FvH4_1g00750

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0015512
Physical Location & Seq
Forward (+)
385630 .. 386375
746 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g00750.t1

Sequence Viewer

Length: 387 bp
ATGAGAAGAGAAATACTACCATGGTTTTCGACCCTCGTCTTTCTGTGCCTGCTTGCTCTATCTGCATGCGAAAGCACTTCTGTAGTACCTAAAGCTGTTGATCATGGACCTCAGAAGAAAGAGAAGCAACTTAAGGATGCGTATAATATAATGACCAAATCAAGTCGAAAAGAAGGCAATCAAAGAACATATGGGAAAATGCATGCAGTTCATCACTTGAAGGTTTCCCAGAAAACAAAGGGAACACAGGGTGGTGCCTCGGACCTTAACCGTCCAAAAACCAGTTATAGTGCAGCATCCTCTTTCCTGGGTAAACCACCCACTTCATTATTCTCAGCGGTATTCAGGCGTGTTACTATCGGATGGTTCATATTTGCTCTATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.31

Weight (kDa)

10.16

Isoelectric Point (pI)

44.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g00750
malus_domestica MD02G1006100.v1.1 MD15G1150800.v1.1 MD15G1150900.v1.1
prunus_persica Prupe.7G264800_v2.0.a1
pyrus_communis pycom15g13520
rosa_chinensis RchiOBHm_Chr2g0085471
rosa_laevigata RLG00000015693
rosa_multiflora Rmu_sc0007908.1_g000010
rosa_roxburghii Rroxscaffold_2G00155360
rosa_rugosa Rorug01G0460600
rosa_samantha Rh2AG009100 Rh2BG010200 Rh2CG010700 Rh2DG011400
rosa_wichuraiana Rw2G000850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 254
AciI CCGC 1 cut(s) 338
AdeI CACNNNGTG 1 cut(s) 251
AfaI GTAC 1 cut(s) 87
AflII CTTAAG 1 cut(s) 131
AgsI TTSAA 1 cut(s) 220
AjnI CCWGG 1 cut(s) 306
AluBI AGCT 1 cut(s) 95
AluI AGCT 1 cut(s) 95
ApeKI GCWGC 1 cut(s) 293
AspS9I GGNCC 2 cut(s) 107, 262
AvaII GGWCC 2 cut(s) 107, 262
BanI GGYRCC 1 cut(s) 254
BbvI GCAGC 1 cut(s) 305
BccI CCATC 1 cut(s) 357
BciT130I CCWGG 1 cut(s) 308
BclI TGATCA 1 cut(s) 100
BfmI CTRYAG 1 cut(s) 81
BfrI CTTAAG 1 cut(s) 131
BisI GCNGC 1 cut(s) 294
BlsI GCNGC 1 cut(s) 295
Bme1390I CCNGG 1 cut(s) 308
Bme18I GGWCC 2 cut(s) 107, 262
BmgT120I GGNCC 2 cut(s) 107, 262
BmiI GGNNCC 1 cut(s) 256
BmrFI CCNGG 1 cut(s) 308
BmsI GCATC 2 cut(s) 127, 305
BoxI GACNNNNGTC 1 cut(s) 35
BsaJI CCNNGG 3 cut(s) 20, 258, 307
Bse1I ACTGG 1 cut(s) 282
BseBI CCWGG 1 cut(s) 308
BseDI CCNNGG 3 cut(s) 20, 258, 307
BseGI GGATG 3 cut(s) 142, 296, 368
BseMII CTCAG 2 cut(s) 125, 348
BseNI ACTGG 1 cut(s) 282
BseXI GCAGC 1 cut(s) 305
BsgI GTGCAG 1 cut(s) 312
BshNI GGYRCC 1 cut(s) 254
Bsp143I GATC 1 cut(s) 100
Bsp19I CCATGG 1 cut(s) 20
BspACI CCGC 1 cut(s) 338
BspCNI CTCAG 2 cut(s) 124, 347
BspLI GGNNCC 1 cut(s) 256
BspT107I GGYRCC 1 cut(s) 254
BspTI CTTAAG 1 cut(s) 131
BsrI ACTGG 1 cut(s) 282
BssECI CCNNGG 3 cut(s) 20, 258, 307
BssMI GATC 1 cut(s) 100
BssT1I CCWWGG 1 cut(s) 20
Bst2UI CCWGG 1 cut(s) 308
Bst4CI ACNGT 1 cut(s) 272
BstAFI CTTAAG 1 cut(s) 131
BstC8I GCNNGC 4 cut(s) 50, 54, 67, 204
BstDEI CTNAG 2 cut(s) 111, 334
BstDSI CCRYGG 1 cut(s) 20
BstF5I GGATG 3 cut(s) 142, 296, 368
BstKTI GATC 1 cut(s) 103
BstMBI GATC 1 cut(s) 100
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstNI CCWGG 1 cut(s) 308
BstNSI RCATGY 2 cut(s) 69, 206
