Rroxscaffold_2G00155360

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
91734331 .. 91735326
996 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00155360.1

Sequence Viewer

Length: 339 bp
ATGAGGAGAGAAATACTAACATGGTGTTCTACCCTCGTCTTTCTGTGCCTGCTTGCTCTGTCTGCATGTGAAAGCACTTCTACAGTACCTAAAGCTGAAGGTCATGGACCTCAGAAGAAAGAGAAGCAACTGAAGGATGTATATGATATAATGAACAAATCAAGTGGAAAAGGCCATCAAAGAACATATGGGAAAATGCATGTAGTTCATCATTTGAAGGTTTCCAAGAAAGCAAAGGGAATATACGGTGGTGCCTCAGACCTTAAGCGTCCAAAATCCAGCCATAGTGCAGCATCCGCTTTCCTGGGTAAACCCCCAATTTATTCTTCTCAGCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.34

Weight (kDa)

9.98

Isoelectric Point (pI)

43.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0015512)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 251
AciI CCGC 2 cut(s) 297, 334
AcuI CTGAAG 2 cut(s) 117, 152
AfaI GTAC 1 cut(s) 87
AflII CTTAAG 1 cut(s) 263
AgsI TTSAA 1 cut(s) 217
AjnI CCWGG 1 cut(s) 303
AjuI GAANNNNNNNTTGG 1 cut(s) 310
AluBI AGCT 1 cut(s) 95
AluI AGCT 1 cut(s) 95
AoxI GGCC 1 cut(s) 172
ApeKI GCWGC 1 cut(s) 290
AspS9I GGNCC 1 cut(s) 107
AvaII GGWCC 1 cut(s) 107
BanI GGYRCC 1 cut(s) 251
BbvI GCAGC 1 cut(s) 302
BccI CCATC 1 cut(s) 183
BciT130I CCWGG 1 cut(s) 305
BfmI CTRYAG 1 cut(s) 81
BfrI CTTAAG 1 cut(s) 263
BisI GCNGC 1 cut(s) 291
BlsI GCNGC 1 cut(s) 292
Bme1390I CCNGG 1 cut(s) 305
Bme18I GGWCC 1 cut(s) 107
BmgT120I GGNCC 1 cut(s) 107
BmiI GGNNCC 1 cut(s) 253
BmrFI CCNGG 1 cut(s) 305
BmsI GCATC 1 cut(s) 302
BsaJI CCNNGG 1 cut(s) 304
BseBI CCWGG 1 cut(s) 305
BseDI CCNNGG 1 cut(s) 304
BseGI GGATG 2 cut(s) 142, 293
BseMII CTCAG 2 cut(s) 125, 270
BseRI GAGGAG 1 cut(s) 19
BseXI GCAGC 1 cut(s) 302
BsgI GTGCAG 1 cut(s) 309
BshFI GGCC 1 cut(s) 174
BshNI GGYRCC 1 cut(s) 251
BsnI GGCC 1 cut(s) 174
BspACI CCGC 2 cut(s) 297, 334
BspANI GGCC 1 cut(s) 174
BspCNI CTCAG 2 cut(s) 124, 269
BspLI GGNNCC 1 cut(s) 253
BspT107I GGYRCC 1 cut(s) 251
BspTI CTTAAG 1 cut(s) 263
BssECI CCNNGG 1 cut(s) 304
Bst2UI CCWGG 1 cut(s) 305
Bst4CI ACNGT 2 cut(s) 85, 248
BstAFI CTTAAG 1 cut(s) 263
BstC8I GCNNGC 2 cut(s) 50, 54
BstDEI CTNAG 3 cut(s) 111, 256, 330
BstF5I GGATG 2 cut(s) 142, 293
BstMWI GCNNNNNNNGC 2 cut(s) 62, 296
BstNI CCWGG 1 cut(s) 305
BstNSI RCATGY 2 cut(s) 69, 203
BstSCI CCNGG 1 cut(s) 303
BstSFI CTRYAG 1 cut(s) 81
BstV1I GCAGC 1 cut(s) 302
BsuRI GGCC 1 cut(s) 174
BtsCI GGATG 2 cut(s) 142, 293
Cac8I GCNNGC 2 cut(s) 50, 54
