FvH4_1g17950

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0012157
Physical Location & Seq
Reverse (-)
10431051 .. 10432016
966 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g17950.t1

Sequence Viewer

Length: 441 bp
ATGCGCCGAGAAGAGAAGCGACGCAAGTTCAATGAGGCTGTCCTCAACACGCTTTTTCCTCCTCCATCACCATCGCCCAAAGATGAGGACGTACCCTTCAACGTTTCACGTCAAGACATTGAACTAGAAACTGGGTCTTCAGCTACCAGCGGTGATGAGGATGATGACAGCGAAGGCGAGACCCAGAAGCTCACGAGGGCCCAGCGGAAGAGAATGCGGAAGAAGAAGCTTAAGGAAGACGCTTCTCGGCGCAAGCAAATCATAGGGCCTCTCCTTCCGTCGAAGATCGGTGAAGGTGAAAATTGCACTCCAGATGCTCGACGAAATGCCTCTGAGGAACCAAGTGATGAGCCAATTCAACCTGGTTGCAGTAATCAGAAGAATAAGGTGAAGCAAAGGAGGAAGGCGAAGAAGCTAGCCAGGGAAAGAGAGCAGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

16.72

Weight (kDa)

9.54

Isoelectric Point (pI)

79.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012157)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G67640
fragaria_vesca FvH4_1g17950
malus_domestica MD15G1299000.v1.1
prunus_persica Prupe.6G218900_v2.0.a1
pyrus_communis pycom15g26160
rosa_chinensis RchiOBHm_Chr2g0108411
rosa_laevigata RLG00000017666
rosa_multiflora Rmu_sc0002372.1_g000022 Rmu_sc0009208.1_g000006
rosa_roxburghii Rroxscaffold_2G00135180 Rroxscaffold_2G00135380
rosa_rugosa Rorug02G0152400 Rorug02G0152500
rosa_samantha Rh2AG201600 Rh2BG214500 Rh2CG205800 Rh2DG208900
rosa_wichuraiana Rw2G016040 Rw2G016100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 150, 205, 217
AclI AACGTT 1 cut(s) 102
AcuI CTGAAG 1 cut(s) 123
AfaI GTAC 1 cut(s) 93
AflII CTTAAG 1 cut(s) 230
AgsI TTSAA 4 cut(s) 31, 100, 122, 359
AjiI CACGTC 1 cut(s) 110
AjnI CCWGG 2 cut(s) 361, 419
AluBI AGCT 4 cut(s) 143, 190, 229, 415
AluI AGCT 4 cut(s) 143, 190, 229, 415
Alw26I GTCTC 1 cut(s) 173
AoxI GGCC 2 cut(s) 198, 266
ApaI GGGCCC 1 cut(s) 202
ApeKI GCWGC 1 cut(s) 433
AspLEI GCGC 2 cut(s) 6, 252
AspS9I GGNCC 3 cut(s) 198, 199, 266
AsuHPI GGTGA 5 cut(s) 60, 164, 302, 308, 400
AsuNHI GCTAGC 1 cut(s) 415
BaeGI GKGCMC 1 cut(s) 202
BanII GRGCYC 1 cut(s) 202
BauI CACGAG 1 cut(s) 193
BbsI GAAGAC 2 cut(s) 129, 243
BccI CCATC 2 cut(s) 73, 79
BciT130I CCWGG 2 cut(s) 363, 421
BcoDI GTCTC 1 cut(s) 173
BfaI CTAG 2 cut(s) 125, 416
BfrI CTTAAG 1 cut(s) 230
BisI GCNGC 1 cut(s) 434
BlsI GCNGC 1 cut(s) 435
Bme1390I CCNGG 2 cut(s) 363, 421
BmgBI CACGTC 1 cut(s) 110
