AT5G67640

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012157
Physical Location & Seq
Reverse (-)
26969516 .. 26970668
1153 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G67640.1

Sequence Viewer

Length: 606 bp
ATGCGACGGCGAGAAGAAAAGCGTCGAGAATTTCACGAAGCTCTTCTTCAAACACTGTATCCTCCTTCATCGCCACCTTCTTCTCCTTCCTATTCTCCGCCTCCGGTGGAGGTTGTTGATAACGAACCATTCGATGTGTCACTCATAAACCCAGAGGATTACTTGAAAATCGATTCATCTAATCACGGAGAAGACAAAGAAATCGGAGACGAATTGGGGATTGCAGAGAAACAGAGTCGAGCGCAGAGAAAGAGGTTAAGGAAGAAGATGCTCAAAGAGGAAGCAGCTCGACGGAAGAAAGTCATCGGACCTTTACTTCCGACTGAAATGCTTCAGACCCATGATGAAAGAAGTGTCGGAGATGCTTGTGGGAGCAATGTTGAAGAAGAAGATTCTGACGGTGGCGAAGAAGAGGTTGATGGGAGCATTAGCAACATATGCTCACAACTTGTTCGACCAAATGCCCAAGAGAAGAAAGAAGGACTAATCGGTGACAATGATAAGACGAGAAAAGTCAAGAAGAGAAGAAATGCTAAGAAACTGGCCAAAGAGAGTTCTAAGAATATCCAGGATGGATCCAATGCAATCCCTGAAATTCCTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

22.6

Weight (kDa)

5.81

Isoelectric Point (pI)

