pycom15g13520

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0015512
Physical Location & Seq
Forward (+)
9191426 .. 9191898
473 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g13520.2

Sequence Viewer

Length: 381 bp
ATGAGAACAGAATTACTAATATGGTCCTTTTTTATGCTCTGTCTGGTTGTTCATTCTGCATGTGAAAGCACTTCCAACCCTAAAACTGGAGATTATACACCTCTGAAGAAGCAGCATGACCACCTTAAGCACAAGGATGTATATGATATGATGAACAAATCAAGCAGAAAAGACCATCAAAGAATGAATGAAGTTCAGCATTTAAGGATTTCCCTGAGAGCAAAACCAGTCTACGGTAGCGGCGTCTACCTTAGGCGCCCCCGTCCCACCAAGGGTGCAGCAAGCTCTCTACTGGCTAAGCCCCCCACTTTCTTCCTGTCCGCAGTGCTCAGGCATGTTGCTGTTGGATTGATCGATCTTTGCTCTGTATTAATCGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

14.3

Weight (kDa)

9.91

Isoelectric Point (pI)

39.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g00750
malus_domestica MD02G1006100.v1.1 MD15G1150800.v1.1 MD15G1150900.v1.1
prunus_persica Prupe.7G264800_v2.0.a1
pyrus_communis pycom15g13520
rosa_chinensis RchiOBHm_Chr2g0085471
rosa_laevigata RLG00000015693
rosa_multiflora Rmu_sc0007908.1_g000010
rosa_roxburghii Rroxscaffold_2G00155360
rosa_rugosa Rorug01G0460600
rosa_samantha Rh2AG009100 Rh2BG010200 Rh2CG010700 Rh2DG011400
rosa_wichuraiana Rw2G000850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 255
AccI GTMKAC 2 cut(s) 231, 246
AciI CCGC 2 cut(s) 240, 321
AcuI CTGAAG 1 cut(s) 125
AcyI GRCGYC 2 cut(s) 243, 256
AfiI CCNNNNNNNGG 3 cut(s) 86, 233, 272
AflII CTTAAG 1 cut(s) 125
AluBI AGCT 1 cut(s) 285
AluI AGCT 1 cut(s) 285
Alw21I GWGCWC 1 cut(s) 330
ApeKI GCWGC 2 cut(s) 112, 278
AseI ATTAAT 1 cut(s) 371
AspLEI GCGC 1 cut(s) 258
AspS9I GGNCC 1 cut(s) 24
AvaII GGWCC 1 cut(s) 24
AxyI CCTNAGG 1 cut(s) 251
BanI GGYRCC 1 cut(s) 255
Bbv12I GWGCWC 1 cut(s) 330
BbvI GCAGC 2 cut(s) 124, 290
BccI CCATC 1 cut(s) 183
BfoI RGCGCY 1 cut(s) 259
BfrI CTTAAG 1 cut(s) 125
BisI GCNGC 3 cut(s) 113, 241, 279
BlpI GCTNAGC 1 cut(s) 297
BlsI GCNGC 3 cut(s) 114, 242, 280
Bme18I GGWCC 1 cut(s) 24
BmgT120I GGNCC 1 cut(s) 24
BmiI GGNNCC 1 cut(s) 257
BpmI CTGGAG 1 cut(s) 108
Bpu10I CCTNAGC 1 cut(s) 329
Bpu1102I GCTNAGC 1 cut(s) 297
Bsa29I ATCGAT 1 cut(s) 354
BsaHI GRCGYC 2 cut(s) 243, 256
BsaJI CCNNGG 1 cut(s) 270
Bsc4I CCNNNNNNNGG 3 cut(s) 86, 233, 272
Bse1I ACTGG 3 cut(s) 91, 227, 297
