Rorug02G0152500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0012157
Physical Location & Seq
Forward (+)
13495117 .. 13498584
3468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0152500.1

Sequence Viewer

Length: 492 bp
ATGTGTAAGCCCTCAAAGAGTACCACTCCTGCTTCAGACACCGCTGATGTGCATACTGATACCTATGGTCAAGCTGCGTCAAATTTAGTTGCTGGAACTAATCTTGAGCAGACTATTCAACAGATAATGGATATGGGTGGTGGAAATTGGGACAGAGAAACAGTTACACGTGCACTTCGAGCGGCTTTTAACAACCCAGATGTTGTTCAGAGTATTCCAAAAACAGAGAAAGTTGCAGTGCCTGTGGCTCATTTCCCTGCAAGTCAGGCAACCGAAACAGGCATAGCCAATGCTCCACCTATCTCCGGAGCACCTAATTCAGGTCCCCTGAATATGTTTCCGCAGGAAGCACTGTCCGGTGCTGGTGCTGGTGCACTTGGATCCCTCAACTTCCTTACAAACAATCATCAGCATTCTGCTTTTGTTACAGCCCATGCTGCAGGAACTTGGAAAGCAAAACCCACAGCTTTTAAGATTAATTCAGGAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

16.83

Weight (kDa)

6.49

Isoelectric Point (pI)

