MD02G1006100.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0015512
Physical Location & Seq
Forward (+)
423872 .. 424563
692 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1006100.v1.1.491

Sequence Viewer

Length: 378 bp
ATGAGAAGAGAATTACTAATATTGTCCTTTTTTATTCTCTCTGTGGTTGTTCATTCTGCATGTGAAACCACTTCCAACCCTAAAACCGGAGATTATACGCCTCTGAAGAAGCAGCATGATTACCTTAAGCTTAAGGATGTATATGATACGATGAACAAATCAAGCACAAAAGGCCATCAAAGAATGCATGAAGTTCAGCATCTAAGGATTTCCCAGAAACTGAAGGCAAAGCCAACCTCCGGTGGCGCCTCCGACCTTAGTCGCACCCGTCCCAGCAAGGGTGTAGCAAGCTCTGTACTAGCTAAACCCCCCAATTTCTTCCTCTTCGCAGTGTTCAGGCATGTTGCTGTTGGACTGATCATCTTTGCTCTGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

14.05

Weight (kDa)

10.11

Isoelectric Point (pI)

33.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g00750
malus_domestica MD02G1006100.v1.1 MD15G1150800.v1.1 MD15G1150900.v1.1
prunus_persica Prupe.7G264800_v2.0.a1
pyrus_communis pycom15g13520
rosa_chinensis RchiOBHm_Chr2g0085471
rosa_laevigata RLG00000015693
rosa_multiflora Rmu_sc0007908.1_g000010
rosa_roxburghii Rroxscaffold_2G00155360
rosa_rugosa Rorug01G0460600
rosa_samantha Rh2AG009100 Rh2BG010200 Rh2CG010700 Rh2DG011400
rosa_wichuraiana Rw2G000850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 245
AcuI CTGAAG 2 cut(s) 125, 242
AcyI GRCGYC 1 cut(s) 246
AfaI GTAC 1 cut(s) 297
AfiI CCNNNNNNNGG 3 cut(s) 86, 239, 278
AflII CTTAAG 2 cut(s) 125, 131
AluBI AGCT 3 cut(s) 130, 291, 302
AluI AGCT 3 cut(s) 130, 291, 302
AlwNI CAGNNNCTG 1 cut(s) 220
AoxI GGCC 1 cut(s) 172
ApeKI GCWGC 1 cut(s) 112
AspLEI GCGC 1 cut(s) 248
BanI GGYRCC 1 cut(s) 245
BbvI GCAGC 1 cut(s) 124
BccI CCATC 1 cut(s) 183
BclI TGATCA 1 cut(s) 357
BfaI CTAG 1 cut(s) 299
BfoI RGCGCY 1 cut(s) 249
BfrI CTTAAG 2 cut(s) 125, 131
BisI GCNGC 1 cut(s) 113
BlsI GCNGC 1 cut(s) 114
BmiI GGNNCC 1 cut(s) 247
BmsI GCATC 1 cut(s) 208
BoxI GACNNNNGTC 1 cut(s) 258
BsaHI GRCGYC 1 cut(s) 246
BsaWI WCCGGW 2 cut(s) 86, 239
Bsc4I CCNNNNNNNGG 3 cut(s) 86, 239, 278
BseGI GGATG 1 cut(s) 142
BseLI CCNNNNNNNGG 3 cut(s) 86, 239, 278
BseXI GCAGC 1 cut(s) 124
BseYI CCCAGC 1 cut(s) 272
BshFI GGCC 1 cut(s) 174
BshNI GGYRCC 1 cut(s) 245
BsiSI CCGG 2 cut(s) 87, 240
BslFI GGGAC 1 cut(s) 255
BslI CCNNNNNNNGG 3 cut(s) 86, 239, 278
BsmFI GGGAC 1 cut(s) 255
BsmI GAATGC 1 cut(s) 189
BsnI GGCC 1 cut(s) 174
Bsp143I GATC 1 cut(s) 357
BspANI GGCC 1 cut(s) 174
BspLI GGNNCC 1 cut(s) 247
BspT107I GGYRCC 1 cut(s) 245
BspTI CTTAAG 2 cut(s) 125, 131
BssMI GATC 1 cut(s) 357
BssNI GRCGYC 1 cut(s) 246
Bst6I CTCTTC 1 cut(s) 329
BstACI GRCGYC 1 cut(s) 246
BstAFI CTTAAG 2 cut(s) 125, 131
BstC8I GCNNGC 1 cut(s) 289
BstDEI CTNAG 2 cut(s) 203, 257
BstF5I GGATG 1 cut(s) 142
BstH2I RGCGCY 1 cut(s) 249
BstHHI GCGC 1 cut(s) 248
BstKTI GATC 1 cut(s) 360
BstMBI GATC 1 cut(s) 357
BstMWI GCNNNNNNNGC 1 cut(s) 171
BstNSI RCATGY 2 cut(s) 63, 344
BstPAI GACNNNNGTC 1 cut(s) 258
BstV1I GCAGC 1 cut(s) 124
BsuRI GGCC 1 cut(s) 174
BtsCI GGATG 1 cut(s) 142
BtsI GCAGTG 1 cut(s) 336
BtsIMutI CAGTG 1 cut(s) 336
Cac8I GCNNGC 1 cut(s) 289
CaiI CAGNNNCTG 1 cut(s) 220
CfoI GCGC 1 cut(s) 248
