Prupe.6G218900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0012157
Physical Location & Seq
Forward (+)
22525280 .. 22526453
1174 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G218900.1

Sequence Viewer

Length: 486 bp
ATGCGCAGGGAAGAGAAGAGACGCAAGTTCAATGAAGCTGTCCTCAACACACTTTTCCCGCCTCCTTCCCCTCCATCATCACCACCAGTACACAGTCCAAAAGATGAGGACGTGCCATTGAGCATTTTGCTTCAAGACTTTGAAGAAGACTTGGGGGAAAGTGGGTCTGCAACGACGAGCGGTGACGATGATGGTAATGGTGAAAGTGAGCCTCAGAGGCTTACAAGGGCTCAGCGGAAGAGACTCCGCAAGAAGAAGCTCAAGGAAGATGCTTCCCGCCGTAGGGAACTTATTGGGCCCCTTTTACCTCCAACCGTCGATCAAGGTGAAAACGAAGCTCAAGGTGTTCGACGTAATGCCTCTGAGGAACCTGATGCTGCTATCGTCGAGAAACCAGGAGATGAGCCACCTGCTTGCAGTAATCAGAACAAGGTAAAGCAAAGGAGGAAGGCAAAGAAGCTGGCCAGGGAAAGAGAGCAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

18.1

Weight (kDa)

7.82

Isoelectric Point (pI)