16.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UBA PF00627 36 - 67 1.2e-07 UBA/TS-N domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012157)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G67640
fragaria_vesca FvH4_1g17950
malus_domestica MD15G1299000.v1.1
prunus_persica Prupe.6G218900_v2.0.a1
pyrus_communis pycom15g26160
rosa_chinensis RchiOBHm_Chr2g0108411
rosa_laevigata RLG00000017666
rosa_multiflora Rmu_sc0002372.1_g000022 Rmu_sc0009208.1_g000006
rosa_roxburghii Rroxscaffold_2G00135180 Rroxscaffold_2G00135380
rosa_rugosa Rorug02G0152400 Rorug02G0152500
rosa_samantha Rh2AG201600 Rh2BG214500 Rh2CG205800 Rh2DG208900
rosa_wichuraiana Rw2G016040 Rw2G016100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 182
AccIII TCCGGA 1 cut(s) 305
AciI CCGC 3 cut(s) 42, 182, 341
AclWI GGATC 2 cut(s) 375, 388
AcsI RAATTY 1 cut(s) 82
AcuI CTGAAG 1 cut(s) 18
AcvI CACGTG 1 cut(s) 170
AfaI GTAC 1 cut(s) 22
AfiI CCNNNNNNNGG 2 cut(s) 305, 320
AflIII ACRYGT 1 cut(s) 167
AgsI TTSAA 1 cut(s) 119
AluBI AGCT 2 cut(s) 74, 467
AluI AGCT 2 cut(s) 74, 467
Alw21I GWGCWC 3 cut(s) 175, 313, 376
Alw44I GTGCAC 2 cut(s) 171, 372
AlwI GGATC 2 cut(s) 375, 388
AlwNI CAGNNNCTG 1 cut(s) 242
Aor13HI TCCGGA 1 cut(s) 305
ApaLI GTGCAC 2 cut(s) 171, 372
ApeKI GCWGC 2 cut(s) 74, 437
ApoI RAATTY 1 cut(s) 82
AseI ATTAAT 1 cut(s) 477
AspS9I GGNCC 1 cut(s) 323
AvaII GGWCC 1 cut(s) 323
BaeGI GKGCMC 2 cut(s) 175, 376
BamHI GGATCC 1 cut(s) 380
BbrPI CACGTG 1 cut(s) 170
Bbv12I GWGCWC 3 cut(s) 175, 313, 376
BbvI GCAGC 2 cut(s) 61, 424
BfmI CTRYAG 1 cut(s) 438
BisI GCNGC 3 cut(s) 75, 183, 438
BlsI GCNGC 3 cut(s) 76, 184, 439
Bme18I GGWCC 1 cut(s) 323
BmgT120I GGNCC 1 cut(s) 323
BmiI GGNNCC 2 cut(s) 325, 382
BplI GAGNNNNNCTC 2 cut(s) 10, 42
BpuEI CTTGAG 1 cut(s) 125
BsaAI YACGTR 1 cut(s) 170
BsaWI WCCGGW 2 cut(s) 305, 356
Bsc4I CCNNNNNNNGG 2 cut(s) 305, 320
BseAI TCCGGA 1 cut(s) 305
BseLI CCNNNNNNNGG 2 cut(s) 305, 320
BseSI GKGCMC 2 cut(s) 175, 376
BseXI GCAGC 2 cut(s) 61, 424
BsiHKAI GWGCWC 3 cut(s) 175, 313, 376
BsiSI CCGG 2 cut(s) 306, 357
BslFI GGGAC 2 cut(s) 164, 309
BslI CCNNNNNNNGG 2 cut(s) 305, 320
BsmFI GGGAC 2 cut(s) 164, 309
BsmI GAATGC 1 cut(s) 412
Bsp1286I GDGCHC 3 cut(s) 175, 313, 376
Bsp13I TCCGGA 1 cut(s) 305
Bsp143I GATC 1 cut(s) 380
BspACI CCGC 3 cut(s) 42, 182, 341
BspEI TCCGGA 1 cut(s) 305
BspLI GGNNCC 2 cut(s) 325, 382
BspMAI CTGCAG 1 cut(s) 442
BspPI GGATC 2 cut(s) 375, 388
BsrBI CCGCTC 1 cut(s) 182
BssMI GATC 1 cut(s) 380
Bst4CI ACNGT 2 cut(s) 163, 354
BstBAI YACGTR 1 cut(s) 170
BstENI CCTNNNNNAGG 1 cut(s) 318
BstKTI GATC 1 cut(s) 383
BstMBI GATC 1 cut(s) 380
BstMWI GCNNNNNNNGC 3 cut(s) 179, 266, 437
BstSFI CTRYAG 1 cut(s) 438
BstSLI GKGCMC 2 cut(s) 175, 376
BstV1I GCAGC 2 cut(s) 61, 424
BstX2I RGATCY 1 cut(s) 380
BstYI RGATCY 1 cut(s) 380
BtsI GCAGTG 1 cut(s) 243
BtsIMutI CAGTG 2 cut(s) 243, 350
CaiI CAGNNNCTG 1 cut(s) 242
Cfr13I GGNCC 1 cut(s) 323
CseI GACGC 1 cut(s) 66
Csp6I GTAC 1 cut(s) 21
CviAII CATG 1 cut(s) 434
