Rh2CG010700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0015512
Physical Location & Seq
Forward (+)
883278 .. 886492
3215 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG010700.1

Sequence Viewer

Length: 393 bp
ATGAGGAGAGAAATACTAACATGGTGTTCTACCCTCGTCTTTCTGTGCCTGCTTGCTCTGTCTGCATGTGAAAGCACTTCTACAGTACCTAAAGCTGAAGGTCATGGACCTCAGAAGAAAGAGAAGCAACTTAAGGGTTGTGCAGATGTATATGATATAATGACCAAATCAAGTGGAAAAGGCCATCAAAGAACATATGGGAAAATGCATGTAGTTCATCATTTGAAGGTTTCCAAGAAAGCAAAGGGAATATACGGTGGTGCCTCAGACCTTAAGCGTCCAAAATCCAGCCATAGTGCAGCATCCGCTTTCCTGGGTAAACCCCCCAATTTATTCTTCTCAGCGGTAGTCAGGCATGTTACTATCGGATGGTTCATATTTGCACTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.29

Weight (kDa)

9.94

Isoelectric Point (pI)

34.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g00750
malus_domestica MD02G1006100.v1.1 MD15G1150800.v1.1 MD15G1150900.v1.1
prunus_persica Prupe.7G264800_v2.0.a1
pyrus_communis pycom15g13520
rosa_chinensis RchiOBHm_Chr2g0085471
rosa_laevigata RLG00000015693
rosa_multiflora Rmu_sc0007908.1_g000010
rosa_roxburghii Rroxscaffold_2G00155360
rosa_rugosa Rorug01G0460600
rosa_samantha Rh2AG009100 Rh2BG010200 Rh2CG010700 Rh2DG011400
rosa_wichuraiana Rw2G000850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 260
AciI CCGC 2 cut(s) 306, 344
AcuI CTGAAG 1 cut(s) 117
AfaI GTAC 1 cut(s) 87
AflII CTTAAG 2 cut(s) 131, 272
AgsI TTSAA 1 cut(s) 226
AjnI CCWGG 1 cut(s) 312
AjuI GAANNNNNNNTTGG 2 cut(s) 320, 352
AluBI AGCT 1 cut(s) 95
AluI AGCT 1 cut(s) 95
AoxI GGCC 1 cut(s) 181
ApeKI GCWGC 1 cut(s) 299
AspS9I GGNCC 1 cut(s) 107
AvaII GGWCC 1 cut(s) 107
BanI GGYRCC 1 cut(s) 260
BbvI GCAGC 1 cut(s) 311
BccI CCATC 2 cut(s) 192, 363
BciT130I CCWGG 1 cut(s) 314
BfmI CTRYAG 1 cut(s) 81
BfrI CTTAAG 2 cut(s) 131, 272
BisI GCNGC 1 cut(s) 300
BlsI GCNGC 1 cut(s) 301
Bme1390I CCNGG 1 cut(s) 314
Bme18I GGWCC 1 cut(s) 107
BmgT120I GGNCC 1 cut(s) 107
BmiI GGNNCC 1 cut(s) 262
BmrFI CCNGG 1 cut(s) 314
BmsI GCATC 1 cut(s) 311
BsaJI CCNNGG 1 cut(s) 313
BseBI CCWGG 1 cut(s) 314
BseDI CCNNGG 1 cut(s) 313
BseGI GGATG 2 cut(s) 302, 374
BseMII CTCAG 3 cut(s) 125, 279, 354
BseRI GAGGAG 1 cut(s) 19
BseXI GCAGC 1 cut(s) 311
BsgI GTGCAG 2 cut(s) 162, 318
BshFI GGCC 1 cut(s) 183
BshNI GGYRCC 1 cut(s) 260
BsnI GGCC 1 cut(s) 183
BspACI CCGC 2 cut(s) 306, 344
BspANI GGCC 1 cut(s) 183
BspCNI CTCAG 3 cut(s) 124, 278, 353
BspLI GGNNCC 1 cut(s) 262
BspT107I GGYRCC 1 cut(s) 260
BspTI CTTAAG 2 cut(s) 131, 272
BssECI CCNNGG 1 cut(s) 313
Bst2UI CCWGG 1 cut(s) 314
Bst4CI ACNGT 3 cut(s) 85, 257, 387
BstAFI CTTAAG 2 cut(s) 131, 272
BstC8I GCNNGC 2 cut(s) 50, 54
BstDEI CTNAG 3 cut(s) 111, 265, 340
BstF5I GGATG 2 cut(s) 302, 374
BstMWI GCNNNNNNNGC 2 cut(s) 62, 305
BstNI CCWGG 1 cut(s) 314
BstNSI RCATGY 3 cut(s) 69, 212, 359
