Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0008653

Physical Location & Seq

Genomic Coordinates Reverse (-)

11404452 .. 11405963

Gene Structure 1512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g14810.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGCAAACAAGTTTGATTTTGGAGGCTGATTTTTTATATGGAAAGCAAAACCAAGCCATTTCTAAATTAATTCCCAGCAGTTACTATTTGCAACTGTACATCGCTGTGATGTCATCATCTGGGATTTTGGGAGGTATGGAGAAGCTTCTGAAGCCATATGATAAGGAGTATATGAGGATGGCCATCTTAAAGCATGAAGAAACTTTCAAGGAGCAGGTATATGAACTTCATAGGCTGTATCATATGCAGAACATATTGATGAAAAGCTCGGTCGGGAAAAGCAGGCCCAACGGACAGAAACAAGAGAGTTGGAATTTAAATTACCATCAGAACCAAGAGGCACAATTTAACCCACAAAGGAAACTAGATTTAGAACAGCCTGCAGCGGCAGGAGCAGAAGAGTTCATTGCAGACACAGATGGAGATGATGGGGTGCTCGAGATCATAGATGAGAGTGAGATTGAGTTGACTCTGGGCCCCACCAGATACAACAACAACAGCAGCAACGGAAGGAAGAGAGGAGGAGAGGAAGCAGCACTAACGTTATCAGATTCAGCAGGTCCAAGTAGCTTCTCATCTTCTTGTTCTACAGGATCAAGCCATGCAATAAACAGGAAAAGTAGTTTCTCCGGGAGGACCAATCAGAGTAGTACACATGGGCAGCTGCTGCCTGCTGACATGGCATCAGGTGGGTACAGAAGAGGTGGAGGGAGTAAAATCAGCAGCAGCAATGTTAATGGTGGCGAAGAACAGTTAAGACAGGATGAGAGGCTAAAACTGCCTCATTGGCTCTTCCAAGTTTTAAGCTTGAACATGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

274

Amino Acids

30.31

Weight (kDa)

6.0

Isoelectric Point (pI)