Cfr13I GGNCC 1 cut(s) 107
CseI GACGC 1 cut(s) 257
Csp6I GTAC 1 cut(s) 86
CspCI CAANNNNNGTGG 2 cut(s) 145, 180
CviAII CATG 4 cut(s) 21, 66, 104, 200
CviJI RGCY 3 cut(s) 95, 174, 282
CviKI_1 RGCY 3 cut(s) 95, 174, 282
CviQI GTAC 1 cut(s) 86
DdeI CTNAG 3 cut(s) 111, 256, 330
Eco47I GGWCC 1 cut(s) 107
Eco57I CTGAAG 2 cut(s) 117, 152
EcoRII CCWGG 1 cut(s) 303
EcoT22I ATGCAT 1 cut(s) 201
FaeI CATG 4 cut(s) 24, 69, 107, 203
FatI CATG 4 cut(s) 20, 65, 103, 199
FauNDI CATATG 1 cut(s) 187
Fnu4HI GCNGC 1 cut(s) 291
FokI GGATG 2 cut(s) 149, 280
Fsp4HI GCNGC 1 cut(s) 291
GluI GCNGC 1 cut(s) 291
HaeIII GGCC 1 cut(s) 174
HgaI GACGC 1 cut(s) 257
Hin1II CATG 4 cut(s) 24, 69, 107, 203
Hpy166II GTNNAC 1 cut(s) 311
Hpy188I TCNGA 2 cut(s) 114, 259
Hpy8I GTNNAC 1 cut(s) 311
HpyAV CCTTC 3 cut(s) 92, 127, 211
HpyCH4III ACNGT 2 cut(s) 85, 248
HpyCH4V TGCA 3 cut(s) 65, 199, 290
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 296
HpyF3I CTNAG 3 cut(s) 111, 256, 330
Hsp92II CATG 4 cut(s) 24, 69, 107, 203
LpnPI CCDG 4 cut(s) 62, 290, 292, 317
Lsp1109I GCAGC 1 cut(s) 302
LweI GCATC 1 cut(s) 302
MboII GAAGA 2 cut(s) 127, 318
MluCI AATT 1 cut(s) 318
MnlI CCTC 3 cut(s) 44, 120, 265
Mph1103I ATGCAT 1 cut(s) 201
MseI TTAA 1 cut(s) 264
MspA1I CMGCKG 1 cut(s) 334
MspCI CTTAAG 1 cut(s) 263
MspR9I CCNGG 1 cut(s) 305
MvaI CCWGG 1 cut(s) 305
MwoI GCNNNNNNNGC 2 cut(s) 62, 296
NdeI CATATG 1 cut(s) 187
NlaIII CATG 4 cut(s) 24, 69, 107, 203
NlaIV GGNNCC 1 cut(s) 253
NsiI ATGCAT 1 cut(s) 201
NspI RCATGY 2 cut(s) 69, 203
PkrI GCNGC 1 cut(s) 292
Psp6I CCWGG 1 cut(s) 303
PspGI CCWGG 1 cut(s) 303
PspN4I GGNNCC 1 cut(s) 253
PspPI GGNCC 1 cut(s) 107
RsaI GTAC 1 cut(s) 87
RsaNI GTAC 1 cut(s) 86
SaqAI TTAA 1 cut(s) 264
SatI GCNGC 1 cut(s) 291
Sau96I GGNCC 1 cut(s) 107
ScrFI CCNGG 1 cut(s) 305
SetI ASST 6 cut(s) 91, 97, 103, 112, 222, 264
SfaNI GCATC 1 cut(s) 302
SfcI CTRYAG 1 cut(s) 81
SinI GGWCC 1 cut(s) 107
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
Sse9I AATT 1 cut(s) 318
SsiI CCGC 2 cut(s) 297, 334
StyD4I CCNGG 1 cut(s) 303
TaaI ACNGT 2 cut(s) 85, 248
TasI AATT 1 cut(s) 318
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TseI GCWGC 1 cut(s) 290
TspDTI ATGAA 2 cut(s) 167, 197
Vha464I CTTAAG 1 cut(s) 263
VpaK11BI GGWCC 1 cut(s) 107
XceI RCATGY 2 cut(s) 69, 203
Zsp2I ATGCAT 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.