BmgT120I GGNCC 3 cut(s) 198, 199, 266
BmiI GGNNCC 2 cut(s) 200, 339
BmrFI CCNGG 2 cut(s) 363, 421
BmrI ACTGGG 1 cut(s) 141
BmsI GCATC 1 cut(s) 304
BmtI GCTAGC 1 cut(s) 419
BmuI ACTGGG 1 cut(s) 141
BpiI GAAGAC 2 cut(s) 129, 243
BpmI CTGGAG 1 cut(s) 294
BsaI GGTCTC 1 cut(s) 173
BsaJI CCNNGG 1 cut(s) 420
Bse1I ACTGG 1 cut(s) 136
BseBI CCWGG 2 cut(s) 363, 421
BseDI CCNNGG 1 cut(s) 420
BseGI GGATG 1 cut(s) 166
BseMII CTCAG 1 cut(s) 324
BseNI ACTGG 1 cut(s) 136
BseRI GAGGAG 1 cut(s) 51
BseSI GKGCMC 1 cut(s) 202
BseYI CCCAGC 1 cut(s) 201
BshFI GGCC 2 cut(s) 200, 268
BsmAI GTCTC 1 cut(s) 173
BsmI GAATGC 1 cut(s) 219
BsnI GGCC 2 cut(s) 200, 268
Bso31I GGTCTC 1 cut(s) 173
Bsp120I GGGCCC 1 cut(s) 198
Bsp1286I GDGCHC 1 cut(s) 202
Bsp143I GATC 1 cut(s) 285
BspACI CCGC 3 cut(s) 150, 205, 217
BspANI GGCC 2 cut(s) 200, 268
BspCNI CTCAG 1 cut(s) 325
BspLI GGNNCC 2 cut(s) 200, 339
BspOI GCTAGC 1 cut(s) 419
BspTI CTTAAG 1 cut(s) 230
BspTNI GGTCTC 1 cut(s) 173
BsrI ACTGG 1 cut(s) 136
BssECI CCNNGG 1 cut(s) 420
BssMI GATC 1 cut(s) 285
BssSI CACGAG 1 cut(s) 193
Bst2BI CACGAG 1 cut(s) 193
Bst2UI CCWGG 2 cut(s) 363, 421
Bst6I CTCTTC 2 cut(s) 6, 203
BstAFI CTTAAG 1 cut(s) 230
BstC8I GCNNGC 2 cut(s) 254, 417
BstDEI CTNAG 1 cut(s) 333
BstF5I GGATG 1 cut(s) 166
BstHHI GCGC 2 cut(s) 6, 252
BstKTI GATC 1 cut(s) 288
BstMAI GTCTC 1 cut(s) 173
BstMBI GATC 1 cut(s) 285
BstNI CCWGG 2 cut(s) 363, 421
BstSCI CCNGG 2 cut(s) 361, 419
BstSLI GKGCMC 1 cut(s) 202
BstV2I GAAGAC 2 cut(s) 129, 243
BsuRI GGCC 2 cut(s) 200, 268
BtgZI GCGATG 1 cut(s) 57
BtrI CACGTC 1 cut(s) 110
BtsCI GGATG 1 cut(s) 166
Cac8I GCNNGC 2 cut(s) 254, 417
CfoI GCGC 2 cut(s) 6, 252
Cfr13I GGNCC 3 cut(s) 198, 199, 266
CseI GACGC 2 cut(s) 30, 248
CsiI ACCWGGT 1 cut(s) 361
Csp6I GTAC 1 cut(s) 92
CviJI RGCY 9 cut(s) 38, 143, 190, 200, 229, 268, 352, 415, 419
CviKI_1 RGCY 9 cut(s) 38, 143, 190, 200, 229, 268, 352, 415, 419
CviQI GTAC 1 cut(s) 92
DdeI CTNAG 1 cut(s) 333
DpnI GATC 1 cut(s) 287
DpnII GATC 1 cut(s) 285
Eam1104I CTCTTC 2 cut(s) 6, 203
EarI CTCTTC 2 cut(s) 6, 203
Eco24I GRGCYC 1 cut(s) 202
Eco31I GGTCTC 1 cut(s) 173
Eco57I CTGAAG 1 cut(s) 123
EcoO109I RGGNCCY 2 cut(s) 198, 266
EcoRII CCWGG 2 cut(s) 361, 419
EcoT38I GRGCYC 1 cut(s) 202
FaiI YATR 1 cut(s) 263
Fnu4HI GCNGC 1 cut(s) 434
FokI GGATG 1 cut(s) 173
FriOI GRGCYC 1 cut(s) 202
