Rroxscaffold_2G00135180

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0012157
Physical Location & Seq
Forward (+)
72802244 .. 72803395
1152 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00135180.1

Sequence Viewer

Length: 465 bp
ATGCGCCGAGAAGAGAAGCGACGCAAGTTCAATGAGGCTGTCCTCAACACGCTTTATCCTCCTCCTTCTCCTCCATCACCACCACCCAAAGATGAGGACGTAGACTTGAACATTTTACGTCAAGACTTTGAACTAGAAAGTGGGTCTTCAGCTACTAGCGGTGATGAGGATGGTAATGGCGAAAGTGAGATTCAGAAGCTTACGAGGGCCCAGCGGAAGAGACTCCGGAAGAAGAAGCTTAAGGAAGACGCTTCTCGACGCAGGCAAATCATAGGGCCTCTTTTGCCGTTGACAGTCGGTGAAGGTGAAAATTGCACTCCAGATGTTCGACGAAATGCCTCTGAGGAACCAAAATGCATTTGTGTAGGTGATCAGCCACCTCAATCTGGTTGCAGTAATCCGAAGAACAAGGTGAAGCAAAGGAGGAAGGCGAAGAAGGTAGCCAAGGAAAGAGAGCAACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

17.47

Weight (kDa)

9.56

Isoelectric Point (pI)