Bse21I CCTNAGG 1 cut(s) 251
BseCI ATCGAT 1 cut(s) 354
BseDI CCNNGG 1 cut(s) 270
BseGI GGATG 1 cut(s) 142
BseLI CCNNNNNNNGG 3 cut(s) 86, 233, 272
BseMII CTCAG 2 cut(s) 206, 343
BseNI ACTGG 3 cut(s) 91, 227, 297
BseXI GCAGC 2 cut(s) 124, 290
BsgI GTGCAG 1 cut(s) 297
BshNI GGYRCC 1 cut(s) 255
BshVI ATCGAT 1 cut(s) 354
BsiHKAI GWGCWC 1 cut(s) 330
BslFI GGGAC 1 cut(s) 249
BslI CCNNNNNNNGG 3 cut(s) 86, 233, 272
BsmFI GGGAC 1 cut(s) 249
Bsp1286I GDGCHC 1 cut(s) 330
Bsp143I GATC 2 cut(s) 351, 355
Bsp1720I GCTNAGC 1 cut(s) 297
BspACI CCGC 2 cut(s) 240, 321
BspCNI CTCAG 2 cut(s) 207, 342
BspDI ATCGAT 1 cut(s) 354
BspLI GGNNCC 1 cut(s) 257
BspT107I GGYRCC 1 cut(s) 255
BspTI CTTAAG 1 cut(s) 125
BsrI ACTGG 3 cut(s) 91, 227, 297
BssECI CCNNGG 1 cut(s) 270
BssMI GATC 2 cut(s) 351, 355
BssNI GRCGYC 2 cut(s) 243, 256
BssT1I CCWWGG 1 cut(s) 270
Bst4CI ACNGT 1 cut(s) 236
BstACI GRCGYC 2 cut(s) 243, 256
BstAFI CTTAAG 1 cut(s) 125
BstC8I GCNNGC 1 cut(s) 283
BstDEI CTNAG 4 cut(s) 215, 251, 297, 329
BstF5I GGATG 1 cut(s) 142
BstH2I RGCGCY 1 cut(s) 259
BstHHI GCGC 1 cut(s) 258
BstKTI GATC 2 cut(s) 354, 358
BstMBI GATC 2 cut(s) 351, 355
BstNSI RCATGY 2 cut(s) 63, 338
BstV1I GCAGC 2 cut(s) 124, 290
Bsu15I ATCGAT 1 cut(s) 354
Bsu36I CCTNAGG 1 cut(s) 251
BsuTUI ATCGAT 1 cut(s) 354
BtsCI GGATG 1 cut(s) 142
BtsI GCAGTG 1 cut(s) 330
BtsIMutI CAGTG 1 cut(s) 330
Cac8I GCNNGC 1 cut(s) 283
CfoI GCGC 1 cut(s) 258
Cfr13I GGNCC 1 cut(s) 24
ClaI ATCGAT 1 cut(s) 354
CseI GACGC 1 cut(s) 232
CviAII CATG 3 cut(s) 60, 116, 335
CviJI RGCY 3 cut(s) 285, 296, 301
CviKI_1 RGCY 3 cut(s) 285, 296, 301
DdeI CTNAG 4 cut(s) 215, 251, 297, 329
DinI GGCGCC 1 cut(s) 257
DpnI GATC 2 cut(s) 353, 357
DpnII GATC 2 cut(s) 351, 355
Eco130I CCWWGG 1 cut(s) 270
Eco47I GGWCC 1 cut(s) 24
Eco57I CTGAAG 1 cut(s) 125
Eco81I CCTNAGG 1 cut(s) 251
EcoT14I CCWWGG 1 cut(s) 270
EgeI GGCGCC 1 cut(s) 257
EheI GGCGCC 1 cut(s) 257
ErhI CCWWGG 1 cut(s) 270
FaeI CATG 3 cut(s) 63, 119, 338
FaiI YATR 9 cut(s) 22, 35, 61, 96, 117, 142, 144, 149, 336
FaqI GGGAC 1 cut(s) 249
FatI CATG 3 cut(s) 59, 115, 334
FblI GTMKAC 2 cut(s) 231, 246
Fnu4HI GCNGC 3 cut(s) 113, 241, 279
FokI GGATG 1 cut(s) 149
Fsp4HI GCNGC 3 cut(s) 113, 241, 279
GlaI GCGC 1 cut(s) 257
