Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0008653

Physical Location & Seq

Genomic Coordinates Reverse (-)

16471688 .. 16473842

Gene Structure 2155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1182600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGAGAAGCTTCTGAAGCCATATGATAAGGAGTATATGAGGATGGCCATCCTAAAGCATGAAGAAACTTTCAAGGAGCAGGTCTATGAACTTCATAGGCTGTATCATATGCAGAACATATTGATGAAAAGCTCCATCGGGAAAGGCAGGCCCAATGGACAGAAACAAGAGAGTTGGAATTTAAATTATCATCAGAACCAAGAGGCACAATTTAACCCACAAAGGAAACTAGATTTAGAACAGCCTGCAGCAGCAGGAGCAGAAGAGTTCATTGCAGACACAGATGGAGATGATGGGGTGCTCGAGATCATAGATGAGAGTGAGATTGAGTTGACTCTGGGCCCCACCAGATACAACAACAACAACAGCAACAGAAGCAGCAGCAGCAACGGAAGGAAGAGAGGAGGAGAGGCAGCAGCCCTAACGTTATCAGATTCAGCAGGTCCAAGTAGCTTCTCATCTTCTTGTTCTACTGGATCAAGCCATGCAATAAACAGGCAAAGTAGTTTCTCCAGGAGGAACAATCAGAGTAGTACACATGGGCAGCTGCTGCCTGCTGACATGGCCTCAGGAGGGTACAGAAGAGGTGGAGGTAGTAAAATCAGCGGCAGCAATGTTAATGGTGGCGAAGAACAGTTAAGACAGGATGAGAGGCTAAAACTGCCTCATTGGCTCTTCCAAGTTTTAAGCTTGAACATGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

235

Amino Acids

26.07

Weight (kDa)

6.39

Isoelectric Point (pI)