50.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008653)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67390 AT5G67390 AT5G67390
fragaria_vesca	FvH4_1g17290
malus_domestica	MD02G1182600.v1.1 MD15G1293900.v1.1
prunus_persica	Prupe.6G223500_v2.0.a1 Prupe.6G223500_v2.0.a1
pyrus_communis	pycom02g14810 pycom15g25700
rosa_chinensis	RchiOBHm_Chr2g0107481
rosa_laevigata	RLG00000017582
rosa_multiflora	Rmu_sc0005152.1_g000006
rosa_roxburghii	Rroxscaffold_2G00136290
rosa_rugosa	Rorug02G0144200 Rorug02G0144300 Rorug02G0144300 Rorug02G0144400
rosa_samantha	Rh2AG194100 Rh2BG206300 Rh2CG199300 Rh2DG201300
rosa_wichuraiana	Rw2G015380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	205, 548
AciI	CCGC	1 cut(s)	386
AclI	AACGTT	1 cut(s)	542
AclWI	GGATC	1 cut(s)	601
AcoI	YGGCCR	1 cut(s)	180
AcsI	RAATTY	1 cut(s)	313
AcuI	CTGAAG	1 cut(s)	170
AfaI	GTAC	3 cut(s)	98, 652, 695
AgsI	TTSAA	2 cut(s)	208, 811
AluBI	AGCT	5 cut(s)	145, 267, 570, 664, 807
AluI	AGCT	5 cut(s)	145, 267, 570, 664, 807
Alw21I	GWGCWC	1 cut(s)	438
AlwI	GGATC	1 cut(s)	601
AlwNI	CAGNNNCTG	1 cut(s)	667
Ama87I	CYCGRG	1 cut(s)	437
AoxI	GGCC	3 cut(s)	180, 284, 475
ApaI	GGGCCC	1 cut(s)	479
ApeKI	GCWGC	8 cut(s)	383, 501, 533, 661, 664, 667, 723, 726
ApoI	RAATTY	1 cut(s)	313
AseI	ATTAAT	1 cut(s)	68
AspS9I	GGNCC	5 cut(s)	285, 475, 476, 560, 636
AsuC2I	CCSGG	1 cut(s)	631
AvaI	CYCGRG	1 cut(s)	437
AvaII	GGWCC	2 cut(s)	560, 636
BaeGI	GKGCMC	1 cut(s)	479
BalI	TGGCCA	1 cut(s)	182
BanII	GRGCYC	1 cut(s)	479
BarI	GAAGNNNNNNTAC	2 cut(s)	210, 242
Bbv12I	GWGCWC	1 cut(s)	438
BbvI	GCAGC	8 cut(s)	395, 513, 545, 651, 654, 673, 735, 738
BccI	CCATC	5 cut(s)	172, 191, 333, 413, 422
BcnI	CCSGG	1 cut(s)	631
BfaI	CTAG	1 cut(s)	365
BfmI	CTRYAG	2 cut(s)	381, 588
BfuAI	ACCTGC	2 cut(s)	205, 548
BglI	GCCNNNNNGGC	1 cut(s)	787
BisI	GCNGC	9 cut(s)	384, 387, 502, 534, 662, 665, 668, 724, 727
BlsI	GCNGC	9 cut(s)	385, 388, 503, 535, 663, 666, 669, 725, 728
Bme1390I	CCNGG	1 cut(s)	631
Bme18I	GGWCC	2 cut(s)	560, 636
BmeT110I	CYCGRG	1 cut(s)	437
BmgT120I	GGNCC	5 cut(s)	285, 475, 476, 560, 636
BmiI	GGNNCC	2 cut(s)	477, 478
BmrFI	CCNGG	1 cut(s)	631
BmsI	GCATC	1 cut(s)	692
BpuMI	CCSGG	1 cut(s)	631
BsaBI	GATNNNNATC	1 cut(s)	182
Bse3DI	GCAATG	2 cut(s)	405, 736
Bse8I	GATNNNNATC	1 cut(s)	182
BseGI	GGATG	2 cut(s)	183, 769
BseJI	GATNNNNATC	1 cut(s)	182
BseMI	GCAATG	2 cut(s)	405, 736
BseRI	GAGGAG	2 cut(s)	534, 537
BseSI	GKGCMC	1 cut(s)	479
BseXI	GCAGC	8 cut(s)	395, 513, 545, 651, 654, 673, 735, 738
BseYI	CCCAGC	1 cut(s)	74
Bsh1285I	CGRYCG	1 cut(s)	273
BshFI	GGCC	3 cut(s)	182, 286, 477
BsiEI	CGRYCG	1 cut(s)	273
BsiHKAI	GWGCWC	1 cut(s)	438
BsiHKCI	CYCGRG	1 cut(s)	437
BsiSI	CCGG	1 cut(s)	630
BsnI	GGCC	3 cut(s)	182, 286, 477
BsoBI	CYCGRG	1 cut(s)	437
Bsp120I	GGGCCC	1 cut(s)	475
Bsp1286I	GDGCHC	2 cut(s)	438, 479