85.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012157)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G67640
fragaria_vesca FvH4_1g17950
malus_domestica MD15G1299000.v1.1
prunus_persica Prupe.6G218900_v2.0.a1
pyrus_communis pycom15g26160
rosa_chinensis RchiOBHm_Chr2g0108411
rosa_laevigata RLG00000017666
rosa_multiflora Rmu_sc0002372.1_g000022 Rmu_sc0009208.1_g000006
rosa_roxburghii Rroxscaffold_2G00135180 Rroxscaffold_2G00135380
rosa_rugosa Rorug02G0152400 Rorug02G0152500
rosa_samantha Rh2AG201600 Rh2BG214500 Rh2CG205800 Rh2DG208900
rosa_wichuraiana Rw2G016040 Rw2G016100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 418
Acc16I TGCGCA 1 cut(s) 5
Acc36I ACCTGC 1 cut(s) 418
AccBSI CCGCTC 1 cut(s) 180
AciI CCGC 5 cut(s) 59, 180, 235, 247, 277
AcoI YGGCCR 1 cut(s) 462
AfaI GTAC 1 cut(s) 90
AfiI CCNNNNNNNGG 2 cut(s) 282, 283
AgsI TTSAA 3 cut(s) 31, 134, 143
AjiI CACGTC 1 cut(s) 112
AjnI CCWGG 2 cut(s) 394, 464
AluBI AGCT 4 cut(s) 38, 259, 338, 460
AluI AGCT 4 cut(s) 38, 259, 338, 460
Alw26I GTCTC 2 cut(s) 13, 235
AoxI GGCC 2 cut(s) 296, 462
ApaI GGGCCC 1 cut(s) 300
ApeKI GCWGC 1 cut(s) 377
AspLEI GCGC 1 cut(s) 6
AspS9I GGNCC 2 cut(s) 296, 297
AsuHPI GGTGA 4 cut(s) 72, 194, 212, 338
BaeGI GKGCMC 1 cut(s) 300
BalI TGGCCA 1 cut(s) 464
BanII GRGCYC 2 cut(s) 232, 300
BbsI GAAGAC 1 cut(s) 153
BbvI GCAGC 1 cut(s) 364
BccI CCATC 2 cut(s) 82, 185
BceAI ACGGC 1 cut(s) 264
BciT130I CCWGG 2 cut(s) 396, 466
BcoDI GTCTC 2 cut(s) 13, 235
BfuAI ACCTGC 1 cut(s) 418
BglI GCCNNNNNGGC 1 cut(s) 217
BisI GCNGC 1 cut(s) 378
BlpI GCTNAGC 1 cut(s) 231
BlsI GCNGC 1 cut(s) 379
Bme1390I CCNGG 2 cut(s) 396, 466
BmgBI CACGTC 1 cut(s) 112
BmgT120I GGNCC 2 cut(s) 296, 297
BmiI GGNNCC 3 cut(s) 298, 299, 369
BmrFI CCNGG 2 cut(s) 396, 466
BmsI GCATC 2 cut(s) 259, 364
BpiI GAAGAC 1 cut(s) 153
Bpu1102I GCTNAGC 1 cut(s) 231
BpuEI CTTGAG 2 cut(s) 245, 324
BsaJI CCNNGG 1 cut(s) 465
Bsc4I CCNNNNNNNGG 2 cut(s) 282, 283
Bse1I ACTGG 1 cut(s) 86
BseBI CCWGG 2 cut(s) 396, 466
BseDI CCNNGG 1 cut(s) 465
BseLI CCNNNNNNNGG 2 cut(s) 282, 283
BseMII CTCAG 3 cut(s) 227, 245, 354
BseNI ACTGG 1 cut(s) 86
BseSI GKGCMC 1 cut(s) 300
BseXI GCAGC 1 cut(s) 364
BshFI GGCC 2 cut(s) 298, 464
BslI CCNNNNNNNGG 2 cut(s) 282, 283
BsmAI GTCTC 2 cut(s) 13, 235
BsmBI CGTCTC 1 cut(s) 13
BsnI GGCC 2 cut(s) 298, 464
Bsp120I GGGCCC 1 cut(s) 296
Bsp1286I GDGCHC 2 cut(s) 232, 300
Bsp143I GATC 1 cut(s) 319
Bsp1720I GCTNAGC 1 cut(s) 231
BspACI CCGC 5 cut(s) 59, 180, 235, 247, 277
BspANI GGCC 2 cut(s) 298, 464
BspCNI CTCAG 3 cut(s) 226, 244, 355
BspLI GGNNCC 3 cut(s) 298, 299, 369
BspMI ACCTGC 1 cut(s) 418
BsrBI CCGCTC 1 cut(s) 180
BsrI ACTGG 1 cut(s) 86
BssECI CCNNGG 1 cut(s) 465
BssMI GATC 1 cut(s) 319
Bst2UI CCWGG 2 cut(s) 396, 466
Bst4CI ACNGT 2 cut(s) 95, 316
Bst6I CTCTTC 3 cut(s) 6, 11, 233
BstC8I GCNNGC 2 cut(s) 415, 462
BstDEI CTNAG 3 cut(s) 213, 231, 363
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 1 cut(s) 322
BstMAI GTCTC 2 cut(s) 13, 235
BstMBI GATC 1 cut(s) 319
BstMWI GCNNNNNNNGC 1 cut(s) 217
BstNI CCWGG 2 cut(s) 396, 466