56.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008653)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67390 AT5G67390 AT5G67390
fragaria_vesca	FvH4_1g17290
malus_domestica	MD02G1182600.v1.1 MD15G1293900.v1.1
prunus_persica	Prupe.6G223500_v2.0.a1 Prupe.6G223500_v2.0.a1
pyrus_communis	pycom02g14810 pycom15g25700
rosa_chinensis	RchiOBHm_Chr2g0107481
rosa_laevigata	RLG00000017582
rosa_multiflora	Rmu_sc0005152.1_g000006
rosa_roxburghii	Rroxscaffold_2G00136290
rosa_rugosa	Rorug02G0144200 Rorug02G0144300 Rorug02G0144300 Rorug02G0144400
rosa_samantha	Rh2AG194100 Rh2BG206300 Rh2CG199300 Rh2DG201300
rosa_wichuraiana	Rw2G015380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	70, 431
AciI	CCGC	1 cut(s)	606
AclI	AACGTT	1 cut(s)	425
AclWI	GGATC	1 cut(s)	484
AcoI	YGGCCR	1 cut(s)	45
AcsI	RAATTY	1 cut(s)	178
AcuI	CTGAAG	1 cut(s)	35
AfaI	GTAC	2 cut(s)	535, 578
AfiI	CCNNNNNNNGG	1 cut(s)	573
AgsI	TTSAA	2 cut(s)	73, 694
AjnI	CCWGG	1 cut(s)	512
AluBI	AGCT	5 cut(s)	10, 132, 453, 547, 690
AluI	AGCT	5 cut(s)	10, 132, 453, 547, 690
Alw21I	GWGCWC	1 cut(s)	303
AlwI	GGATC	1 cut(s)	484
AlwNI	CAGNNNCTG	1 cut(s)	550
Ama87I	CYCGRG	1 cut(s)	302
AoxI	GGCC	4 cut(s)	45, 149, 340, 564
ApaI	GGGCCC	1 cut(s)	344
ApoI	RAATTY	1 cut(s)	178
AspS9I	GGNCC	4 cut(s)	150, 340, 341, 443
AvaI	CYCGRG	1 cut(s)	302
AvaII	GGWCC	1 cut(s)	443
AxyI	CCTNAGG	1 cut(s)	568
BaeGI	GKGCMC	1 cut(s)	344
BalI	TGGCCA	1 cut(s)	47
BanII	GRGCYC	1 cut(s)	344
Bbv12I	GWGCWC	1 cut(s)	303
BccI	CCATC	5 cut(s)	37, 56, 143, 278, 287
BciT130I	CCWGG	1 cut(s)	514
BfaI	CTAG	1 cut(s)	230
BfmI	CTRYAG	1 cut(s)	246
BfuAI	ACCTGC	2 cut(s)	70, 431
BglI	GCCNNNNNGGC	1 cut(s)	670
Bme1390I	CCNGG	1 cut(s)	514
Bme18I	GGWCC	1 cut(s)	443
BmeT110I	CYCGRG	1 cut(s)	302
BmgT120I	GGNCC	4 cut(s)	150, 340, 341, 443
BmiI	GGNNCC	2 cut(s)	342, 343
BmrFI	CCNGG	1 cut(s)	514
BpmI	CTGGAG	1 cut(s)	496
BsaBI	GATNNNNATC	1 cut(s)	47
Bsc4I	CCNNNNNNNGG	1 cut(s)	573
Bse1I	ACTGG	1 cut(s)	478
Bse21I	CCTNAGG	1 cut(s)	568
Bse3DI	GCAATG	2 cut(s)	270, 619
Bse8I	GATNNNNATC	1 cut(s)	47
BseBI	CCWGG	1 cut(s)	514
BseGI	GGATG	3 cut(s)	48, 48, 652
BseJI	GATNNNNATC	1 cut(s)	47
BseLI	CCNNNNNNNGG	1 cut(s)	573
BseMI	GCAATG	2 cut(s)	270, 619
BseMII	CTCAG	1 cut(s)	582
BseNI	ACTGG	1 cut(s)	478
BseRI	GAGGAG	2 cut(s)	417, 420
BseSI	GKGCMC	1 cut(s)	344
BshFI	GGCC	4 cut(s)	47, 151, 342, 566
BsiHKAI	GWGCWC	1 cut(s)	303
BsiHKCI	CYCGRG	1 cut(s)	302
BslI	CCNNNNNNNGG	1 cut(s)	573
BsnI	GGCC	4 cut(s)	47, 151, 342, 566
BsoBI	CYCGRG	1 cut(s)	302