BstPAI GACNNNNGTC 1 cut(s) 35
BstSCI CCNGG 1 cut(s) 306
BstSFI CTRYAG 1 cut(s) 81
BstV1I GCAGC 1 cut(s) 305
BtgI CCRYGG 1 cut(s) 20
BtsCI GGATG 3 cut(s) 142, 296, 368
Cac8I GCNNGC 4 cut(s) 50, 54, 67, 204
Cfr13I GGNCC 2 cut(s) 107, 262
Csp6I GTAC 1 cut(s) 86
CviAII CATG 4 cut(s) 21, 66, 104, 203
CviJI RGCY 1 cut(s) 95
CviKI_1 RGCY 1 cut(s) 95
CviQI GTAC 1 cut(s) 86
DdeI CTNAG 2 cut(s) 111, 334
DpnI GATC 1 cut(s) 102
DpnII GATC 1 cut(s) 100
DraIII CACNNNGTG 1 cut(s) 251
Eco130I CCWWGG 1 cut(s) 20
Eco47I GGWCC 2 cut(s) 107, 262
EcoRII CCWGG 1 cut(s) 306
EcoT14I CCWWGG 1 cut(s) 20
EcoT22I ATGCAT 1 cut(s) 204
ErhI CCWWGG 1 cut(s) 20
FaeI CATG 4 cut(s) 24, 69, 107, 206
FatI CATG 4 cut(s) 20, 65, 103, 202
FauNDI CATATG 1 cut(s) 190
FbaI TGATCA 1 cut(s) 100
Fnu4HI GCNGC 1 cut(s) 294
FokI GGATG 3 cut(s) 149, 283, 375
Fsp4HI GCNGC 1 cut(s) 294
GluI GCNGC 1 cut(s) 294
Hin1II CATG 4 cut(s) 24, 69, 107, 206
Hpy166II GTNNAC 1 cut(s) 314
Hpy188I TCNGA 3 cut(s) 114, 262, 362
Hpy8I GTNNAC 1 cut(s) 314
HpyAV CCTTC 2 cut(s) 167, 214
HpyCH4III ACNGT 1 cut(s) 272
HpyCH4V TGCA 4 cut(s) 65, 202, 206, 293
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
HpyF3I CTNAG 2 cut(s) 111, 334
Hsp92II CATG 4 cut(s) 24, 69, 107, 206
Ksp22I TGATCA 1 cut(s) 100
Kzo9I GATC 1 cut(s) 100
LpnPI CCDG 7 cut(s) 62, 233, 242, 293, 295, 320, 331
Lsp1109I GCAGC 1 cut(s) 305
LweI GCATC 2 cut(s) 127, 305
MaeIII GTNAC 1 cut(s) 352
MalI GATC 1 cut(s) 102
MboI GATC 1 cut(s) 100
MboII GAAGA 2 cut(s) 18, 127
MnlI CCTC 4 cut(s) 44, 120, 268, 310
Mph1103I ATGCAT 1 cut(s) 204
MseI TTAA 2 cut(s) 132, 267
MspA1I CMGCKG 1 cut(s) 338
MspCI CTTAAG 1 cut(s) 131
MspR9I CCNGG 1 cut(s) 308
MvaI CCWGG 1 cut(s) 308
MwoI GCNNNNNNNGC 1 cut(s) 62
NcoI CCATGG 1 cut(s) 20
NdeI CATATG 1 cut(s) 190
NdeII GATC 1 cut(s) 100
NlaIII CATG 4 cut(s) 24, 69, 107, 206
NlaIV GGNNCC 1 cut(s) 256
NsiI ATGCAT 1 cut(s) 204
NspI RCATGY 2 cut(s) 69, 206
PaeI GCATGC 2 cut(s) 69, 206
PkrI GCNGC 1 cut(s) 295
PshAI GACNNNNGTC 1 cut(s) 35
Psp6I CCWGG 1 cut(s) 306
PspGI CCWGG 1 cut(s) 306
PspN4I GGNNCC 1 cut(s) 256
PspPI GGNCC 2 cut(s) 107, 262
RsaI GTAC 1 cut(s) 87
RsaNI GTAC 1 cut(s) 86
SaqAI TTAA 2 cut(s) 132, 267
SatI GCNGC 1 cut(s) 294
Sau3AI GATC 1 cut(s) 100
Sau96I GGNCC 2 cut(s) 107, 262
ScrFI CCNGG 1 cut(s) 308
SetI ASST 5 cut(s) 91, 97, 112, 225, 267
SfaNI GCATC 2 cut(s) 127, 305
SfcI CTRYAG 1 cut(s) 81
SinI GGWCC 2 cut(s) 107, 262
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
SphI GCATGC 2 cut(s) 69, 206
SsiI CCGC 1 cut(s) 338
StyD4I CCNGG 1 cut(s) 306
StyI CCWWGG 1 cut(s) 20
TaaI ACNGT 1 cut(s) 272
TaqI TCGA 2 cut(s) 29, 166
Tru1I TTAA 2 cut(s) 132, 267
Tru9I TTAA 2 cut(s) 132, 267
TseI GCWGC 1 cut(s) 293
TspDTI ATGAA 3 cut(s) 200, 315, 358
Vha464I CTTAAG 1 cut(s) 131
VpaK11BI GGWCC 2 cut(s) 107, 262
XceI RCATGY 2 cut(s) 69, 206
Zsp2I ATGCAT 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.