Rh2BG214500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0012157
Physical Location & Seq
Reverse (-)
20380090 .. 20381279
1190 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG214500.1

Sequence Viewer

Length: 462 bp
ATGCGCCGAGAAGAGAAGCGACGCAAGTTCAATGAGGCTGTCCTCAACACGCTTTATCCTCCTCCTTCTCCTCCATCACCACCACCCAAAGATGAGGACGTAGACTTGAACATTTTACGTCAAGACTTTGAACTAGAAAGTGGGTCTTCAGCTACTAGCGGTGATGAGGATGATGGCAAAAGTGAGATTCAGAAGCTTACGAGGGCGCAGCGGAAGAGACTCCGGAAGAAGAAGCTTAAGAAAGACGCTTCTCGACGCAGGCAAATCATAGGGCCTCTTTTGCCGTCGACAGTCGGTGAAGGTGAAAATTGCACTCCACGTGTTCGACGAAATGCCTCTGAGGAACCAAAATGCATTTGTGTAGGTGATCAGCCACCTCAATCTGGTTGCAGTAATCAGAAGAACAAGGTGAAGCAGAGGAGGAAGGCGAAGAAGCTAGCCAAGGAAAGAGAGCAACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

17.47

Weight (kDa)

9.94

Isoelectric Point (pI)