Bsp120I	GGGCCC	1 cut(s)	340
Bsp1286I	GDGCHC	2 cut(s)	303, 344
Bsp143I	GATC	2 cut(s)	306, 476
BspACI	CCGC	1 cut(s)	606
BspANI	GGCC	4 cut(s)	47, 151, 342, 566
BspCNI	CTCAG	1 cut(s)	581
BspLI	GGNNCC	2 cut(s)	342, 343
BspMAI	CTGCAG	1 cut(s)	250
BspMI	ACCTGC	2 cut(s)	70, 431
BspPI	GGATC	1 cut(s)	484
BspQI	GCTCTTC	1 cut(s)	680
BsrDI	GCAATG	2 cut(s)	270, 619
BsrI	ACTGG	1 cut(s)	478
BssMI	GATC	2 cut(s)	306, 476
Bst2UI	CCWGG	1 cut(s)	514
Bst4CI	ACNGT	1 cut(s)	636
Bst6I	CTCTTC	4 cut(s)	258, 392, 577, 680
BstAPI	GCANNNNNTGC	1 cut(s)	550
BstC8I	GCNNGC	3 cut(s)	149, 246, 555
BstDEI	CTNAG	1 cut(s)	568
BstF5I	GGATG	3 cut(s)	48, 48, 652
BstKTI	GATC	2 cut(s)	309, 479
BstMBI	GATC	2 cut(s)	306, 476
BstMWI	GCNNNNNNNGC	8 cut(s)	16, 257, 375, 384, 550, 563, 661, 670
BstNI	CCWGG	1 cut(s)	514
BstSCI	CCNGG	1 cut(s)	512
BstSFI	CTRYAG	1 cut(s)	246
BstSLI	GKGCMC	1 cut(s)	344
Bsu36I	CCTNAGG	1 cut(s)	568
BsuRI	GGCC	4 cut(s)	47, 151, 342, 566
BtsCI	GGATG	3 cut(s)	48, 48, 652
BveI	ACCTGC	2 cut(s)	70, 431
Cac8I	GCNNGC	3 cut(s)	149, 246, 555
CaiI	CAGNNNCTG	1 cut(s)	550
Cfr13I	GGNCC	4 cut(s)	150, 340, 341, 443
Csp6I	GTAC	2 cut(s)	534, 577
CviAII	CATG	5 cut(s)	59, 485, 539, 562, 697
CviQI	GTAC	2 cut(s)	534, 577
DdeI	CTNAG	1 cut(s)	568
DpnI	GATC	2 cut(s)	308, 478
DpnII	GATC	2 cut(s)	306, 476
DraI	TTTAAA	1 cut(s)	183
EaeI	YGGCCR	1 cut(s)	45
Eam1104I	CTCTTC	4 cut(s)	258, 392, 577, 680
EarI	CTCTTC	4 cut(s)	258, 392, 577, 680
Eco24I	GRGCYC	1 cut(s)	344
Eco47I	GGWCC	1 cut(s)	443
Eco57I	CTGAAG	1 cut(s)	35
Eco81I	CCTNAGG	1 cut(s)	568
Eco88I	CYCGRG	1 cut(s)	302
EcoO109I	RGGNCCY	1 cut(s)	341
EcoRII	CCWGG	1 cut(s)	512
EcoT38I	GRGCYC	1 cut(s)	344
FaeI	CATG	5 cut(s)	62, 488, 542, 565, 700
FatI	CATG	5 cut(s)	58, 484, 538, 561, 696
FauNDI	CATATG	2 cut(s)	22, 108
FokI	GGATG	3 cut(s)	35, 55, 659
FriOI	GRGCYC	1 cut(s)	344
FspBI	CTAG	1 cut(s)	230
GsuI	CTGGAG	1 cut(s)	496
HaeIII	GGCC	4 cut(s)	47, 151, 342, 566
Hin1II	CATG	5 cut(s)	62, 488, 542, 565, 700
HincII	GTYRAC	1 cut(s)	333
HindII	GTYRAC	1 cut(s)	333
HindIII	AAGCTT	2 cut(s)	8, 688
HinfI	GANTC	2 cut(s)	334, 434
Hpy166II	GTNNAC	2 cut(s)	333, 536
Hpy188I	TCNGA	4 cut(s)	15, 195, 433, 528
Hpy188III	TCNNGA	3 cut(s)	139, 304, 570
Hpy8I	GTNNAC	2 cut(s)	333, 536
HpyAV	CCTTC	1 cut(s)	387
HpyCH4III	ACNGT	1 cut(s)	636
HpyCH4IV	ACGT	1 cut(s)	425
HpyCH4V	TGCA	4 cut(s)	112, 248, 275, 488
HpyF10VI	GCNNNNNNNGC	8 cut(s)	16, 257, 375, 384, 550, 563, 661, 670
HpyF3I	CTNAG	1 cut(s)	568
HpySE526I	ACGT	1 cut(s)	425