84.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012157)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G67640
fragaria_vesca FvH4_1g17950
malus_domestica MD15G1299000.v1.1
prunus_persica Prupe.6G218900_v2.0.a1
pyrus_communis pycom15g26160
rosa_chinensis RchiOBHm_Chr2g0108411
rosa_laevigata RLG00000017666
rosa_multiflora Rmu_sc0002372.1_g000022 Rmu_sc0009208.1_g000006
rosa_roxburghii Rroxscaffold_2G00135180 Rroxscaffold_2G00135380
rosa_rugosa Rorug02G0152400 Rorug02G0152500
rosa_samantha Rh2AG201600 Rh2BG214500 Rh2CG205800 Rh2DG208900
rosa_wichuraiana Rw2G016040 Rw2G016100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 102
AccIII TCCGGA 1 cut(s) 225
AciI CCGC 2 cut(s) 159, 214
AcuI CTGAAG 1 cut(s) 132
AfiI CCNNNNNNNGG 1 cut(s) 386
AflII CTTAAG 1 cut(s) 239
AgsI TTSAA 3 cut(s) 31, 109, 131
AluBI AGCT 3 cut(s) 152, 199, 238
AluI AGCT 3 cut(s) 152, 199, 238
Alw26I GTCTC 1 cut(s) 214
Aor13HI TCCGGA 1 cut(s) 225
AoxI GGCC 2 cut(s) 207, 275
ApaI GGGCCC 1 cut(s) 211
AspLEI GCGC 1 cut(s) 6
AspS9I GGNCC 3 cut(s) 207, 208, 275
AsuHPI GGTGA 6 cut(s) 69, 173, 311, 317, 380, 424
BaeGI GKGCMC 1 cut(s) 211
BanII GRGCYC 1 cut(s) 211
BbsI GAAGAC 2 cut(s) 138, 252
BccI CCATC 2 cut(s) 82, 164
BceAI ACGGC 1 cut(s) 271
BclI TGATCA 1 cut(s) 370
BcoDI GTCTC 1 cut(s) 214
BfaI CTAG 2 cut(s) 134, 156
BfrI CTTAAG 1 cut(s) 239
BmgT120I GGNCC 3 cut(s) 207, 208, 275
BmiI GGNNCC 2 cut(s) 209, 348
BpiI GAAGAC 2 cut(s) 138, 252
BpmI CTGGAG 1 cut(s) 303
BsaJI CCNNGG 1 cut(s) 444
BsaWI WCCGGW 1 cut(s) 225
Bsc4I CCNNNNNNNGG 1 cut(s) 386
BseAI TCCGGA 1 cut(s) 225
BseDI CCNNGG 1 cut(s) 444
BseGI GGATG 1 cut(s) 175
BseLI CCNNNNNNNGG 1 cut(s) 386
BseMII CTCAG 1 cut(s) 333
BseRI GAGGAG 2 cut(s) 51, 60
BseSI GKGCMC 1 cut(s) 211
BseYI CCCAGC 1 cut(s) 210
BshFI GGCC 2 cut(s) 209, 277
BsiSI CCGG 1 cut(s) 226
BslI CCNNNNNNNGG 1 cut(s) 386
BsmAI GTCTC 1 cut(s) 214
BsnI GGCC 2 cut(s) 209, 277
Bsp120I GGGCCC 1 cut(s) 207
Bsp1286I GDGCHC 1 cut(s) 211
Bsp13I TCCGGA 1 cut(s) 225
Bsp143I GATC 1 cut(s) 370
BspACI CCGC 2 cut(s) 159, 214
BspANI GGCC 2 cut(s) 209, 277
BspCNI CTCAG 1 cut(s) 334
BspEI TCCGGA 1 cut(s) 225
BspLI GGNNCC 2 cut(s) 209, 348
BspTI CTTAAG 1 cut(s) 239
BssECI CCNNGG 1 cut(s) 444
BssMI GATC 1 cut(s) 370
BssT1I CCWWGG 1 cut(s) 444
Bst4CI ACNGT 1 cut(s) 295
Bst6I CTCTTC 2 cut(s) 6, 212
BstAFI CTTAAG 1 cut(s) 239
BstC8I GCNNGC 1 cut(s) 263
BstDEI CTNAG 1 cut(s) 342
BstF5I GGATG 1 cut(s) 175
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 1 cut(s) 373
BstMAI GTCTC 1 cut(s) 214
BstMBI GATC 1 cut(s) 370
BstMWI GCNNNNNNNGC 1 cut(s) 283
BstSLI GKGCMC 1 cut(s) 211
BstV2I GAAGAC 2 cut(s) 138, 252
BsuRI GGCC 2 cut(s) 209, 277
BtsCI GGATG 1 cut(s) 175
Cac8I GCNNGC 1 cut(s) 263
CfoI GCGC 1 cut(s) 6
Cfr13I GGNCC 3 cut(s) 207, 208, 275
CseI GACGC 3 cut(s) 30, 257, 267
CviJI RGCY 8 cut(s) 38, 152, 199, 209, 238, 277, 376, 443
CviKI_1 RGCY 8 cut(s) 38, 152, 199, 209, 238, 277, 376, 443
