Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0012157

Physical Location & Seq

Genomic Coordinates Reverse (-)

72977374 .. 72977747

Gene Structure 374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00135380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGCGCCGAGAAGAGAAGCGACGCAAGTTCAATGAGGCTGTCCTCAACACGCTTTATCCTCCTCCTCCTCCTCCTCCATCACCACCACCCAAAGACGAGGACGTAGACTTGAACATTTTACGTCAAGACTTTGAACTAGAAAGTGGGTCTTCAGCTACTACCGGTGATGAGGATGGTAATGGCGAAAGTGAGATTCAGAAGCTTACGAGGGCCCAGCGGAAGAGACTCCGGCCCAACGGCCTATCTAGACAACGACCTAAGGTAGAAAACGACCCTGGCCCAACGGCCAAACCTGCCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

100

Amino Acids

11.29

Weight (kDa)

8.01

Isoelectric Point (pI)

79.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67640
fragaria_vesca	FvH4_1g17950
malus_domestica	MD15G1299000.v1.1
prunus_persica	Prupe.6G218900_v2.0.a1
pyrus_communis	pycom15g26160
rosa_chinensis	RchiOBHm_Chr2g0108411
rosa_laevigata	RLG00000017666
rosa_multiflora	Rmu_sc0002372.1_g000022 Rmu_sc0009208.1_g000006
rosa_roxburghii	Rroxscaffold_2G00135180 Rroxscaffold_2G00135380
rosa_rugosa	Rorug02G0152400 Rorug02G0152500
rosa_samantha	Rh2AG201600 Rh2BG214500 Rh2CG205800 Rh2DG208900
rosa_wichuraiana	Rw2G016040 Rw2G016100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	105
AciI	CCGC	1 cut(s)	217
AcoI	YGGCCR	1 cut(s)	285
AcuI	CTGAAG	1 cut(s)	135
AgeI	ACCGGT	1 cut(s)	161
AgsI	TTSAA	3 cut(s)	31, 112, 134
AjnI	CCWGG	1 cut(s)	274
AluBI	AGCT	2 cut(s)	155, 202
AluI	AGCT	2 cut(s)	155, 202
Alw26I	GTCTC	1 cut(s)	217
AoxI	GGCC	5 cut(s)	210, 230, 238, 277, 285
ApaI	GGGCCC	1 cut(s)	214
AsiGI	ACCGGT	1 cut(s)	161
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	4 cut(s)	210, 211, 231, 278
AsuHPI	GGTGA	2 cut(s)	72, 176
AxyI	CCTNAGG	1 cut(s)	258
BaeGI	GKGCMC	1 cut(s)	214
BanII	GRGCYC	1 cut(s)	214
BbsI	GAAGAC	1 cut(s)	141
BccI	CCATC	2 cut(s)	85, 167
BceAI	ACGGC	2 cut(s)	253, 300
BciT130I	CCWGG	1 cut(s)	276
BcoDI	GTCTC	1 cut(s)	217
BfaI	CTAG	2 cut(s)	137, 246
Bme1390I	CCNGG	1 cut(s)	276
BmgT120I	GGNCC	4 cut(s)	210, 211, 231, 278
BmiI	GGNNCC	1 cut(s)	212
BmrFI	CCNGG	1 cut(s)	276
BpiI	GAAGAC	1 cut(s)	141
BsaJI	CCNNGG	1 cut(s)	274
BsaWI	WCCGGW	1 cut(s)	161
Bse118I	RCCGGY	1 cut(s)	161
Bse21I	CCTNAGG	1 cut(s)	258
BseBI	CCWGG	1 cut(s)	276
BseDI	CCNNGG	1 cut(s)	274
BseGI	GGATG	1 cut(s)	178
BseRI	GAGGAG	5 cut(s)	51, 54, 57, 60, 63
BseSI	GKGCMC	1 cut(s)	214
BseYI	CCCAGC	1 cut(s)	213
BshFI	GGCC	5 cut(s)	212, 232, 240, 279, 287
BshTI	ACCGGT	1 cut(s)	161
BsiSI	CCGG	2 cut(s)	162, 229
BsmAI	GTCTC	1 cut(s)	217
BsnI	GGCC	5 cut(s)	212, 232, 240, 279, 287
Bsp120I	GGGCCC	1 cut(s)	210
Bsp1286I	GDGCHC	1 cut(s)	214
BspACI	CCGC	1 cut(s)	217
BspANI	GGCC	5 cut(s)	212, 232, 240, 279, 287
BspLI	GGNNCC	1 cut(s)	212
BsrFI	RCCGGY	1 cut(s)	161
BssAI	RCCGGY	1 cut(s)	161
BssECI	CCNNGG	1 cut(s)	274