87.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012157)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G67640
fragaria_vesca FvH4_1g17950
malus_domestica MD15G1299000.v1.1
prunus_persica Prupe.6G218900_v2.0.a1
pyrus_communis pycom15g26160
rosa_chinensis RchiOBHm_Chr2g0108411
rosa_laevigata RLG00000017666
rosa_multiflora Rmu_sc0002372.1_g000022 Rmu_sc0009208.1_g000006
rosa_roxburghii Rroxscaffold_2G00135180 Rroxscaffold_2G00135380
rosa_rugosa Rorug02G0152400 Rorug02G0152500
rosa_samantha Rh2AG201600 Rh2BG214500 Rh2CG205800 Rh2DG208900
rosa_wichuraiana Rw2G016040 Rw2G016100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 98
AclWI GGATC 2 cut(s) 570, 583
AcoI YGGCCR 1 cut(s) 543
AcsI RAATTY 2 cut(s) 29, 594
AcuI CTGAAG 1 cut(s) 317
AgsI TTSAA 3 cut(s) 50, 166, 383
AjnI CCWGG 1 cut(s) 567
AluBI AGCT 2 cut(s) 41, 287
AluI AGCT 2 cut(s) 41, 287
Alw26I GTCTC 1 cut(s) 201
AlwI GGATC 2 cut(s) 570, 583
AoxI GGCC 1 cut(s) 543
ApeKI GCWGC 1 cut(s) 284
ApoI RAATTY 2 cut(s) 29, 594
Asp700I GAANNNNTTC 2 cut(s) 42, 330
AspLEI GCGC 1 cut(s) 244
AspS9I GGNCC 1 cut(s) 308
AsuHPI GGTGA 1 cut(s) 503
AvaII GGWCC 1 cut(s) 308
BalI TGGCCA 1 cut(s) 545
BamHI GGATCC 1 cut(s) 575
BbsI GAAGAC 1 cut(s) 198
BbvI GCAGC 1 cut(s) 296
BccI CCATC 2 cut(s) 413, 566
BceAI ACGGC 1 cut(s) 23
BcgI CGANNNNNNTGC 2 cut(s) 310, 344
BciT130I CCWGG 1 cut(s) 569
BciVI GTATCC 1 cut(s) 69
BcoDI GTCTC 1 cut(s) 201
BfuI GTATCC 1 cut(s) 69
BisI GCNGC 1 cut(s) 285
BlsI GCNGC 1 cut(s) 286
Bme1390I CCNGG 1 cut(s) 569
Bme18I GGWCC 1 cut(s) 308
BmgT120I GGNCC 1 cut(s) 308
BmiI GGNNCC 1 cut(s) 577
BmrFI CCNGG 1 cut(s) 569
BmsI GCATC 2 cut(s) 258, 352
BpiI GAAGAC 1 cut(s) 198
Bsa29I ATCGAT 1 cut(s) 171
BsaWI WCCGGW 1 cut(s) 103
Bse1I ACTGG 1 cut(s) 546
Bse3DI GCAATG 1 cut(s) 382
BseBI CCWGG 1 cut(s) 569
BseCI ATCGAT 1 cut(s) 171
BseGI GGATG 1 cut(s) 577
BseMI GCAATG 1 cut(s) 382
BseNI ACTGG 1 cut(s) 546
BseXI GCAGC 1 cut(s) 296
BshFI GGCC 1 cut(s) 545
BshVI ATCGAT 1 cut(s) 171
BsiSI CCGG 1 cut(s) 104
BsmAI GTCTC 1 cut(s) 201
BsmBI CGTCTC 1 cut(s) 201
BsnI GGCC 1 cut(s) 545
Bsp143I GATC 1 cut(s) 575
BspACI CCGC 1 cut(s) 98
BspANI GGCC 1 cut(s) 545
BspDI ATCGAT 1 cut(s) 171
BspLI GGNNCC 1 cut(s) 577
BspPI GGATC 2 cut(s) 570, 583
BspQI GCTCTTC 1 cut(s) 48
BsrDI GCAATG 1 cut(s) 382
BsrI ACTGG 1 cut(s) 546
BssMI GATC 1 cut(s) 575
Bst2UI CCWGG 1 cut(s) 569
Bst4CI ACNGT 2 cut(s) 57, 401
Bst6I CTCTTC 3 cut(s) 48, 405, 515
BstAPI GCANNNNNTGC 1 cut(s) 438
BstDEI CTNAG 2 cut(s) 534, 558
BstF5I GGATG 1 cut(s) 577
BstHHI GCGC 1 cut(s) 244
BstKTI GATC 1 cut(s) 578
BstMAI GTCTC 1 cut(s) 201
BstMBI GATC 1 cut(s) 575
BstMWI GCNNNNNNNGC 1 cut(s) 438
BstNI CCWGG 1 cut(s) 569
BstSCI CCNGG 1 cut(s) 567
BstV1I GCAGC 1 cut(s) 296
BstV2I GAAGAC 1 cut(s) 198
BstX2I RGATCY 1 cut(s) 575
BstYI RGATCY 1 cut(s) 575
Bsu15I ATCGAT 1 cut(s) 171
BsuI GTATCC 1 cut(s) 69
BsuRI GGCC 1 cut(s) 545
BsuTUI ATCGAT 1 cut(s) 171
BtgZI GCGATG 1 cut(s) 54
BtsCI GGATG 1 cut(s) 577
BtsIMutI CAGTG 1 cut(s) 53
CfoI GCGC 1 cut(s) 244
Cfr13I GGNCC 1 cut(s) 308
ClaI ATCGAT 1 cut(s) 171
CseI GACGC 1 cut(s) 11
CviAII CATG 1 cut(s) 341
CviJI RGCY 3 cut(s) 41, 287, 545
CviKI_1 RGCY 3 cut(s) 41, 287, 545
DdeI CTNAG 2 cut(s) 534, 558