DdeI CTNAG 1 cut(s) 342
DpnI GATC 1 cut(s) 372
DpnII GATC 1 cut(s) 370
Eam1104I CTCTTC 2 cut(s) 6, 212
EarI CTCTTC 2 cut(s) 6, 212
Eco130I CCWWGG 1 cut(s) 444
Eco24I GRGCYC 1 cut(s) 211
Eco57I CTGAAG 1 cut(s) 132
EcoO109I RGGNCCY 2 cut(s) 207, 275
EcoT14I CCWWGG 1 cut(s) 444
EcoT22I ATGCAT 1 cut(s) 359
EcoT38I GRGCYC 1 cut(s) 211
ErhI CCWWGG 1 cut(s) 444
FaiI YATR 1 cut(s) 272
FalI AAGNNNNNCTT 2 cut(s) 130, 162
FbaI TGATCA 1 cut(s) 370
FblI GTMKAC 1 cut(s) 102
FokI GGATG 1 cut(s) 182
FriOI GRGCYC 1 cut(s) 211
FspBI CTAG 2 cut(s) 134, 156
GlaI GCGC 1 cut(s) 5
GsaI CCCAGC 1 cut(s) 214
GsuI CTGGAG 1 cut(s) 303
HaeIII GGCC 2 cut(s) 209, 277
HapII CCGG 1 cut(s) 226
HgaI GACGC 3 cut(s) 30, 257, 267
HhaI GCGC 1 cut(s) 6
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HincII GTYRAC 1 cut(s) 291
HindII GTYRAC 1 cut(s) 291
HindIII AAGCTT 2 cut(s) 197, 236
HinfI GANTC 2 cut(s) 190, 222
HpaII CCGG 1 cut(s) 226
HphI GGTGA 6 cut(s) 69, 173, 311, 317, 380, 424
Hpy166II GTNNAC 2 cut(s) 103, 291
Hpy188I TCNGA 3 cut(s) 195, 343, 402
Hpy188III TCNNGA 4 cut(s) 122, 226, 255, 320
Hpy8I GTNNAC 2 cut(s) 103, 291
Hpy99I CGWCG 3 cut(s) 24, 261, 333
HpyAV CCTTC 4 cut(s) 75, 296, 421, 430
HpyCH4III ACNGT 1 cut(s) 295
HpyCH4IV ACGT 2 cut(s) 99, 118
HpyCH4V TGCA 3 cut(s) 315, 357, 393
HpyF10VI GCNNNNNNNGC 1 cut(s) 283
HpyF3I CTNAG 1 cut(s) 342
HpySE526I ACGT 2 cut(s) 99, 118
HspAI GCGC 1 cut(s) 4
Kpn2I TCCGGA 1 cut(s) 225
Ksp22I TGATCA 1 cut(s) 370
Kzo9I GATC 1 cut(s) 370
LpnPI CCDG 5 cut(s) 224, 239, 247, 333, 372
MaeI CTAG 2 cut(s) 134, 156
MaeII ACGT 2 cut(s) 99, 118
MalI GATC 1 cut(s) 372
MboI GATC 1 cut(s) 370
MboII GAAGA 8 cut(s) 23, 138, 229, 241, 244, 257, 415, 445
MhlI GDGCHC 1 cut(s) 211
MluCI AATT 1 cut(s) 310
MlyI GAGTC 1 cut(s) 216
Mph1103I ATGCAT 1 cut(s) 359
MroI TCCGGA 1 cut(s) 225
MseI TTAA 1 cut(s) 240
MspA1I CMGCKG 1 cut(s) 214
MspCI CTTAAG 1 cut(s) 239
MspI CCGG 1 cut(s) 226
MwoI GCNNNNNNNGC 1 cut(s) 283
NdeII GATC 1 cut(s) 370
NlaIV GGNNCC 2 cut(s) 209, 348
NmeAIII GCCGAG 1 cut(s) 32
NsiI ATGCAT 1 cut(s) 359
PfeI GAWTC 1 cut(s) 190
PleI GAGTC 1 cut(s) 216
PpsI GAGTC 1 cut(s) 216
PspFI CCCAGC 1 cut(s) 210
PspN4I GGNNCC 2 cut(s) 209, 348
PspOMI GGGCCC 1 cut(s) 207
PspPI GGNCC 3 cut(s) 207, 208, 275
SaqAI TTAA 1 cut(s) 240
Sau3AI GATC 1 cut(s) 370
Sau96I GGNCC 3 cut(s) 207, 208, 275
SchI GAGTC 1 cut(s) 216
SduI GDGCHC 1 cut(s) 211
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
Sse9I AATT 1 cut(s) 310
SsiI CCGC 2 cut(s) 159, 214
SspMI CTAG 2 cut(s) 134, 156
StyI CCWWGG 1 cut(s) 444
TaaI ACNGT 1 cut(s) 295
TaiI ACGT 2 cut(s) 102, 121
TaqI TCGA 2 cut(s) 256, 328
TasI AATT 1 cut(s) 310
TfiI GAWTC 1 cut(s) 190
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
Vha464I CTTAAG 1 cut(s) 239
XmiI GTMKAC 1 cut(s) 102
XspI CTAG 2 cut(s) 134, 156
Zsp2I ATGCAT 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.