BstSCI CCNGG 1 cut(s) 312
BstSFI CTRYAG 1 cut(s) 81
BstV1I GCAGC 1 cut(s) 311
BsuRI GGCC 1 cut(s) 183
BtsCI GGATG 2 cut(s) 302, 374
BtsIMutI CAGTG 1 cut(s) 383
Cac8I GCNNGC 2 cut(s) 50, 54
Cfr13I GGNCC 1 cut(s) 107
CseI GACGC 1 cut(s) 266
Csp6I GTAC 1 cut(s) 86
CspCI CAANNNNNGTGG 2 cut(s) 154, 189
CviAII CATG 5 cut(s) 21, 66, 104, 209, 356
CviJI RGCY 3 cut(s) 95, 183, 291
CviKI_1 RGCY 3 cut(s) 95, 183, 291
CviQI GTAC 1 cut(s) 86
DdeI CTNAG 3 cut(s) 111, 265, 340
Eco47I GGWCC 1 cut(s) 107
Eco57I CTGAAG 1 cut(s) 117
EcoRII CCWGG 1 cut(s) 312
EcoT22I ATGCAT 1 cut(s) 210
FaeI CATG 5 cut(s) 24, 69, 107, 212, 359
FatI CATG 5 cut(s) 20, 65, 103, 208, 355
FauNDI CATATG 1 cut(s) 196
Fnu4HI GCNGC 1 cut(s) 300
FokI GGATG 2 cut(s) 289, 381
Fsp4HI GCNGC 1 cut(s) 300
GluI GCNGC 1 cut(s) 300
HaeIII GGCC 1 cut(s) 183
HgaI GACGC 1 cut(s) 266
Hin1II CATG 5 cut(s) 24, 69, 107, 212, 359
Hpy166II GTNNAC 1 cut(s) 320
Hpy188I TCNGA 3 cut(s) 114, 268, 368
Hpy8I GTNNAC 1 cut(s) 320
HpyAV CCTTC 2 cut(s) 92, 220
HpyCH4III ACNGT 3 cut(s) 85, 257, 387
HpyCH4V TGCA 5 cut(s) 65, 143, 208, 299, 383
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 305
HpyF3I CTNAG 3 cut(s) 111, 265, 340
Hsp92II CATG 5 cut(s) 24, 69, 107, 212, 359
LpnPI CCDG 5 cut(s) 62, 299, 301, 326, 337
Lsp1109I GCAGC 1 cut(s) 311
LweI GCATC 1 cut(s) 311
MaeIII GTNAC 1 cut(s) 358
MboII GAAGA 2 cut(s) 127, 328
MluCI AATT 1 cut(s) 328
MnlI CCTC 3 cut(s) 44, 120, 274
Mph1103I ATGCAT 1 cut(s) 210
MseI TTAA 2 cut(s) 132, 273
MspA1I CMGCKG 1 cut(s) 344
MspCI CTTAAG 2 cut(s) 131, 272
MspR9I CCNGG 1 cut(s) 314
MvaI CCWGG 1 cut(s) 314
MwoI GCNNNNNNNGC 2 cut(s) 62, 305
NdeI CATATG 1 cut(s) 196
NlaIII CATG 5 cut(s) 24, 69, 107, 212, 359
NlaIV GGNNCC 1 cut(s) 262
NsiI ATGCAT 1 cut(s) 210
NspI RCATGY 3 cut(s) 69, 212, 359
PkrI GCNGC 1 cut(s) 301
Psp6I CCWGG 1 cut(s) 312
PspGI CCWGG 1 cut(s) 312
PspN4I GGNNCC 1 cut(s) 262
PspPI GGNCC 1 cut(s) 107
RsaI GTAC 1 cut(s) 87
RsaNI GTAC 1 cut(s) 86
SaqAI TTAA 2 cut(s) 132, 273
SatI GCNGC 1 cut(s) 300
Sau96I GGNCC 1 cut(s) 107
ScrFI CCNGG 1 cut(s) 314
SetI ASST 6 cut(s) 91, 97, 103, 112, 231, 273
SfaNI GCATC 1 cut(s) 311
SfcI CTRYAG 1 cut(s) 81
SinI GGWCC 1 cut(s) 107
SmlI CTYRAG 2 cut(s) 131, 272
SmoI CTYRAG 2 cut(s) 131, 272
Sse9I AATT 1 cut(s) 328
SsiI CCGC 2 cut(s) 306, 344
StyD4I CCNGG 1 cut(s) 312
TaaI ACNGT 3 cut(s) 85, 257, 387
TasI AATT 1 cut(s) 328
Tru1I TTAA 2 cut(s) 132, 273
Tru9I TTAA 2 cut(s) 132, 273
TscAI CASTG 1 cut(s) 390
TseI GCWGC 1 cut(s) 299
TspDTI ATGAA 2 cut(s) 206, 364
TspRI CASTG 1 cut(s) 390
Vha464I CTTAAG 2 cut(s) 131, 272
VpaK11BI GGWCC 1 cut(s) 107
XceI RCATGY 3 cut(s) 69, 212, 359
Zsp2I ATGCAT 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.