Rorug02G0152400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0012157
Physical Location & Seq
Reverse (-)
13487690 .. 13488118
429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0152400.1

Sequence Viewer

Length: 261 bp
ATGAGCATGGGCTTCTCACGTGACTGCGACGCCTGTGATGATGACGGCCAGTGCAAGTACTGCTCCCTCGAGTTTCACCTCCGCGCTCGCTGCCACTTCGACCAAACCCTAGATGTCACCAACAAGGAACTCCTCAGCTCCGACCACACCGTCGTCCCATCAATTTCTCAACGCCTCCGGTTACGAAGCTTCCGAACAGAGAGGGATTATCATATTGAAGTTGGAAAGGGGGCAAGAGCTGAGGCTAAGGGCTATTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

9.88

Weight (kDa)

6.39

Isoelectric Point (pI)

57.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012157)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G67640
fragaria_vesca FvH4_1g17950
malus_domestica MD15G1299000.v1.1
prunus_persica Prupe.6G218900_v2.0.a1
pyrus_communis pycom15g26160
rosa_chinensis RchiOBHm_Chr2g0108411
rosa_laevigata RLG00000017666
rosa_multiflora Rmu_sc0002372.1_g000022 Rmu_sc0009208.1_g000006
rosa_roxburghii Rroxscaffold_2G00135180 Rroxscaffold_2G00135380
rosa_rugosa Rorug02G0152400 Rorug02G0152500
rosa_samantha Rh2AG201600 Rh2BG214500 Rh2CG205800 Rh2DG208900
rosa_wichuraiana Rw2G016040 Rw2G016100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 149
AccII CGCG 1 cut(s) 84
AciI CCGC 1 cut(s) 82
AcoI YGGCCR 1 cut(s) 46
AcvI CACGTG 1 cut(s) 20
AcyI GRCGYC 1 cut(s) 30
AfaI GTAC 1 cut(s) 59
AgsI TTSAA 1 cut(s) 218
AluBI AGCT 3 cut(s) 138, 189, 239
AluI AGCT 3 cut(s) 138, 189, 239
Ama87I CYCGRG 1 cut(s) 68
AoxI GGCC 1 cut(s) 46
ApeKI GCWGC 1 cut(s) 90
AspLEI GCGC 1 cut(s) 86
AsuHPI GGTGA 2 cut(s) 68, 109
AvaI CYCGRG 1 cut(s) 68
BbrPI CACGTG 1 cut(s) 20
BbvCI CCTCAGC 2 cut(s) 134, 240
BbvI GCAGC 1 cut(s) 77
BccI CCATC 1 cut(s) 166
BceAI ACGGC 1 cut(s) 61
BfaI CTAG 2 cut(s) 110, 259
BisI GCNGC 1 cut(s) 91
BlsI GCNGC 1 cut(s) 92
BmcAI AGTACT 1 cut(s) 59
BmeT110I CYCGRG 1 cut(s) 68
Bpu10I CCTNAGC 3 cut(s) 134, 240, 246
BsaAI YACGTR 1 cut(s) 20
BsaHI GRCGYC 1 cut(s) 30
BsaWI WCCGGW 1 cut(s) 177
Bse1I ACTGG 1 cut(s) 49
BseMII CTCAG 2 cut(s) 148, 231
BseNI ACTGG 1 cut(s) 49
BseRI GAGGAG 1 cut(s) 122
BseXI GCAGC 1 cut(s) 77
Bsh1236I CGCG 1 cut(s) 84
BshFI GGCC 1 cut(s) 48
BsiHKCI CYCGRG 1 cut(s) 68
BsiSI CCGG 1 cut(s) 178
BslFI GGGAC 1 cut(s) 140
BsmFI GGGAC 1 cut(s) 140
BsnI GGCC 1 cut(s) 48
BsoBI CYCGRG 1 cut(s) 68
BspACI CCGC 1 cut(s) 82
BspANI GGCC 1 cut(s) 48
BspCNI CTCAG 2 cut(s) 147, 232
BspFNI CGCG 1 cut(s) 84
BsrI ACTGG 1 cut(s) 49
BssNI GRCGYC 1 cut(s) 30
Bst4CI ACNGT 1 cut(s) 151
BstACI GRCGYC 1 cut(s) 30
BstAPI GCANNNNNTGC 1 cut(s) 60
BstBAI YACGTR 1 cut(s) 20
BstC8I GCNNGC 1 cut(s) 88
BstDEI CTNAG 3 cut(s) 134, 240, 246
BstFNI CGCG 1 cut(s) 84