Fsp4HI GCNGC 1 cut(s) 434
FspBI CTAG 2 cut(s) 125, 416
GlaI GCGC 2 cut(s) 5, 251
GluI GCNGC 1 cut(s) 434
GsaI CCCAGC 1 cut(s) 205
GsuI CTGGAG 1 cut(s) 294
HaeIII GGCC 2 cut(s) 200, 268
HgaI GACGC 2 cut(s) 30, 248
HhaI GCGC 2 cut(s) 6, 252
Hin6I GCGC 2 cut(s) 4, 250
HinP1I GCGC 2 cut(s) 4, 250
HindIII AAGCTT 1 cut(s) 227
HphI GGTGA 5 cut(s) 60, 164, 302, 308, 400
Hpy188I TCNGA 2 cut(s) 334, 378
Hpy188III TCNNGA 3 cut(s) 113, 193, 311
Hpy99I CGWCG 3 cut(s) 24, 283, 324
HpyAV CCTTC 5 cut(s) 106, 167, 284, 287, 397
HpyCH4IV ACGT 3 cut(s) 90, 102, 109
HpyCH4V TGCA 2 cut(s) 306, 369
HpyF3I CTNAG 1 cut(s) 333
HpySE526I ACGT 3 cut(s) 90, 102, 109
HspAI GCGC 2 cut(s) 4, 250
Kzo9I GATC 1 cut(s) 285
LpnPI CCDG 9 cut(s) 117, 160, 197, 215, 324, 348, 375, 406, 433
LweI GCATC 1 cut(s) 304
MabI ACCWGGT 1 cut(s) 361
MaeI CTAG 2 cut(s) 125, 416
MaeII ACGT 3 cut(s) 90, 102, 109
MalI GATC 1 cut(s) 287
MboI GATC 1 cut(s) 285
MboII GAAGA 9 cut(s) 23, 129, 220, 232, 235, 248, 295, 391, 421
MhlI GDGCHC 1 cut(s) 202
MluCI AATT 2 cut(s) 301, 354
MseI TTAA 1 cut(s) 231
MspA1I CMGCKG 2 cut(s) 150, 205
MspCI CTTAAG 1 cut(s) 230
MspR9I CCNGG 2 cut(s) 363, 421
Mva1269I GAATGC 1 cut(s) 219
MvaI CCWGG 2 cut(s) 363, 421
NdeII GATC 1 cut(s) 285
NheI GCTAGC 1 cut(s) 415
NlaIV GGNNCC 2 cut(s) 200, 339
NmeAIII GCCGAG 2 cut(s) 32, 226
PctI GAATGC 1 cut(s) 219
PkrI GCNGC 1 cut(s) 435
Psp1406I AACGTT 1 cut(s) 102
Psp6I CCWGG 2 cut(s) 361, 419
PspFI CCCAGC 1 cut(s) 201
PspGI CCWGG 2 cut(s) 361, 419
PspN4I GGNNCC 2 cut(s) 200, 339
PspOMI GGGCCC 1 cut(s) 198
PspPI GGNCC 3 cut(s) 198, 199, 266
RsaI GTAC 1 cut(s) 93
RsaNI GTAC 1 cut(s) 92
SaqAI TTAA 1 cut(s) 231
SatI GCNGC 1 cut(s) 434
Sau3AI GATC 1 cut(s) 285
Sau96I GGNCC 3 cut(s) 198, 199, 266
ScrFI CCNGG 2 cut(s) 363, 421
SduI GDGCHC 1 cut(s) 202
SexAI ACCWGGT 1 cut(s) 361
SfaNI GCATC 1 cut(s) 304
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
Sse9I AATT 2 cut(s) 301, 354
SsiI CCGC 3 cut(s) 150, 205, 217
SspMI CTAG 2 cut(s) 125, 416
StyD4I CCNGG 2 cut(s) 361, 419
TaiI ACGT 3 cut(s) 93, 105, 112
TaqI TCGA 2 cut(s) 281, 319
TasI AATT 2 cut(s) 301, 354
Tru1I TTAA 1 cut(s) 231
Tru9I TTAA 1 cut(s) 231
TseI GCWGC 1 cut(s) 433
TspGWI ACGGA 1 cut(s) 267
Vha464I CTTAAG 1 cut(s) 230
XspI CTAG 2 cut(s) 125, 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.