Rmu_sc0007908.1_g000010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007908.1
OG0015512
Physical Location & Seq
Reverse (-)
27068 .. 27537
470 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007908.1_g000010.1.cds

Sequence Viewer

Length: 384 bp
atgaggagagaaatactcacatggtgttctaccctcgtctttctgtgcctgcttgctctgtctacgtgtgaaagcacttctacagtacctaaagctgaaggtcatggacctcagaagaaagagaagcaactaaaggatgtatatgatataatgaccaaatcaagtggaaaaggccatcaaagaacatatgggaaaatgcatgtagttcatcatttgaaggtttccaagaaagcaaagggaatatacggtggtgcctcagacctcaagcgtccaaaatccagccatagtgcagcatccgctttcctgggtaaaccccccaatttattcttctcagcggtagtcaggcatgttactatcggatggttcatatttgcactgttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

14.09

Weight (kDa)

10.02

Isoelectric Point (pI)

33.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g00750
malus_domestica MD02G1006100.v1.1 MD15G1150800.v1.1 MD15G1150900.v1.1
prunus_persica Prupe.7G264800_v2.0.a1
pyrus_communis pycom15g13520
rosa_chinensis RchiOBHm_Chr2g0085471
rosa_laevigata RLG00000015693
rosa_multiflora Rmu_sc0007908.1_g000010
rosa_roxburghii Rroxscaffold_2G00155360
rosa_rugosa Rorug01G0460600
rosa_samantha Rh2AG009100 Rh2BG010200 Rh2CG010700 Rh2DG011400
rosa_wichuraiana Rw2G000850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 251
AccI GTMKAC 1 cut(s) 62
AciI CCGC 2 cut(s) 297, 335
AcuI CTGAAG 1 cut(s) 117
AdeI CACNNNGTG 1 cut(s) 24
AfaI GTAC 1 cut(s) 87
AflIII ACRYGT 1 cut(s) 65
AgsI TTSAA 1 cut(s) 217
AjnI CCWGG 1 cut(s) 303
AjuI GAANNNNNNNTTGG 2 cut(s) 311, 343
AluBI AGCT 1 cut(s) 95
AluI AGCT 1 cut(s) 95
AoxI GGCC 1 cut(s) 172
ApeKI GCWGC 1 cut(s) 290
AspS9I GGNCC 1 cut(s) 107
AvaII GGWCC 1 cut(s) 107
BanI GGYRCC 1 cut(s) 251
BbvI GCAGC 1 cut(s) 302
BccI CCATC 2 cut(s) 183, 354
BciT130I CCWGG 1 cut(s) 305
BfmI CTRYAG 1 cut(s) 81
BisI GCNGC 1 cut(s) 291
BlsI GCNGC 1 cut(s) 292
Bme1390I CCNGG 1 cut(s) 305
Bme18I GGWCC 1 cut(s) 107
BmgT120I GGNCC 1 cut(s) 107
BmiI GGNNCC 1 cut(s) 253
BmrFI CCNGG 1 cut(s) 305
BmsI GCATC 1 cut(s) 302
BplI GAGNNNNNCTC 1 cut(s) 32
BpuEI CTTGAG 1 cut(s) 248
BsaAI YACGTR 1 cut(s) 66
BsaJI CCNNGG 1 cut(s) 304
BseBI CCWGG 1 cut(s) 305
BseDI CCNNGG 1 cut(s) 304
BseGI GGATG 3 cut(s) 142, 293, 365
BseMII CTCAG 3 cut(s) 125, 270, 345
BseRI GAGGAG 1 cut(s) 19
BseXI GCAGC 1 cut(s) 302
BsgI GTGCAG 1 cut(s) 309
BshFI GGCC 1 cut(s) 174
BshNI GGYRCC 1 cut(s) 251
BsnI GGCC 1 cut(s) 174
BspACI CCGC 2 cut(s) 297, 335
BspANI GGCC 1 cut(s) 174
BspCNI CTCAG 3 cut(s) 124, 269, 344
BspLI GGNNCC 1 cut(s) 253
BspT107I GGYRCC 1 cut(s) 251
BssECI CCNNGG 1 cut(s) 304
Bst2UI CCWGG 1 cut(s) 305
Bst4CI ACNGT 3 cut(s) 85, 248, 378
BstBAI YACGTR 1 cut(s) 66
BstC8I GCNNGC 2 cut(s) 50, 54
BstDEI CTNAG 3 cut(s) 111, 256, 331
BstF5I GGATG 3 cut(s) 142, 293, 365
BstMWI GCNNNNNNNGC 1 cut(s) 296