Csp6I GTAC 1 cut(s) 296
CviAII CATG 4 cut(s) 60, 116, 188, 341
CviJI RGCY 5 cut(s) 130, 174, 232, 291, 302
CviKI_1 RGCY 5 cut(s) 130, 174, 232, 291, 302
CviQI GTAC 1 cut(s) 296
DdeI CTNAG 2 cut(s) 203, 257
DinI GGCGCC 1 cut(s) 247
DpnI GATC 1 cut(s) 359
DpnII GATC 1 cut(s) 357
Eam1104I CTCTTC 1 cut(s) 329
EarI CTCTTC 1 cut(s) 329
Eco57I CTGAAG 2 cut(s) 125, 242
EcoT22I ATGCAT 1 cut(s) 189
EgeI GGCGCC 1 cut(s) 247
EheI GGCGCC 1 cut(s) 247
FaeI CATG 4 cut(s) 63, 119, 191, 344
FaiI YATR 7 cut(s) 61, 96, 117, 142, 144, 189, 342
FaqI GGGAC 1 cut(s) 255
FatI CATG 4 cut(s) 59, 115, 187, 340
FbaI TGATCA 1 cut(s) 357
Fnu4HI GCNGC 1 cut(s) 113
FokI GGATG 1 cut(s) 149
Fsp4HI GCNGC 1 cut(s) 113
FspBI CTAG 1 cut(s) 299
GlaI GCGC 1 cut(s) 247
GluI GCNGC 1 cut(s) 113
GsaI CCCAGC 1 cut(s) 276
HaeII RGCGCY 1 cut(s) 249
HaeIII GGCC 1 cut(s) 174
HapII CCGG 2 cut(s) 87, 240
HhaI GCGC 1 cut(s) 248
Hin1I GRCGYC 1 cut(s) 246
Hin1II CATG 4 cut(s) 63, 119, 191, 344
Hin6I GCGC 1 cut(s) 246
HinP1I GCGC 1 cut(s) 246
HindIII AAGCTT 1 cut(s) 128
HpaII CCGG 2 cut(s) 87, 240
Hpy188I TCNGA 2 cut(s) 105, 253
HpyAV CCTTC 1 cut(s) 217
HpyCH4V TGCA 2 cut(s) 59, 187
HpyF10VI GCNNNNNNNGC 1 cut(s) 171
HpyF3I CTNAG 2 cut(s) 203, 257
Hsp92I GRCGYC 1 cut(s) 246
Hsp92II CATG 4 cut(s) 63, 119, 191, 344
HspAI GCGC 1 cut(s) 246
KasI GGCGCC 1 cut(s) 245
Ksp22I TGATCA 1 cut(s) 357
Kzo9I GATC 1 cut(s) 357
LpnPI CCDG 5 cut(s) 100, 227, 253, 286, 322
Lsp1109I GCAGC 1 cut(s) 124
LweI GCATC 1 cut(s) 208
MaeI CTAG 1 cut(s) 299
MalI GATC 1 cut(s) 359
MboI GATC 1 cut(s) 357
MboII GAAGA 4 cut(s) 18, 118, 310, 316
MluCI AATT 2 cut(s) 11, 313
Mly113I GGCGCC 1 cut(s) 246
MmeI TCCRAC 3 cut(s) 99, 276, 331
MnlI CCTC 4 cut(s) 111, 247, 259, 332
Mph1103I ATGCAT 1 cut(s) 189
MseI TTAA 3 cut(s) 126, 132, 376
MspCI CTTAAG 2 cut(s) 125, 131
MspI CCGG 2 cut(s) 87, 240
Mva1269I GAATGC 1 cut(s) 189
MwoI GCNNNNNNNGC 1 cut(s) 171
NarI GGCGCC 1 cut(s) 246
NdeII GATC 1 cut(s) 357
NlaIII CATG 4 cut(s) 63, 119, 191, 344
NlaIV GGNNCC 1 cut(s) 247
NsiI ATGCAT 1 cut(s) 189
NspI RCATGY 2 cut(s) 63, 344
PctI GAATGC 1 cut(s) 189
PkrI GCNGC 1 cut(s) 114
PluTI GGCGCC 1 cut(s) 249
PshAI GACNNNNGTC 1 cut(s) 258
PspFI CCCAGC 1 cut(s) 272
PspN4I GGNNCC 1 cut(s) 247
PstNI CAGNNNCTG 1 cut(s) 220
RsaI GTAC 1 cut(s) 297
RsaNI GTAC 1 cut(s) 296
SaqAI TTAA 3 cut(s) 126, 132, 376
SatI GCNGC 1 cut(s) 113
Sau3AI GATC 1 cut(s) 357
SetI ASST 6 cut(s) 126, 132, 239, 258, 293, 304
SfaNI GCATC 1 cut(s) 208
SfoI GGCGCC 1 cut(s) 247
SmlI CTYRAG 2 cut(s) 125, 131
SmoI CTYRAG 2 cut(s) 125, 131
Sse9I AATT 2 cut(s) 11, 313
SspDI GGCGCC 1 cut(s) 245
SspI AATATT 1 cut(s) 21
SspMI CTAG 1 cut(s) 299
TasI AATT 2 cut(s) 11, 313
TatI WGTACW 1 cut(s) 295
Tru1I TTAA 3 cut(s) 126, 132, 376
Tru9I TTAA 3 cut(s) 126, 132, 376
TscAI CASTG 1 cut(s) 336
TseI GCWGC 1 cut(s) 112
TspDTI ATGAA 3 cut(s) 41, 167, 204
TspRI CASTG 1 cut(s) 336
Vha464I CTTAAG 2 cut(s) 125, 131
XceI RCATGY 2 cut(s) 63, 344
XspI CTAG 1 cut(s) 299
Zsp2I ATGCAT 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.