DpnI GATC 1 cut(s) 577
DpnII GATC 1 cut(s) 575
EaeI YGGCCR 1 cut(s) 543
Eam1104I CTCTTC 3 cut(s) 48, 405, 515
EarI CTCTTC 3 cut(s) 48, 405, 515
EciI GGCGGA 1 cut(s) 87
Eco47I GGWCC 1 cut(s) 308
Eco57I CTGAAG 1 cut(s) 317
EcoRII CCWGG 1 cut(s) 567
Esp3I CGTCTC 1 cut(s) 201
FaeI CATG 1 cut(s) 344
FaiI YATR 4 cut(s) 146, 342, 437, 439
FalI AAGNNNNNCTT 2 cut(s) 30, 62
FatI CATG 1 cut(s) 340
FauNDI CATATG 1 cut(s) 437
Fnu4HI GCNGC 1 cut(s) 285
FokI GGATG 1 cut(s) 584
Fsp4HI GCNGC 1 cut(s) 285
GlaI GCGC 1 cut(s) 243
GluI GCNGC 1 cut(s) 285
HaeIII GGCC 1 cut(s) 545
HapII CCGG 1 cut(s) 104
HgaI GACGC 1 cut(s) 11
HhaI GCGC 1 cut(s) 244
Hin1II CATG 1 cut(s) 344
Hin6I GCGC 1 cut(s) 242
HinP1I GCGC 1 cut(s) 242
HinfI GANTC 3 cut(s) 173, 235, 392
HpaII CCGG 1 cut(s) 104
HphI GGTGA 1 cut(s) 503
Hpy188I TCNGA 6 cut(s) 206, 308, 321, 336, 359, 397
Hpy188III TCNNGA 3 cut(s) 26, 35, 517
Hpy99I CGWCG 3 cut(s) 9, 27, 294
HpyAV CCTTC 4 cut(s) 75, 87, 96, 473
HpyCH4III ACNGT 2 cut(s) 57, 401
HpyCH4V TGCA 2 cut(s) 224, 584
HpyF10VI GCNNNNNNNGC 1 cut(s) 438
HpyF3I CTNAG 2 cut(s) 534, 558
Hsp92II CATG 1 cut(s) 344
HspAI GCGC 1 cut(s) 242
Kzo9I GATC 1 cut(s) 575
LguI GCTCTTC 1 cut(s) 48
LmnI GCTCC 2 cut(s) 372, 423
LpnPI CCDG 5 cut(s) 117, 165, 527, 554, 581
Lsp1109I GCAGC 1 cut(s) 296
LweI GCATC 2 cut(s) 258, 352
MaeIII GTNAC 2 cut(s) 138, 491
MalI GATC 1 cut(s) 577
MboI GATC 1 cut(s) 575
MflI RGATCY 1 cut(s) 575
MlsI TGGCCA 1 cut(s) 545
MluCI AATT 4 cut(s) 29, 212, 594, 601
MluNI TGGCCA 1 cut(s) 545
MlyI GAGTC 1 cut(s) 244
MmeI TCCRAC 2 cut(s) 337, 344
MnlI CCTC 7 cut(s) 72, 103, 111, 148, 246, 271, 406
Mox20I TGGCCA 1 cut(s) 545
MroXI GAANNNNTTC 2 cut(s) 42, 330
MscI TGGCCA 1 cut(s) 545
MseI TTAA 1 cut(s) 257
Msp20I TGGCCA 1 cut(s) 545
MspI CCGG 1 cut(s) 104
MspR9I CCNGG 1 cut(s) 569
MvaI CCWGG 1 cut(s) 569
MwoI GCNNNNNNNGC 1 cut(s) 438
NdeI CATATG 1 cut(s) 437
NdeII GATC 1 cut(s) 575
NlaIII CATG 1 cut(s) 344
NlaIV GGNNCC 1 cut(s) 577
NmuCI GTSAC 2 cut(s) 138, 491
PciSI GCTCTTC 1 cut(s) 48
PcsI WCGNNNNNNNCGW 1 cut(s) 129
PdmI GAANNNNTTC 2 cut(s) 42, 330
PfeI GAWTC 2 cut(s) 173, 392
PfoI TCCNGGA 1 cut(s) 567
PkrI GCNGC 1 cut(s) 286
PleI GAGTC 1 cut(s) 243
PpsI GAGTC 1 cut(s) 243
Psp6I CCWGG 1 cut(s) 567
PspGI CCWGG 1 cut(s) 567
PspN4I GGNNCC 1 cut(s) 577
PspPI GGNCC 1 cut(s) 308
PsuI RGATCY 1 cut(s) 575
SapI GCTCTTC 1 cut(s) 48
SaqAI TTAA 1 cut(s) 257
SatI GCNGC 1 cut(s) 285
Sau3AI GATC 1 cut(s) 575
Sau96I GGNCC 1 cut(s) 308
SchI GAGTC 1 cut(s) 244
ScrFI CCNGG 1 cut(s) 569
SetI ASST 7 cut(s) 43, 79, 114, 257, 289, 313, 417
SfaNI GCATC 2 cut(s) 258, 352
SinI GGWCC 1 cut(s) 308
Sse9I AATT 4 cut(s) 29, 212, 594, 601
SsiI CCGC 1 cut(s) 98
StyD4I CCNGG 1 cut(s) 567
TaaI ACNGT 2 cut(s) 57, 401
TaqI TCGA 6 cut(s) 25, 132, 171, 238, 289, 454
TasI AATT 4 cut(s) 29, 212, 594, 601
TfiI GAWTC 2 cut(s) 173, 392
Tru1I TTAA 1 cut(s) 257
Tru9I TTAA 1 cut(s) 257
TscAI CASTG 1 cut(s) 60
TseFI GTSAC 2 cut(s) 138, 491
TseI GCWGC 1 cut(s) 284
Tsp45I GTSAC 2 cut(s) 138, 491
TspDTI ATGAA 3 cut(s) 57, 165, 360
TspGWI ACGGA 2 cut(s) 201, 307
TspRI CASTG 1 cut(s) 60
VpaK11BI GGWCC 1 cut(s) 308
XapI RAATTY 2 cut(s) 29, 594
XmnI GAANNNNTTC 2 cut(s) 42, 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.