BstNI CCWGG 1 cut(s) 305
BstNSI RCATGY 2 cut(s) 203, 350
BstSCI CCNGG 1 cut(s) 303
BstSFI CTRYAG 1 cut(s) 81
BstV1I GCAGC 1 cut(s) 302
BsuRI GGCC 1 cut(s) 174
BtsCI GGATG 3 cut(s) 142, 293, 365
BtsIMutI CAGTG 1 cut(s) 374
Cac8I GCNNGC 2 cut(s) 50, 54
Cfr13I GGNCC 1 cut(s) 107
CseI GACGC 1 cut(s) 257
Csp6I GTAC 1 cut(s) 86
CspCI CAANNNNNGTGG 2 cut(s) 145, 180
CviAII CATG 4 cut(s) 21, 104, 200, 347
CviJI RGCY 3 cut(s) 95, 174, 282
CviKI_1 RGCY 3 cut(s) 95, 174, 282
CviQI GTAC 1 cut(s) 86
DdeI CTNAG 3 cut(s) 111, 256, 331
DraIII CACNNNGTG 1 cut(s) 24
Eco47I GGWCC 1 cut(s) 107
Eco57I CTGAAG 1 cut(s) 117
EcoRII CCWGG 1 cut(s) 303
EcoT22I ATGCAT 1 cut(s) 201
FaeI CATG 4 cut(s) 24, 107, 203, 350
FatI CATG 4 cut(s) 20, 103, 199, 346
FauNDI CATATG 1 cut(s) 187
FblI GTMKAC 1 cut(s) 62
Fnu4HI GCNGC 1 cut(s) 291
FokI GGATG 3 cut(s) 149, 280, 372
Fsp4HI GCNGC 1 cut(s) 291
GluI GCNGC 1 cut(s) 291
HaeIII GGCC 1 cut(s) 174
HgaI GACGC 1 cut(s) 257
Hin1II CATG 4 cut(s) 24, 107, 203, 350
Hpy166II GTNNAC 2 cut(s) 63, 311
Hpy188I TCNGA 3 cut(s) 114, 259, 359
Hpy8I GTNNAC 2 cut(s) 63, 311
HpyAV CCTTC 2 cut(s) 92, 211
HpyCH4III ACNGT 3 cut(s) 85, 248, 378
HpyCH4IV ACGT 1 cut(s) 65
HpyCH4V TGCA 3 cut(s) 199, 290, 374
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
HpyF3I CTNAG 3 cut(s) 111, 256, 331
HpySE526I ACGT 1 cut(s) 65
Hsp92II CATG 4 cut(s) 24, 107, 203, 350
LpnPI CCDG 5 cut(s) 62, 290, 292, 317, 328
Lsp1109I GCAGC 1 cut(s) 302
LweI GCATC 1 cut(s) 302
MaeII ACGT 1 cut(s) 65
MaeIII GTNAC 1 cut(s) 349
MboII GAAGA 2 cut(s) 127, 319
MluCI AATT 1 cut(s) 319
MnlI CCTC 4 cut(s) 44, 120, 265, 272
Mph1103I ATGCAT 1 cut(s) 201
MspA1I CMGCKG 1 cut(s) 335
MspR9I CCNGG 1 cut(s) 305
MvaI CCWGG 1 cut(s) 305
MwoI GCNNNNNNNGC 1 cut(s) 296
NdeI CATATG 1 cut(s) 187
NlaIII CATG 4 cut(s) 24, 107, 203, 350
NlaIV GGNNCC 1 cut(s) 253
NsiI ATGCAT 1 cut(s) 201
NspI RCATGY 2 cut(s) 203, 350
PkrI GCNGC 1 cut(s) 292
Ppu21I YACGTR 1 cut(s) 66
Psp6I CCWGG 1 cut(s) 303
PspGI CCWGG 1 cut(s) 303
PspN4I GGNNCC 1 cut(s) 253
PspPI GGNCC 1 cut(s) 107
RsaI GTAC 1 cut(s) 87
RsaNI GTAC 1 cut(s) 86
SatI GCNGC 1 cut(s) 291
Sau96I GGNCC 1 cut(s) 107
ScrFI CCNGG 1 cut(s) 305
SetI ASST 7 cut(s) 68, 91, 97, 103, 112, 222, 264
SfaNI GCATC 1 cut(s) 302
SfcI CTRYAG 1 cut(s) 81
SinI GGWCC 1 cut(s) 107
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
Sse9I AATT 1 cut(s) 319
SsiI CCGC 2 cut(s) 297, 335
StyD4I CCNGG 1 cut(s) 303
TaaI ACNGT 3 cut(s) 85, 248, 378
TaiI ACGT 1 cut(s) 68
TasI AATT 1 cut(s) 319
TscAI CASTG 1 cut(s) 381
TseI GCWGC 1 cut(s) 290
TspDTI ATGAA 2 cut(s) 197, 355
TspRI CASTG 1 cut(s) 381
VpaK11BI GGWCC 1 cut(s) 107
XceI RCATGY 2 cut(s) 203, 350
XmiI GTMKAC 1 cut(s) 62
Zsp2I ATGCAT 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.