84.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012157)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G67640
fragaria_vesca FvH4_1g17950
malus_domestica MD15G1299000.v1.1
prunus_persica Prupe.6G218900_v2.0.a1
pyrus_communis pycom15g26160
rosa_chinensis RchiOBHm_Chr2g0108411
rosa_laevigata RLG00000017666
rosa_multiflora Rmu_sc0002372.1_g000022 Rmu_sc0009208.1_g000006
rosa_roxburghii Rroxscaffold_2G00135180 Rroxscaffold_2G00135380
rosa_rugosa Rorug02G0152400 Rorug02G0152500
rosa_samantha Rh2AG201600 Rh2BG214500 Rh2CG205800 Rh2DG208900
rosa_wichuraiana Rw2G016040 Rw2G016100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 102, 287
AccIII TCCGGA 1 cut(s) 222
AciI CCGC 2 cut(s) 159, 211
AcuI CTGAAG 1 cut(s) 132
AcvI CACGTG 1 cut(s) 320
AfiI CCNNNNNNNGG 1 cut(s) 383
AflII CTTAAG 1 cut(s) 236
AflIII ACRYGT 1 cut(s) 319
AgsI TTSAA 3 cut(s) 31, 109, 131
AluBI AGCT 4 cut(s) 152, 196, 235, 436
AluI AGCT 4 cut(s) 152, 196, 235, 436
Alw26I GTCTC 1 cut(s) 211
Aor13HI TCCGGA 1 cut(s) 222
AoxI GGCC 1 cut(s) 272
ApeKI GCWGC 1 cut(s) 208
AspLEI GCGC 2 cut(s) 6, 208
AspS9I GGNCC 1 cut(s) 272
AsuHPI GGTGA 6 cut(s) 69, 173, 308, 314, 377, 421
AsuNHI GCTAGC 1 cut(s) 436
BbrPI CACGTG 1 cut(s) 320
BbsI GAAGAC 1 cut(s) 138
BbvI GCAGC 1 cut(s) 220
BccI CCATC 2 cut(s) 82, 167
BceAI ACGGC 1 cut(s) 268
BclI TGATCA 1 cut(s) 367
BcoDI GTCTC 1 cut(s) 211
BfaI CTAG 3 cut(s) 134, 156, 437
BfrI CTTAAG 1 cut(s) 236
BisI GCNGC 1 cut(s) 209
BlsI GCNGC 1 cut(s) 210
BmgT120I GGNCC 1 cut(s) 272
BmiI GGNNCC 1 cut(s) 345
BmtI GCTAGC 1 cut(s) 440
BpiI GAAGAC 1 cut(s) 138
BsaAI YACGTR 1 cut(s) 320
BsaJI CCNNGG 1 cut(s) 441
BsaWI WCCGGW 1 cut(s) 222
Bsc4I CCNNNNNNNGG 1 cut(s) 383
BseAI TCCGGA 1 cut(s) 222
BseDI CCNNGG 1 cut(s) 441
BseGI GGATG 1 cut(s) 175
BseLI CCNNNNNNNGG 1 cut(s) 383
BseMII CTCAG 1 cut(s) 330
BseRI GAGGAG 3 cut(s) 51, 60, 433
BseXI GCAGC 1 cut(s) 220
BshFI GGCC 1 cut(s) 274
BsiSI CCGG 1 cut(s) 223
BslI CCNNNNNNNGG 1 cut(s) 383
BsmAI GTCTC 1 cut(s) 211
BsnI GGCC 1 cut(s) 274
Bsp13I TCCGGA 1 cut(s) 222
Bsp143I GATC 1 cut(s) 367
BspACI CCGC 2 cut(s) 159, 211
BspANI GGCC 1 cut(s) 274
BspCNI CTCAG 1 cut(s) 331
BspEI TCCGGA 1 cut(s) 222
BspLI GGNNCC 1 cut(s) 345
BspOI GCTAGC 1 cut(s) 440
BspTI CTTAAG 1 cut(s) 236
BssECI CCNNGG 1 cut(s) 441
BssMI GATC 1 cut(s) 367
BssT1I CCWWGG 1 cut(s) 441
Bst4CI ACNGT 1 cut(s) 292
Bst6I CTCTTC 2 cut(s) 6, 209
BstAFI CTTAAG 1 cut(s) 236
BstBAI YACGTR 1 cut(s) 320
BstC8I GCNNGC 2 cut(s) 260, 438
BstDEI CTNAG 1 cut(s) 339
BstF5I GGATG 1 cut(s) 175
BstHHI GCGC 2 cut(s) 6, 208
BstKTI GATC 1 cut(s) 370
BstMAI GTCTC 1 cut(s) 211
BstMBI GATC 1 cut(s) 367
BstMWI GCNNNNNNNGC 1 cut(s) 280
BstV1I GCAGC 1 cut(s) 220
BstV2I GAAGAC 1 cut(s) 138
BsuRI GGCC 1 cut(s) 274
BtsCI GGATG 1 cut(s) 175
Cac8I GCNNGC 2 cut(s) 260, 438
CfoI GCGC 2 cut(s) 6, 208
Cfr13I GGNCC 1 cut(s) 272
CseI GACGC 3 cut(s) 30, 254, 264
CviJI RGCY 8 cut(s) 38, 152, 196, 235, 274, 373, 436, 440
CviKI_1 RGCY 8 cut(s) 38, 152, 196, 235, 274, 373, 436, 440
DdeI CTNAG 1 cut(s) 339