GluI GCNGC 3 cut(s) 113, 241, 279
GsuI CTGGAG 1 cut(s) 108
HaeII RGCGCY 1 cut(s) 259
HgaI GACGC 1 cut(s) 232
HhaI GCGC 1 cut(s) 258
Hin1I GRCGYC 2 cut(s) 243, 256
Hin1II CATG 3 cut(s) 63, 119, 338
Hin6I GCGC 1 cut(s) 256
HinP1I GCGC 1 cut(s) 256
Hpy166II GTNNAC 2 cut(s) 232, 247
Hpy188I TCNGA 1 cut(s) 105
Hpy8I GTNNAC 2 cut(s) 232, 247
HpyCH4III ACNGT 1 cut(s) 236
HpyCH4V TGCA 2 cut(s) 59, 278
HpyF3I CTNAG 4 cut(s) 215, 251, 297, 329
Hsp92I GRCGYC 2 cut(s) 243, 256
Hsp92II CATG 3 cut(s) 63, 119, 338
HspAI GCGC 1 cut(s) 256
KasI GGCGCC 1 cut(s) 255
Kzo9I GATC 2 cut(s) 351, 355
LpnPI CCDG 7 cut(s) 29, 72, 227, 240, 278, 316, 329
Lsp1109I GCAGC 2 cut(s) 124, 290
MalI GATC 2 cut(s) 353, 357
MboI GATC 2 cut(s) 351, 355
MboII GAAGA 2 cut(s) 118, 304
MhlI GDGCHC 1 cut(s) 330
MluCI AATT 1 cut(s) 11
Mly113I GGCGCC 1 cut(s) 256
MmeI TCCRAC 2 cut(s) 99, 325
MnlI CCTC 1 cut(s) 111
MseI TTAA 3 cut(s) 126, 203, 371
MslI CAYNNNNRTG 1 cut(s) 135
MspCI CTTAAG 1 cut(s) 125
NarI GGCGCC 1 cut(s) 256
NdeII GATC 2 cut(s) 351, 355
NlaIII CATG 3 cut(s) 63, 119, 338
NlaIV GGNNCC 1 cut(s) 257
NspI RCATGY 2 cut(s) 63, 338
PcsI WCGNNNNNNNCGW 1 cut(s) 240
PkrI GCNGC 3 cut(s) 114, 242, 280
PluTI GGCGCC 1 cut(s) 259
PshBI ATTAAT 1 cut(s) 371
PspN4I GGNNCC 1 cut(s) 257
PspPI GGNCC 1 cut(s) 24
RseI CAYNNNNRTG 1 cut(s) 135
SaqAI TTAA 3 cut(s) 126, 203, 371
SatI GCNGC 3 cut(s) 113, 241, 279
Sau3AI GATC 2 cut(s) 351, 355
Sau96I GGNCC 1 cut(s) 24
SduI GDGCHC 1 cut(s) 330
SetI ASST 4 cut(s) 103, 126, 252, 287
SfoI GGCGCC 1 cut(s) 257
SinI GGWCC 1 cut(s) 24
SmiMI CAYNNNNRTG 1 cut(s) 135
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
Sse9I AATT 1 cut(s) 11
SsiI CCGC 2 cut(s) 240, 321
SspDI GGCGCC 1 cut(s) 255
StyI CCWWGG 1 cut(s) 270
TaaI ACNGT 1 cut(s) 236
TaqI TCGA 1 cut(s) 354
TasI AATT 1 cut(s) 11
TauI GCSGC 1 cut(s) 243
Tru1I TTAA 3 cut(s) 126, 203, 371
Tru9I TTAA 3 cut(s) 126, 203, 371
TscAI CASTG 1 cut(s) 330
TseI GCWGC 2 cut(s) 112, 278
TspDTI ATGAA 4 cut(s) 41, 167, 200, 204
TspRI CASTG 1 cut(s) 330
Vha464I CTTAAG 1 cut(s) 125
VpaK11BI GGWCC 1 cut(s) 24
VspI ATTAAT 1 cut(s) 371
XceI RCATGY 2 cut(s) 63, 338
XmiI GTMKAC 2 cut(s) 231, 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.