Bst2UI	CCWGG	1 cut(s)	276
Bst6I	CTCTTC	2 cut(s)	6, 215
BstDEI	CTNAG	1 cut(s)	258
BstF5I	GGATG	1 cut(s)	178
BstHHI	GCGC	1 cut(s)	6
BstMAI	GTCTC	1 cut(s)	217
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstNI	CCWGG	1 cut(s)	276
BstSCI	CCNGG	1 cut(s)	274
BstSLI	GKGCMC	1 cut(s)	214
BstV2I	GAAGAC	1 cut(s)	141
Bsu36I	CCTNAGG	1 cut(s)	258
BsuRI	GGCC	5 cut(s)	212, 232, 240, 279, 287
BtsCI	GGATG	1 cut(s)	178
CfoI	GCGC	1 cut(s)	6
Cfr10I	RCCGGY	1 cut(s)	161
Cfr13I	GGNCC	4 cut(s)	210, 211, 231, 278
CseI	GACGC	1 cut(s)	30
CspAI	ACCGGT	1 cut(s)	161
CviJI	RGCY	8 cut(s)	38, 155, 202, 212, 232, 240, 279, 287
CviKI_1	RGCY	8 cut(s)	38, 155, 202, 212, 232, 240, 279, 287
DdeI	CTNAG	1 cut(s)	258
EaeI	YGGCCR	1 cut(s)	285
Eam1104I	CTCTTC	2 cut(s)	6, 215
EarI	CTCTTC	2 cut(s)	6, 215
Eco24I	GRGCYC	1 cut(s)	214
Eco57I	CTGAAG	1 cut(s)	135
Eco81I	CCTNAGG	1 cut(s)	258
EcoO109I	RGGNCCY	1 cut(s)	210
EcoRII	CCWGG	1 cut(s)	274
EcoT38I	GRGCYC	1 cut(s)	214
FalI	AAGNNNNNCTT	2 cut(s)	133, 165
FblI	GTMKAC	1 cut(s)	105
FokI	GGATG	1 cut(s)	185
FriOI	GRGCYC	1 cut(s)	214
FspBI	CTAG	2 cut(s)	137, 246
GlaI	GCGC	1 cut(s)	5
GsaI	CCCAGC	1 cut(s)	217
HaeIII	GGCC	5 cut(s)	212, 232, 240, 279, 287
HapII	CCGG	2 cut(s)	162, 229
HgaI	GACGC	1 cut(s)	30
HhaI	GCGC	1 cut(s)	6
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HindIII	AAGCTT	1 cut(s)	200
HinfI	GANTC	2 cut(s)	193, 225
HpaII	CCGG	2 cut(s)	162, 229
HphI	GGTGA	2 cut(s)	72, 176
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	1 cut(s)	198
Hpy188III	TCNNGA	2 cut(s)	125, 246
Hpy8I	GTNNAC	1 cut(s)	106
Hpy99I	CGWCG	1 cut(s)	24
HpyCH4IV	ACGT	2 cut(s)	102, 121
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
HpyF3I	CTNAG	1 cut(s)	258
HpySE526I	ACGT	2 cut(s)	102, 121
HspAI	GCGC	1 cut(s)	4
LpnPI	CCDG	5 cut(s)	175, 227, 242, 261, 288
MaeI	CTAG	2 cut(s)	137, 246
MaeII	ACGT	2 cut(s)	102, 121
MboII	GAAGA	3 cut(s)	23, 141, 232
MhlI	GDGCHC	1 cut(s)	214
MlyI	GAGTC	1 cut(s)	219
MspA1I	CMGCKG	1 cut(s)	217
MspI	CCGG	2 cut(s)	162, 229
MspR9I	CCNGG	1 cut(s)	276
MvaI	CCWGG	1 cut(s)	276
MwoI	GCNNNNNNNGC	1 cut(s)	293
NlaIV	GGNNCC	1 cut(s)	212
NmeAIII	GCCGAG	1 cut(s)	32
PfeI	GAWTC	1 cut(s)	193
PinAI	ACCGGT	1 cut(s)	161
PleI	GAGTC	1 cut(s)	219
PpsI	GAGTC	1 cut(s)	219
Psp6I	CCWGG	1 cut(s)	274
PspFI	CCCAGC	1 cut(s)	213
PspGI	CCWGG	1 cut(s)	274
PspN4I	GGNNCC	1 cut(s)	212
PspOMI	GGGCCC	1 cut(s)	210
PspPI	GGNCC	4 cut(s)	210, 211, 231, 278
Sau96I	GGNCC	4 cut(s)	210, 211, 231, 278
SchI	GAGTC	1 cut(s)	219
ScrFI	CCNGG	1 cut(s)	276
SduI	GDGCHC	1 cut(s)	214
SetI	ASST	7 cut(s)	105, 124, 157, 204, 259, 264, 295
SsiI	CCGC	1 cut(s)	217
SspMI	CTAG	2 cut(s)	137, 246
StyD4I	CCNGG	1 cut(s)	274
TaiI	ACGT	2 cut(s)	105, 124
TfiI	GAWTC	1 cut(s)	193
XbaI	TCTAGA	1 cut(s)	245
XmiI	GTMKAC	1 cut(s)	105
XspI	CTAG	2 cut(s)	137, 246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.