BstSCI CCNGG 2 cut(s) 394, 464
BstSLI GKGCMC 1 cut(s) 300
BstV1I GCAGC 1 cut(s) 364
BstV2I GAAGAC 1 cut(s) 153
BsuRI GGCC 2 cut(s) 298, 464
BtrI CACGTC 1 cut(s) 112
BveI ACCTGC 1 cut(s) 418
Cac8I GCNNGC 2 cut(s) 415, 462
CfoI GCGC 1 cut(s) 6
Cfr13I GGNCC 2 cut(s) 296, 297
CseI GACGC 1 cut(s) 30
Csp6I GTAC 1 cut(s) 89
CviQI GTAC 1 cut(s) 89
DdeI CTNAG 3 cut(s) 213, 231, 363
DpnI GATC 1 cut(s) 321
DpnII GATC 1 cut(s) 319
EaeI YGGCCR 1 cut(s) 462
Eam1104I CTCTTC 3 cut(s) 6, 11, 233
EarI CTCTTC 3 cut(s) 6, 11, 233
Eco24I GRGCYC 2 cut(s) 232, 300
EcoO109I RGGNCCY 1 cut(s) 297
EcoRII CCWGG 2 cut(s) 394, 464
EcoT38I GRGCYC 2 cut(s) 232, 300
Esp3I CGTCTC 1 cut(s) 13
FauI CCCGC 2 cut(s) 66, 284
Fnu4HI GCNGC 1 cut(s) 378
FriOI GRGCYC 2 cut(s) 232, 300
Fsp4HI GCNGC 1 cut(s) 378
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 378
HaeIII GGCC 2 cut(s) 298, 464
HgaI GACGC 1 cut(s) 30
HhaI GCGC 1 cut(s) 6
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HinfI GANTC 1 cut(s) 243
HphI GGTGA 4 cut(s) 72, 194, 212, 338
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 3 cut(s) 216, 364, 426
Hpy188III TCNNGA 2 cut(s) 134, 388
Hpy8I GTNNAC 1 cut(s) 91
Hpy99I CGWCG 4 cut(s) 178, 320, 354, 389
HpyAV CCTTC 2 cut(s) 75, 442
HpyCH4III ACNGT 2 cut(s) 95, 316
HpyCH4IV ACGT 2 cut(s) 111, 352
HpyCH4V TGCA 2 cut(s) 170, 417
HpyF10VI GCNNNNNNNGC 1 cut(s) 217
HpyF3I CTNAG 3 cut(s) 213, 231, 363
HpySE526I ACGT 2 cut(s) 111, 352
HspAI GCGC 1 cut(s) 4
Kzo9I GATC 1 cut(s) 319
LpnPI CCDG 8 cut(s) 99, 381, 384, 408, 423, 446, 451, 478
Lsp1109I GCAGC 1 cut(s) 364
LweI GCATC 2 cut(s) 259, 364
MaeII ACGT 2 cut(s) 111, 352
MaeIII GTNAC 1 cut(s) 182
MalI GATC 1 cut(s) 321
MbiI CCGCTC 1 cut(s) 180
MboI GATC 1 cut(s) 319
MboII GAAGA 7 cut(s) 23, 28, 155, 158, 250, 265, 278
MhlI GDGCHC 2 cut(s) 232, 300
MlsI TGGCCA 1 cut(s) 464
MluNI TGGCCA 1 cut(s) 464
MlyI GAGTC 1 cut(s) 237
MmeI TCCRAC 1 cut(s) 335
Mox20I TGGCCA 1 cut(s) 464
MscI TGGCCA 1 cut(s) 464
Msp20I TGGCCA 1 cut(s) 464
MspA1I CMGCKG 1 cut(s) 235
MspR9I CCNGG 2 cut(s) 396, 466
MvaI CCWGG 2 cut(s) 396, 466
MwoI GCNNNNNNNGC 1 cut(s) 217
NdeII GATC 1 cut(s) 319
NlaIV GGNNCC 3 cut(s) 298, 299, 369
NmuCI GTSAC 1 cut(s) 182
NsbI TGCGCA 1 cut(s) 5
PaqCI CACCTGC 1 cut(s) 418
PkrI GCNGC 1 cut(s) 379
PleI GAGTC 1 cut(s) 237
PpsI GAGTC 1 cut(s) 237
Psp6I CCWGG 2 cut(s) 394, 464
PspGI CCWGG 2 cut(s) 394, 464
PspN4I GGNNCC 3 cut(s) 298, 299, 369
PspOMI GGGCCC 1 cut(s) 296
PspPI GGNCC 2 cut(s) 296, 297
RsaI GTAC 1 cut(s) 90
RsaNI GTAC 1 cut(s) 89
SatI GCNGC 1 cut(s) 378
Sau3AI GATC 1 cut(s) 319
Sau96I GGNCC 2 cut(s) 296, 297
SchI GAGTC 1 cut(s) 237
ScrFI CCNGG 2 cut(s) 396, 466
SduI GDGCHC 2 cut(s) 232, 300
SfaNI GCATC 2 cut(s) 259, 364
SmlI CTYRAG 2 cut(s) 260, 339
SmoI CTYRAG 2 cut(s) 260, 339
SsiI CCGC 5 cut(s) 59, 180, 235, 247, 277
StyD4I CCNGG 2 cut(s) 394, 464
TaaI ACNGT 2 cut(s) 95, 316
TaiI ACGT 2 cut(s) 114, 355
TaqI TCGA 3 cut(s) 318, 349, 387
TatI WGTACW 1 cut(s) 88
TseFI GTSAC 1 cut(s) 182
TseI GCWGC 1 cut(s) 377
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.