Prupe.7G264800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0015512
Physical Location & Seq
Reverse (-)
21877586 .. 21878509
924 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G264800.1

Sequence Viewer

Length: 366 bp
ATGAGGAGGAGAGAATTACTCATATGCTCCTTTTCCATTCTGTGCCTCCTGGCTCGGTCTACATGTGAAAGCGCTTTCACACCTACAACTGGAGATTCTGGACCTCTCAAGCAGCATGATCAACTTAAGGTTAAGGATATACATGAAATGACTACAAGATCAAGTAGAAAAAGCCTTGAAAGACCATATGGGAGAATGCATCAAGTTCATCATCTAAGGACTTCCCAGAAAGCAAGGGCAATCTATGGTGGTGCCTCTGACCTTAAGCGCCCCCGTACCAACCATAATGCAGCAAGCTCTGTACCTGTTAAACCCACCCTCGCTTTTTTCCTCTCGGCACTGGCCATGCTTATATTTTCTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.59

Weight (kDa)

10.48

Isoelectric Point (pI)

50.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g00750
malus_domestica MD02G1006100.v1.1 MD15G1150800.v1.1 MD15G1150900.v1.1
prunus_persica Prupe.7G264800_v2.0.a1
pyrus_communis pycom15g13520
rosa_chinensis RchiOBHm_Chr2g0085471
rosa_laevigata RLG00000015693
rosa_multiflora Rmu_sc0007908.1_g000010
rosa_roxburghii Rroxscaffold_2G00155360
rosa_rugosa Rorug01G0460600
rosa_samantha Rh2AG009100 Rh2BG010200 Rh2CG010700 Rh2DG011400
rosa_wichuraiana Rw2G000850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 251
AccI GTMKAC 1 cut(s) 59
AcoI YGGCCR 1 cut(s) 342
AfaI GTAC 2 cut(s) 277, 303
AfeI AGCGCT 1 cut(s) 73
AfiI CCNNNNNNNGG 1 cut(s) 89
AflII CTTAAG 2 cut(s) 125, 263
AflIII ACRYGT 1 cut(s) 62
AgsI TTSAA 1 cut(s) 179
AjnI CCWGG 1 cut(s) 48
AluBI AGCT 1 cut(s) 297
AluI AGCT 1 cut(s) 297
Aor51HI AGCGCT 1 cut(s) 73
AoxI GGCC 1 cut(s) 342
ApeKI GCWGC 2 cut(s) 112, 290
AspLEI GCGC 2 cut(s) 74, 270
AspS9I GGNCC 1 cut(s) 101
AvaII GGWCC 1 cut(s) 101
BalI TGGCCA 1 cut(s) 344
BanI GGYRCC 1 cut(s) 251
BbvI GCAGC 2 cut(s) 124, 302
BciT130I CCWGG 1 cut(s) 50
BclI TGATCA 1 cut(s) 118
BfoI RGCGCY 2 cut(s) 75, 271
BfrI CTTAAG 2 cut(s) 125, 263
BisI GCNGC 2 cut(s) 113, 291
BlsI GCNGC 2 cut(s) 114, 292
Bme1390I CCNGG 1 cut(s) 50
Bme18I GGWCC 1 cut(s) 101
BmgT120I GGNCC 1 cut(s) 101
BmiI GGNNCC 1 cut(s) 253
BmrFI CCNGG 1 cut(s) 50
BmsI GCATC 1 cut(s) 208
BplI GAGNNNNNCTC 1 cut(s) 35
BpmI CTGGAG 1 cut(s) 111
BpuEI CTTGAG 1 cut(s) 92
Bsc4I CCNNNNNNNGG 1 cut(s) 89
Bse1I ACTGG 2 cut(s) 94, 345
BseBI CCWGG 1 cut(s) 50
BseLI CCNNNNNNNGG 1 cut(s) 89
BseNI ACTGG 2 cut(s) 94, 345
BseRI GAGGAG 2 cut(s) 19, 22
BseXI GCAGC 2 cut(s) 124, 302
BshFI GGCC 1 cut(s) 344
BshNI GGYRCC 1 cut(s) 251
BslI CCNNNNNNNGG 1 cut(s) 89
BsmI GAATGC 1 cut(s) 201
BsnI GGCC 1 cut(s) 344
Bsp143I GATC 2 cut(s) 118, 158
BspANI GGCC 1 cut(s) 344
BspLI GGNNCC 1 cut(s) 253
BspT107I GGYRCC 1 cut(s) 251
BspTI CTTAAG 2 cut(s) 125, 263
BsrI ACTGG 2 cut(s) 94, 345
BssMI GATC 2 cut(s) 118, 158
Bst2UI CCWGG 1 cut(s) 50
BstAFI CTTAAG 2 cut(s) 125, 263
BstC8I GCNNGC 1 cut(s) 295
BstDEI CTNAG 1 cut(s) 215
BstH2I RGCGCY 2 cut(s) 75, 271
BstHHI GCGC 2 cut(s) 74, 270
BstKTI GATC 2 cut(s) 121, 161
BstMBI GATC 2 cut(s) 118, 158
BstNI CCWGG 1 cut(s) 50
BstNSI RCATGY 1 cut(s) 66
BstSCI CCNGG 1 cut(s) 48
BstV1I GCAGC 2 cut(s) 124, 302
BsuRI GGCC 1 cut(s) 344
BtsIMutI CAGTG 1 cut(s) 338
Cac8I GCNNGC 1 cut(s) 295