DpnI GATC 1 cut(s) 369
DpnII GATC 1 cut(s) 367
Eam1104I CTCTTC 2 cut(s) 6, 209
EarI CTCTTC 2 cut(s) 6, 209
Eco130I CCWWGG 1 cut(s) 441
Eco57I CTGAAG 1 cut(s) 132
Eco72I CACGTG 1 cut(s) 320
EcoO109I RGGNCCY 1 cut(s) 272
EcoT14I CCWWGG 1 cut(s) 441
EcoT22I ATGCAT 1 cut(s) 356
ErhI CCWWGG 1 cut(s) 441
FaiI YATR 1 cut(s) 269
FalI AAGNNNNNCTT 2 cut(s) 130, 162
FbaI TGATCA 1 cut(s) 367
FblI GTMKAC 2 cut(s) 102, 287
Fnu4HI GCNGC 1 cut(s) 209
FokI GGATG 1 cut(s) 182
Fsp4HI GCNGC 1 cut(s) 209
FspBI CTAG 3 cut(s) 134, 156, 437
GlaI GCGC 2 cut(s) 5, 207
GluI GCNGC 1 cut(s) 209
HaeIII GGCC 1 cut(s) 274
HapII CCGG 1 cut(s) 223
HgaI GACGC 3 cut(s) 30, 254, 264
HhaI GCGC 2 cut(s) 6, 208
Hin6I GCGC 2 cut(s) 4, 206
HinP1I GCGC 2 cut(s) 4, 206
HincII GTYRAC 1 cut(s) 288
HindII GTYRAC 1 cut(s) 288
HindIII AAGCTT 2 cut(s) 194, 233
HinfI GANTC 2 cut(s) 187, 219
HpaII CCGG 1 cut(s) 223
HphI GGTGA 6 cut(s) 69, 173, 308, 314, 377, 421
Hpy166II GTNNAC 2 cut(s) 103, 288
Hpy188I TCNGA 3 cut(s) 192, 340, 399
Hpy188III TCNNGA 3 cut(s) 122, 223, 252
Hpy8I GTNNAC 2 cut(s) 103, 288
Hpy99I CGWCG 4 cut(s) 24, 258, 289, 330
HpyAV CCTTC 3 cut(s) 75, 293, 418
HpyCH4III ACNGT 1 cut(s) 292
HpyCH4IV ACGT 3 cut(s) 99, 118, 319
HpyCH4V TGCA 3 cut(s) 312, 354, 390
HpyF10VI GCNNNNNNNGC 1 cut(s) 280
HpyF3I CTNAG 1 cut(s) 339
HpySE526I ACGT 3 cut(s) 99, 118, 319
HspAI GCGC 2 cut(s) 4, 206
Kpn2I TCCGGA 1 cut(s) 222
Ksp22I TGATCA 1 cut(s) 367
Kzo9I GATC 1 cut(s) 367
LpnPI CCDG 3 cut(s) 236, 244, 369
Lsp1109I GCAGC 1 cut(s) 220
MaeI CTAG 3 cut(s) 134, 156, 437
MaeII ACGT 3 cut(s) 99, 118, 319
MalI GATC 1 cut(s) 369
MboI GATC 1 cut(s) 367
MboII GAAGA 7 cut(s) 23, 138, 226, 238, 241, 412, 442
MluCI AATT 1 cut(s) 307
MlyI GAGTC 1 cut(s) 213
Mph1103I ATGCAT 1 cut(s) 356
MroI TCCGGA 1 cut(s) 222
MseI TTAA 1 cut(s) 237
MspA1I CMGCKG 1 cut(s) 211
MspCI CTTAAG 1 cut(s) 236
MspI CCGG 1 cut(s) 223
MwoI GCNNNNNNNGC 1 cut(s) 280
NdeII GATC 1 cut(s) 367
NheI GCTAGC 1 cut(s) 436
NlaIV GGNNCC 1 cut(s) 345
NmeAIII GCCGAG 1 cut(s) 32
NsiI ATGCAT 1 cut(s) 356
PcsI WCGNNNNNNNCGW 1 cut(s) 325
PfeI GAWTC 1 cut(s) 187
PkrI GCNGC 1 cut(s) 210
PleI GAGTC 1 cut(s) 213
PmaCI CACGTG 1 cut(s) 320
PmlI CACGTG 1 cut(s) 320
PpsI GAGTC 1 cut(s) 213
Ppu21I YACGTR 1 cut(s) 320
PspCI CACGTG 1 cut(s) 320
PspN4I GGNNCC 1 cut(s) 345
PspPI GGNCC 1 cut(s) 272
SalI GTCGAC 1 cut(s) 286
SaqAI TTAA 1 cut(s) 237
SatI GCNGC 1 cut(s) 209
Sau3AI GATC 1 cut(s) 367
Sau96I GGNCC 1 cut(s) 272
SchI GAGTC 1 cut(s) 213
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
Sse9I AATT 1 cut(s) 307
SsiI CCGC 2 cut(s) 159, 211
SspMI CTAG 3 cut(s) 134, 156, 437
StyI CCWWGG 1 cut(s) 441
TaaI ACNGT 1 cut(s) 292
TaiI ACGT 3 cut(s) 102, 121, 322
TaqI TCGA 3 cut(s) 253, 287, 325
TasI AATT 1 cut(s) 307
TfiI GAWTC 1 cut(s) 187
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TseI GCWGC 1 cut(s) 208
Vha464I CTTAAG 1 cut(s) 236
XmiI GTMKAC 2 cut(s) 102, 287
XspI CTAG 3 cut(s) 134, 156, 437
Zsp2I ATGCAT 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.