CviJI RGCY 7 cut(s) 10, 74, 185, 248, 287, 431, 467
CviKI_1 RGCY 7 cut(s) 10, 74, 185, 248, 287, 431, 467
CviQI GTAC 1 cut(s) 21
DpnI GATC 1 cut(s) 382
DpnII GATC 1 cut(s) 380
Eco47I GGWCC 1 cut(s) 323
Eco57I CTGAAG 1 cut(s) 18
Eco72I CACGTG 1 cut(s) 170
EcoNI CCTNNNNNAGG 1 cut(s) 318
EcoO109I RGGNCCY 1 cut(s) 323
FaeI CATG 1 cut(s) 437
FaiI YATR 6 cut(s) 54, 66, 134, 284, 335, 435
FaqI GGGAC 2 cut(s) 164, 309
FatI CATG 1 cut(s) 433
Fnu4HI GCNGC 3 cut(s) 75, 183, 438
Fsp4HI GCNGC 3 cut(s) 75, 183, 438
GluI GCNGC 3 cut(s) 75, 183, 438
HapII CCGG 2 cut(s) 306, 357
HgaI GACGC 1 cut(s) 66
Hin1II CATG 1 cut(s) 437
HpaII CCGG 2 cut(s) 306, 357
Hpy166II GTNNAC 2 cut(s) 173, 374
Hpy188I TCNGA 2 cut(s) 37, 210
Hpy188III TCNNGA 3 cut(s) 104, 306, 483
Hpy8I GTNNAC 2 cut(s) 173, 374
HpyCH4III ACNGT 2 cut(s) 163, 354
HpyCH4IV ACGT 1 cut(s) 169
HpyCH4V TGCA 6 cut(s) 52, 173, 236, 260, 374, 440
HpyF10VI GCNNNNNNNGC 3 cut(s) 179, 266, 437
HpySE526I ACGT 1 cut(s) 169
Hsp92II CATG 1 cut(s) 437
Kpn2I TCCGGA 1 cut(s) 305
Kzo9I GATC 1 cut(s) 380
LmnI GCTCC 2 cut(s) 298, 308
Lsp1109I GCAGC 2 cut(s) 61, 424
MaeII ACGT 1 cut(s) 169
MaeIII GTNAC 2 cut(s) 163, 424
MalI GATC 1 cut(s) 382
MbiI CCGCTC 1 cut(s) 182
MboI GATC 1 cut(s) 380
MflI RGATCY 1 cut(s) 380
MhlI GDGCHC 3 cut(s) 175, 313, 376
MluCI AATT 4 cut(s) 82, 145, 316, 478
MnlI CCTC 2 cut(s) 22, 395
MroI TCCGGA 1 cut(s) 305
MseI TTAA 3 cut(s) 189, 471, 477
MspA1I CMGCKG 1 cut(s) 44
MspI CCGG 2 cut(s) 306, 357
Mva1269I GAATGC 1 cut(s) 412
MwoI GCNNNNNNNGC 3 cut(s) 179, 266, 437
NdeII GATC 1 cut(s) 380
NlaIII CATG 1 cut(s) 437
NlaIV GGNNCC 2 cut(s) 325, 382
PcsI WCGNNNNNNNCGW 1 cut(s) 175
PctI GAATGC 1 cut(s) 412
PkrI GCNGC 3 cut(s) 76, 184, 439
PmaCI CACGTG 1 cut(s) 170
PmlI CACGTG 1 cut(s) 170
Ppu21I YACGTR 1 cut(s) 170
PpuMI RGGWCCY 1 cut(s) 323
PshBI ATTAAT 1 cut(s) 477
Psp5II RGGWCCY 1 cut(s) 323
PspCI CACGTG 1 cut(s) 170
PspN4I GGNNCC 2 cut(s) 325, 382
PspPI GGNCC 1 cut(s) 323
PspPPI RGGWCCY 1 cut(s) 323
PstI CTGCAG 1 cut(s) 442
PstNI CAGNNNCTG 1 cut(s) 242
PsuI RGATCY 1 cut(s) 380
RsaI GTAC 1 cut(s) 22
RsaNI GTAC 1 cut(s) 21
SaqAI TTAA 3 cut(s) 189, 471, 477
SatI GCNGC 3 cut(s) 75, 183, 438
Sau3AI GATC 1 cut(s) 380
Sau96I GGNCC 1 cut(s) 323
SduI GDGCHC 3 cut(s) 175, 313, 376
SetI ASST 7 cut(s) 65, 76, 172, 301, 316, 325, 469
SfcI CTRYAG 1 cut(s) 438
SinI GGWCC 1 cut(s) 323
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
Sse9I AATT 4 cut(s) 82, 145, 316, 478
SsiI CCGC 3 cut(s) 42, 182, 341
TaaI ACNGT 2 cut(s) 163, 354
TaiI ACGT 1 cut(s) 172
TaqI TCGA 1 cut(s) 178
TasI AATT 4 cut(s) 82, 145, 316, 478
TauI GCSGC 1 cut(s) 185
Tru1I TTAA 3 cut(s) 189, 471, 477
Tru9I TTAA 3 cut(s) 189, 471, 477
TscAI CASTG 2 cut(s) 243, 357
TseI GCWGC 2 cut(s) 74, 437
TspRI CASTG 2 cut(s) 243, 357
VneI GTGCAC 2 cut(s) 171, 372
VpaK11BI GGWCC 1 cut(s) 323
VspI ATTAAT 1 cut(s) 477
XagI CCTNNNNNAGG 1 cut(s) 318
XapI RAATTY 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.