CfoI GCGC 2 cut(s) 74, 270
Cfr13I GGNCC 1 cut(s) 101
Csp6I GTAC 2 cut(s) 276, 302
CviAII CATG 4 cut(s) 63, 116, 143, 346
CviJI RGCY 4 cut(s) 53, 174, 297, 344
CviKI_1 RGCY 4 cut(s) 53, 174, 297, 344
CviQI GTAC 2 cut(s) 276, 302
DdeI CTNAG 1 cut(s) 215
DpnI GATC 2 cut(s) 120, 160
DpnII GATC 2 cut(s) 118, 158
EaeI YGGCCR 1 cut(s) 342
Eco47I GGWCC 1 cut(s) 101
Eco47III AGCGCT 1 cut(s) 73
EcoRII CCWGG 1 cut(s) 48
EcoT22I ATGCAT 1 cut(s) 201
FaeI CATG 4 cut(s) 66, 119, 146, 349
FatI CATG 4 cut(s) 62, 115, 142, 345
FauNDI CATATG 2 cut(s) 23, 187
FbaI TGATCA 1 cut(s) 118
FblI GTMKAC 1 cut(s) 59
Fnu4HI GCNGC 2 cut(s) 113, 291
Fsp4HI GCNGC 2 cut(s) 113, 291
GlaI GCGC 2 cut(s) 73, 269
GluI GCNGC 2 cut(s) 113, 291
GsuI CTGGAG 1 cut(s) 111
HaeII RGCGCY 2 cut(s) 75, 271
HaeIII GGCC 1 cut(s) 344
HhaI GCGC 2 cut(s) 74, 270
Hin1II CATG 4 cut(s) 66, 119, 146, 349
Hin6I GCGC 2 cut(s) 72, 268
HinP1I GCGC 2 cut(s) 72, 268
HinfI GANTC 1 cut(s) 95
Hpy166II GTNNAC 1 cut(s) 60
Hpy188I TCNGA 1 cut(s) 259
Hpy188III TCNNGA 1 cut(s) 99
Hpy8I GTNNAC 1 cut(s) 60
HpyCH4V TGCA 2 cut(s) 199, 290
HpyF3I CTNAG 1 cut(s) 215
Hsp92II CATG 4 cut(s) 66, 119, 146, 349
HspAI GCGC 2 cut(s) 72, 268
Ksp22I TGATCA 1 cut(s) 118
Kzo9I GATC 2 cut(s) 118, 158
LmnI GCTCC 1 cut(s) 32
LpnPI CCDG 7 cut(s) 35, 62, 75, 84, 239, 318, 326
Lsp1109I GCAGC 2 cut(s) 124, 302
LweI GCATC 1 cut(s) 208
MalI GATC 2 cut(s) 120, 160
MboI GATC 2 cut(s) 118, 158
MlsI TGGCCA 1 cut(s) 344
MluCI AATT 1 cut(s) 14
MluNI TGGCCA 1 cut(s) 344
MnlI CCTC 5 cut(s) 56, 114, 265, 329, 341
Mox20I TGGCCA 1 cut(s) 344
Mph1103I ATGCAT 1 cut(s) 201
MscI TGGCCA 1 cut(s) 344
MseI TTAA 4 cut(s) 126, 132, 264, 309
Msp20I TGGCCA 1 cut(s) 344
MspCI CTTAAG 2 cut(s) 125, 263
MspR9I CCNGG 1 cut(s) 50
Mva1269I GAATGC 1 cut(s) 201
MvaI CCWGG 1 cut(s) 50
NdeI CATATG 2 cut(s) 23, 187
NdeII GATC 2 cut(s) 118, 158
NlaIII CATG 4 cut(s) 66, 119, 146, 349
NlaIV GGNNCC 1 cut(s) 253
NmeAIII GCCGAG 1 cut(s) 314
NsiI ATGCAT 1 cut(s) 201
NspI RCATGY 1 cut(s) 66
PciI ACATGT 1 cut(s) 62
PctI GAATGC 1 cut(s) 201
PfeI GAWTC 1 cut(s) 95
PkrI GCNGC 2 cut(s) 114, 292
PscI ACATGT 1 cut(s) 62
Psp6I CCWGG 1 cut(s) 48
PspGI CCWGG 1 cut(s) 48
PspN4I GGNNCC 1 cut(s) 253
PspPI GGNCC 1 cut(s) 101
RsaI GTAC 2 cut(s) 277, 303
RsaNI GTAC 2 cut(s) 276, 302
SaqAI TTAA 4 cut(s) 126, 132, 264, 309
SatI GCNGC 2 cut(s) 113, 291
Sau3AI GATC 2 cut(s) 118, 158
Sau96I GGNCC 1 cut(s) 101
ScrFI CCNGG 1 cut(s) 50
SetI ASST 6 cut(s) 85, 106, 132, 264, 299, 307
SfaNI GCATC 1 cut(s) 208
SinI GGWCC 1 cut(s) 101
SmlI CTYRAG 3 cut(s) 107, 125, 263
SmoI CTYRAG 3 cut(s) 107, 125, 263
Sse9I AATT 1 cut(s) 14
StyD4I CCNGG 1 cut(s) 48
TaqII GACCGA 1 cut(s) 45
TasI AATT 1 cut(s) 14
TfiI GAWTC 1 cut(s) 95
Tru1I TTAA 4 cut(s) 126, 132, 264, 309
Tru9I TTAA 4 cut(s) 126, 132, 264, 309
TscAI CASTG 1 cut(s) 345
TseI GCWGC 2 cut(s) 112, 290
TspDTI ATGAA 2 cut(s) 159, 197
TspRI CASTG 1 cut(s) 345
Vha464I CTTAAG 2 cut(s) 125, 263
VpaK11BI GGWCC 1 cut(s) 101
XceI RCATGY 1 cut(s) 66
XmiI GTMKAC 1 cut(s) 59
Zsp2I ATGCAT 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.