Bsp1407I	TGTACA	1 cut(s)	96
Bsp143I	GATC	2 cut(s)	441, 593
BspACI	CCGC	1 cut(s)	386
BspANI	GGCC	3 cut(s)	182, 286, 477
BspLI	GGNNCC	2 cut(s)	477, 478
BspMAI	CTGCAG	1 cut(s)	385
BspMI	ACCTGC	2 cut(s)	205, 548
BspPI	GGATC	1 cut(s)	601
BspQI	GCTCTTC	1 cut(s)	797
BsrDI	GCAATG	2 cut(s)	405, 736
BsrGI	TGTACA	1 cut(s)	96
BssMI	GATC	2 cut(s)	441, 593
Bst4CI	ACNGT	2 cut(s)	96, 753
Bst6I	CTCTTC	4 cut(s)	393, 509, 694, 797
BstAPI	GCANNNNNTGC	1 cut(s)	667
BstAUI	TGTACA	1 cut(s)	96
BstC8I	GCNNGC	3 cut(s)	284, 381, 672
BstF5I	GGATG	2 cut(s)	183, 769
BstKTI	GATC	2 cut(s)	444, 596
BstMBI	GATC	2 cut(s)	441, 593
BstMCI	CGRYCG	1 cut(s)	273
BstMWI	GCNNNNNNNGC	6 cut(s)	151, 392, 667, 680, 778, 787
BstSCI	CCNGG	1 cut(s)	629
BstSFI	CTRYAG	2 cut(s)	381, 588
BstSLI	GKGCMC	1 cut(s)	479
BstV1I	GCAGC	8 cut(s)	395, 513, 545, 651, 654, 673, 735, 738
BsuRI	GGCC	3 cut(s)	182, 286, 477
BtgZI	GCGATG	1 cut(s)	85
BtsCI	GGATG	2 cut(s)	183, 769
BveI	ACCTGC	2 cut(s)	205, 548
Cac8I	GCNNGC	3 cut(s)	284, 381, 672
CaiI	CAGNNNCTG	1 cut(s)	667
Cfr13I	GGNCC	5 cut(s)	285, 475, 476, 560, 636
Csp6I	GTAC	3 cut(s)	97, 651, 694
CviAII	CATG	5 cut(s)	194, 602, 656, 679, 814
CviQI	GTAC	3 cut(s)	97, 651, 694
DpnI	GATC	2 cut(s)	443, 595
DpnII	GATC	2 cut(s)	441, 593
DraI	TTTAAA	1 cut(s)	318
EaeI	YGGCCR	1 cut(s)	180
Eam1104I	CTCTTC	4 cut(s)	393, 509, 694, 797
EarI	CTCTTC	4 cut(s)	393, 509, 694, 797
Eco24I	GRGCYC	1 cut(s)	479
Eco47I	GGWCC	2 cut(s)	560, 636
Eco57I	CTGAAG	1 cut(s)	170
Eco88I	CYCGRG	1 cut(s)	437
EcoO109I	RGGNCCY	1 cut(s)	476
EcoT38I	GRGCYC	1 cut(s)	479
FaeI	CATG	5 cut(s)	197, 605, 659, 682, 817
FatI	CATG	5 cut(s)	193, 601, 655, 678, 813
FauNDI	CATATG	2 cut(s)	157, 243
Fnu4HI	GCNGC	9 cut(s)	384, 387, 502, 534, 662, 665, 668, 724, 727
FokI	GGATG	2 cut(s)	190, 776
FriOI	GRGCYC	1 cut(s)	479
Fsp4HI	GCNGC	9 cut(s)	384, 387, 502, 534, 662, 665, 668, 724, 727
FspBI	CTAG	1 cut(s)	365
GluI	GCNGC	9 cut(s)	384, 387, 502, 534, 662, 665, 668, 724, 727
GsaI	CCCAGC	1 cut(s)	78
HaeIII	GGCC	3 cut(s)	182, 286, 477
HapII	CCGG	1 cut(s)	630
Hin1II	CATG	5 cut(s)	197, 605, 659, 682, 817
HincII	GTYRAC	1 cut(s)	468
HindII	GTYRAC	1 cut(s)	468
HindIII	AAGCTT	2 cut(s)	143, 805
HinfI	GANTC	2 cut(s)	469, 551
HpaII	CCGG	1 cut(s)	630
Hpy166II	GTNNAC	2 cut(s)	468, 653
Hpy188I	TCNGA	4 cut(s)	150, 330, 550, 645
Hpy188III	TCNNGA	2 cut(s)	274, 439
Hpy8I	GTNNAC	2 cut(s)	468, 653
HpyAV	CCTTC	1 cut(s)	504
HpyCH4III	ACNGT	2 cut(s)	96, 753
HpyCH4IV	ACGT	1 cut(s)	542
HpyCH4V	TGCA	6 cut(s)	4, 91, 247, 383, 410, 605
HpyF10VI	GCNNNNNNNGC	6 cut(s)	151, 392, 667, 680, 778, 787
HpySE526I	ACGT	1 cut(s)	542
Hsp92II	CATG	5 cut(s)	197, 605, 659, 682, 817
Kzo9I	GATC	2 cut(s)	441, 593
LguI	GCTCTTC	1 cut(s)	797
LmnI	GCTCC	2 cut(s)	211, 392
Lsp1109I	GCAGC	8 cut(s)	395, 513, 545, 651, 654, 673, 735, 738
