNGC	2 cut(s)	194, 231
FokI	GGATG	3 cut(s)	55, 95, 476
Fsp4HI	GCNGC	2 cut(s)	194, 231
FspBI	CTAG	2 cut(s)	206, 278
GluI	GCNGC	2 cut(s)	194, 231
HaeIII	GGCC	2 cut(s)	47, 151
Hin1II	CATG	3 cut(s)	40, 62, 517
HincII	GTYRAC	1 cut(s)	273
HindII	GTYRAC	1 cut(s)	273
HindIII	AAGCTT	1 cut(s)	8
HinfI	GANTC	3 cut(s)	274, 338, 403
Hpy166II	GTNNAC	2 cut(s)	273, 385
Hpy188I	TCNGA	2 cut(s)	319, 337
Hpy8I	GTNNAC	2 cut(s)	273, 385
HpyAV	CCTTC	1 cut(s)	300
HpyCH4III	ACNGT	1 cut(s)	131
HpyCH4V	TGCA	4 cut(s)	36, 184, 196, 224
HpyF10VI	GCNNNNNNNGC	5 cut(s)	97, 190, 202, 230, 478
HpyF3I	CTNAG	1 cut(s)	347
Hsp92II	CATG	3 cut(s)	40, 62, 517
Kzo9I	GATC	1 cut(s)	371
LguI	GCTCTTC	1 cut(s)	441
LmnI	GCTCC	1 cut(s)	76
LpnPI	CCDG	8 cut(s)	65, 133, 160, 234, 327, 354, 425, 446
Lsp1109I	GCAGC	2 cut(s)	180, 242
MaeI	CTAG	2 cut(s)	206, 278
MaeIII	GTNAC	2 cut(s)	140, 407
MalI	GATC	1 cut(s)	373
MboI	GATC	1 cut(s)	371
MboII	GAAGA	7 cut(s)	74, 248, 322, 348, 351, 354, 458
MfeI	CAATTG	2 cut(s)	431, 452
MlsI	TGGCCA	1 cut(s)	47
MluCI	AATT	3 cut(s)	116, 431, 452
MluNI	TGGCCA	1 cut(s)	47
MlyI	GAGTC	2 cut(s)	268, 397
MmeI	TCCRAC	1 cut(s)	222
MnlI	CCTC	6 cut(s)	33, 238, 408, 411, 462, 492
Mox20I	TGGCCA	1 cut(s)	47
MroXI	GAANNNNTTC	1 cut(s)	394
MscI	TGGCCA	1 cut(s)	47
MseI	TTAA	1 cut(s)	474
MslI	CAYNNNNRTG	1 cut(s)	41
Msp20I	TGGCCA	1 cut(s)	47
MspA1I	CMGCKG	1 cut(s)	233
MunI	CAATTG	2 cut(s)	431, 452
MwoI	GCNNNNNNNGC	5 cut(s)	97, 190, 202, 230, 478
NdeI	CATATG	1 cut(s)	22
NdeII	GATC	1 cut(s)	371
NlaIII	CATG	3 cut(s)	40, 62, 517
NlaIV	GGNNCC	1 cut(s)	283
PceI	AGGCCT	1 cut(s)	151
PciSI	GCTCTTC	1 cut(s)	441
PdmI	GAANNNNTTC	1 cut(s)	394
PfeI	GAWTC	1 cut(s)	338
PkrI	GCNGC	2 cut(s)	195, 232
PleI	GAGTC	2 cut(s)	268, 397
PpsI	GAGTC	2 cut(s)	268, 397
PpuMI	RGGWCCY	1 cut(s)	281
PsiI	TTATAA	1 cut(s)	14
Psp5II	RGGWCCY	1 cut(s)	281
PspN4I	GGNNCC	1 cut(s)	283
PspPI	GGNCC	1 cut(s)	281
PspPPI	RGGWCCY	1 cut(s)	281
PstI	CTGCAG	1 cut(s)	226
PvuII	CAGCTG	1 cut(s)	233
RseI	CAYNNNNRTG	1 cut(s)	41
SapI	GCTCTTC	1 cut(s)	441
SaqAI	TTAA	1 cut(s)	474
SatI	GCNGC	2 cut(s)	194, 231
Sau3AI	GATC	1 cut(s)	371
Sau96I	GGNCC	1 cut(s)	281
SchI	GAGTC	2 cut(s)	268, 397
SfcI	CTRYAG	1 cut(s)	222
SinI	GGWCC	1 cut(s)	281
SmiMI	CAYNNNNRTG	1 cut(s)	41
Sse9I	AATT	3 cut(s)	116, 431, 452
SseBI	AGGCCT	1 cut(s)	151
SspMI	CTAG	2 cut(s)	206, 278
StuI	AGGCCT	1 cut(s)	151
StyI	CCWWGG	1 cut(s)	485
TaaI	ACNGT	1 cut(s)	131
TasI	AATT	3 cut(s)	116, 431, 452
TfiI	GAWTC	1 cut(s)	338
Tru1I	TTAA	1 cut(s)	474
Tru9I	TTAA	1 cut(s)	474
TseI	GCWGC	2 cut(s)	193, 230
TspDTI	ATGAA	3 cut(s)	75, 83, 140
VpaK11BI	GGWCC	1 cut(s)	281
XmnI	GAANNNNTTC	1 cut(s)	394
XspI	CTAG	2 cut(s)	206, 278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.