BstHHI GCGC 1 cut(s) 86
BstMWI GCNNNNNNNGC 2 cut(s) 60, 90
BstUI CGCG 1 cut(s) 84
BstV1I GCAGC 1 cut(s) 77
BsuRI GGCC 1 cut(s) 48
BtsIMutI CAGTG 1 cut(s) 56
Cac8I GCNNGC 1 cut(s) 88
CfoI GCGC 1 cut(s) 86
CseI GACGC 1 cut(s) 38
Csp6I GTAC 1 cut(s) 58
CviAII CATG 1 cut(s) 7
CviJI RGCY 7 cut(s) 12, 48, 138, 189, 239, 245, 252
CviKI_1 RGCY 7 cut(s) 12, 48, 138, 189, 239, 245, 252
CviQI GTAC 1 cut(s) 58
DdeI CTNAG 3 cut(s) 134, 240, 246
DrdI GACNNNNNNGTC 1 cut(s) 149
DseDI GACNNNNNNGTC 1 cut(s) 149
EaeI YGGCCR 1 cut(s) 46
Eco72I CACGTG 1 cut(s) 20
Eco88I CYCGRG 1 cut(s) 68
FaeI CATG 1 cut(s) 10
FaiI YATR 2 cut(s) 8, 213
FaqI GGGAC 1 cut(s) 140
FatI CATG 1 cut(s) 6
Fnu4HI GCNGC 1 cut(s) 91
Fsp4HI GCNGC 1 cut(s) 91
FspBI CTAG 2 cut(s) 110, 259
GlaI GCGC 1 cut(s) 85
GluI GCNGC 1 cut(s) 91
HaeIII GGCC 1 cut(s) 48
HapII CCGG 1 cut(s) 178
HgaI GACGC 1 cut(s) 38
HhaI GCGC 1 cut(s) 86
Hin1I GRCGYC 1 cut(s) 30
Hin1II CATG 1 cut(s) 10
Hin6I GCGC 1 cut(s) 84
HinP1I GCGC 1 cut(s) 84
HindIII AAGCTT 1 cut(s) 187
HpaII CCGG 1 cut(s) 178
HphI GGTGA 2 cut(s) 68, 109
Hpy188I TCNGA 2 cut(s) 142, 194
Hpy99I CGWCG 2 cut(s) 32, 155
HpyCH4III ACNGT 1 cut(s) 151
HpyCH4IV ACGT 1 cut(s) 19
HpyCH4V TGCA 1 cut(s) 54
HpyF10VI GCNNNNNNNGC 2 cut(s) 60, 90
HpyF3I CTNAG 3 cut(s) 134, 240, 246
HpySE526I ACGT 1 cut(s) 19
Hsp92I GRCGYC 1 cut(s) 30
Hsp92II CATG 1 cut(s) 10
HspAI GCGC 1 cut(s) 84
LmnI GCTCC 2 cut(s) 68, 143
LpnPI CCDG 3 cut(s) 46, 62, 191
Lsp1109I GCAGC 1 cut(s) 77
MaeI CTAG 2 cut(s) 110, 259
MaeII ACGT 1 cut(s) 19
MaeIII GTNAC 3 cut(s) 20, 115, 180
MluCI AATT 1 cut(s) 162
MmeI TCCRAC 2 cut(s) 165, 202
MnlI CCTC 6 cut(s) 77, 89, 143, 185, 195, 235
MspI CCGG 1 cut(s) 178
MvnI CGCG 1 cut(s) 84
MwoI GCNNNNNNNGC 2 cut(s) 60, 90
NlaIII CATG 1 cut(s) 10
NmuCI GTSAC 2 cut(s) 20, 115
PaeR7I CTCGAG 1 cut(s) 68
PcsI WCGNNNNNNNCGW 1 cut(s) 190
PkrI GCNGC 1 cut(s) 92
PmaCI CACGTG 1 cut(s) 20
PmlI CACGTG 1 cut(s) 20
Ppu21I YACGTR 1 cut(s) 20
PspCI CACGTG 1 cut(s) 20
PspXI VCTCGAGB 1 cut(s) 68
RsaI GTAC 1 cut(s) 59
RsaNI GTAC 1 cut(s) 58
SatI GCNGC 1 cut(s) 91
ScaI AGTACT 1 cut(s) 59
SetI ASST 5 cut(s) 22, 81, 140, 191, 241
Sfr274I CTCGAG 1 cut(s) 68
SlaI CTCGAG 1 cut(s) 68
SmlI CTYRAG 1 cut(s) 68
SmoI CTYRAG 1 cut(s) 68
Sse9I AATT 1 cut(s) 162
SsiI CCGC 1 cut(s) 82
SspMI CTAG 2 cut(s) 110, 259
TaaI ACNGT 1 cut(s) 151
TaiI ACGT 1 cut(s) 22
TaqI TCGA 2 cut(s) 69, 99
TasI AATT 1 cut(s) 162
TatI WGTACW 1 cut(s) 57
TscAI CASTG 1 cut(s) 56
TseFI GTSAC 2 cut(s) 20, 115
TseI GCWGC 1 cut(s) 90
Tsp45I GTSAC 2 cut(s) 20, 115
TspRI CASTG 1 cut(s) 56
XhoI CTCGAG 1 cut(s) 68
XspI CTAG 2 cut(s) 110, 259
ZrmI AGTACT 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.