LweI	GCATC	1 cut(s)	692
MaeI	CTAG	1 cut(s)	365
MaeII	ACGT	1 cut(s)	542
MaeIII	GTNAC	1 cut(s)	80
MalI	GATC	2 cut(s)	443, 595
MboI	GATC	2 cut(s)	441, 593
MboII	GAAGA	7 cut(s)	209, 410, 526, 570, 711, 758, 784
MhlI	GDGCHC	2 cut(s)	438, 479
MlsI	TGGCCA	1 cut(s)	182
MluCI	AATT	5 cut(s)	65, 69, 313, 319, 344
MluNI	TGGCCA	1 cut(s)	182
MlyI	GAGTC	1 cut(s)	463
MmeI	TCCRAC	1 cut(s)	290
Mox20I	TGGCCA	1 cut(s)	182
MscI	TGGCCA	1 cut(s)	182
MseI	TTAA	7 cut(s)	68, 188, 317, 348, 735, 755, 803
MslI	CAYNNNNRTG	2 cut(s)	104, 257
Msp20I	TGGCCA	1 cut(s)	182
MspA1I	CMGCKG	2 cut(s)	386, 664
MspI	CCGG	1 cut(s)	630
MspR9I	CCNGG	1 cut(s)	631
MwoI	GCNNNNNNNGC	6 cut(s)	151, 392, 667, 680, 778, 787
NciI	CCSGG	1 cut(s)	631
NdeI	CATATG	2 cut(s)	157, 243
NdeII	GATC	2 cut(s)	441, 593
NlaIII	CATG	5 cut(s)	197, 605, 659, 682, 817
NlaIV	GGNNCC	2 cut(s)	477, 478
PaeR7I	CTCGAG	1 cut(s)	437
PciSI	GCTCTTC	1 cut(s)	797
PfeI	GAWTC	1 cut(s)	551
PfoI	TCCNGGA	1 cut(s)	629
PkrI	GCNGC	9 cut(s)	385, 388, 503, 535, 663, 666, 669, 725, 728
PleI	GAGTC	1 cut(s)	463
PpsI	GAGTC	1 cut(s)	463
PshBI	ATTAAT	1 cut(s)	68
Psp1406I	AACGTT	1 cut(s)	542
PspFI	CCCAGC	1 cut(s)	74
PspN4I	GGNNCC	2 cut(s)	477, 478
PspOMI	GGGCCC	1 cut(s)	475
PspPI	GGNCC	5 cut(s)	285, 475, 476, 560, 636
PstI	CTGCAG	1 cut(s)	385
PstNI	CAGNNNCTG	1 cut(s)	667
PvuII	CAGCTG	1 cut(s)	664
RsaI	GTAC	3 cut(s)	98, 652, 695
RsaNI	GTAC	3 cut(s)	97, 651, 694
RseI	CAYNNNNRTG	2 cut(s)	104, 257
SapI	GCTCTTC	1 cut(s)	797
SaqAI	TTAA	7 cut(s)	68, 188, 317, 348, 735, 755, 803
SatI	GCNGC	9 cut(s)	384, 387, 502, 534, 662, 665, 668, 724, 727
Sau3AI	GATC	2 cut(s)	441, 593
Sau96I	GGNCC	5 cut(s)	285, 475, 476, 560, 636
SchI	GAGTC	1 cut(s)	463
ScrFI	CCNGG	1 cut(s)	631
SduI	GDGCHC	2 cut(s)	438, 479
SfaNI	GCATC	1 cut(s)	692
SfcI	CTRYAG	2 cut(s)	381, 588
Sfr274I	CTCGAG	1 cut(s)	437
SinI	GGWCC	2 cut(s)	560, 636
SlaI	CTCGAG	1 cut(s)	437
SmiI	ATTTAAAT	1 cut(s)	318
SmiMI	CAYNNNNRTG	2 cut(s)	104, 257
SmlI	CTYRAG	1 cut(s)	437
SmoI	CTYRAG	1 cut(s)	437
Sse9I	AATT	5 cut(s)	65, 69, 313, 319, 344
SsiI	CCGC	1 cut(s)	386
SspMI	CTAG	1 cut(s)	365
StyD4I	CCNGG	1 cut(s)	629
SwaI	ATTTAAAT	1 cut(s)	318
TaaI	ACNGT	2 cut(s)	96, 753
TaiI	ACGT	1 cut(s)	545
TaqI	TCGA	1 cut(s)	438
TaqII	GACCGA	1 cut(s)	259
TasI	AATT	5 cut(s)	65, 69, 313, 319, 344
TatI	WGTACW	2 cut(s)	96, 650
TauI	GCSGC	1 cut(s)	389
TfiI	GAWTC	1 cut(s)	551
Tru1I	TTAA	7 cut(s)	68, 188, 317, 348, 735, 755, 803
Tru9I	TTAA	7 cut(s)	68, 188, 317, 348, 735, 755, 803
TseI	GCWGC	8 cut(s)	383, 501, 533, 661, 664, 667, 723, 726
TspDTI	ATGAA	5 cut(s)	210, 218, 237, 275, 394
TspGWI	ACGGA	2 cut(s)	306, 522
VpaK11BI	GGWCC	2 cut(s)	560, 636
VspI	ATTAAT	1 cut(s)	68
XapI	RAATTY	1 cut(s)	313
XhoI	CTCGAG	1 cut(s)	437
XspI	CTAG	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.