Hsp92II	CATG	5 cut(s)	62, 488, 542, 565, 700
Kzo9I	GATC	2 cut(s)	306, 476
LguI	GCTCTTC	1 cut(s)	680
LmnI	GCTCC	3 cut(s)	76, 137, 257
MaeI	CTAG	1 cut(s)	230
MaeII	ACGT	1 cut(s)	425
MalI	GATC	2 cut(s)	308, 478
MboI	GATC	2 cut(s)	306, 476
MboII	GAAGA	7 cut(s)	74, 275, 409, 453, 594, 641, 667
MhlI	GDGCHC	2 cut(s)	303, 344
MlsI	TGGCCA	1 cut(s)	47
MluCI	AATT	3 cut(s)	178, 184, 209
MluNI	TGGCCA	1 cut(s)	47
MlyI	GAGTC	1 cut(s)	328
MmeI	TCCRAC	1 cut(s)	155
Mox20I	TGGCCA	1 cut(s)	47
MscI	TGGCCA	1 cut(s)	47
MseI	TTAA	5 cut(s)	182, 213, 618, 638, 686
MslI	CAYNNNNRTG	1 cut(s)	122
Msp20I	TGGCCA	1 cut(s)	47
MspA1I	CMGCKG	2 cut(s)	547, 606
MspR9I	CCNGG	1 cut(s)	514
MvaI	CCWGG	1 cut(s)	514
MwoI	GCNNNNNNNGC	8 cut(s)	16, 257, 375, 384, 550, 563, 661, 670
NdeI	CATATG	2 cut(s)	22, 108
NdeII	GATC	2 cut(s)	306, 476
NlaIII	CATG	5 cut(s)	62, 488, 542, 565, 700
NlaIV	GGNNCC	2 cut(s)	342, 343
PaeR7I	CTCGAG	1 cut(s)	302
PciSI	GCTCTTC	1 cut(s)	680
PfeI	GAWTC	1 cut(s)	434
PfoI	TCCNGGA	1 cut(s)	512
PleI	GAGTC	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	328
Psp1406I	AACGTT	1 cut(s)	425
Psp6I	CCWGG	1 cut(s)	512
PspGI	CCWGG	1 cut(s)	512
PspN4I	GGNNCC	2 cut(s)	342, 343
PspOMI	GGGCCC	1 cut(s)	340
PspPI	GGNCC	4 cut(s)	150, 340, 341, 443
PstI	CTGCAG	1 cut(s)	250
PstNI	CAGNNNCTG	1 cut(s)	550
PvuII	CAGCTG	1 cut(s)	547
RsaI	GTAC	2 cut(s)	535, 578
RsaNI	GTAC	2 cut(s)	534, 577
RseI	CAYNNNNRTG	1 cut(s)	122
SapI	GCTCTTC	1 cut(s)	680
SaqAI	TTAA	5 cut(s)	182, 213, 618, 638, 686
Sau3AI	GATC	2 cut(s)	306, 476
Sau96I	GGNCC	4 cut(s)	150, 340, 341, 443
SchI	GAGTC	1 cut(s)	328
ScrFI	CCNGG	1 cut(s)	514
SduI	GDGCHC	2 cut(s)	303, 344
SfcI	CTRYAG	1 cut(s)	246
Sfr274I	CTCGAG	1 cut(s)	302
SinI	GGWCC	1 cut(s)	443
SlaI	CTCGAG	1 cut(s)	302
SmiI	ATTTAAAT	1 cut(s)	183
SmiMI	CAYNNNNRTG	1 cut(s)	122
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
Sse9I	AATT	3 cut(s)	178, 184, 209
SsiI	CCGC	1 cut(s)	606
SspMI	CTAG	1 cut(s)	230
StyD4I	CCNGG	1 cut(s)	512
SwaI	ATTTAAAT	1 cut(s)	183
TaaI	ACNGT	1 cut(s)	636
TaiI	ACGT	1 cut(s)	428
TaqI	TCGA	1 cut(s)	303
TasI	AATT	3 cut(s)	178, 184, 209
TatI	WGTACW	1 cut(s)	533
TauI	GCSGC	1 cut(s)	609
TfiI	GAWTC	1 cut(s)	434
Tru1I	TTAA	5 cut(s)	182, 213, 618, 638, 686
Tru9I	TTAA	5 cut(s)	182, 213, 618, 638, 686
TspDTI	ATGAA	5 cut(s)	75, 83, 102, 140, 259
TspGWI	ACGGA	1 cut(s)	405
VpaK11BI	GGWCC	1 cut(s)	443
XapI	RAATTY	1 cut(s)	178
XhoI	CTCGAG	1 cut(s)	302
XspI	CTAG	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.