MD15G1150900.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0015512
Physical Location & Seq
Forward (+)
11128938 .. 11129882
945 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1150900.v1.1.491

Sequence Viewer

Length: 372 bp
ATGAGAACAGAATTACTAATATGGTCGTTTTTTATTCTCTGTCTGGTTGTTCGTTCTGCATGCGAAAGCACTTCCAACCCTAAAACCGGAGGTTATACACCTCTGAAGAAGCAGCATGGTCACCCCAAACTTAAGGATGTATATGATATGATGAACAAATCAAGCAGAAAAGACCATCAAATAATGCATGAAGTTCAGCATTTAAGGATTTCCCAGAAAGCAAAGCCATCCTACGGTGGTGCCTCCGACCTTAGGCACACCCATCCCAGCAAGGGTGCAGCAAGCCCTTTACTAGCTAAACCCCCCACTTTCTTCCTCTTCGCAGTGCTCAGGCACGTTGCTGTTGGATCGGTCATCTTTGCTCTGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.8

Weight (kDa)

9.96

Isoelectric Point (pI)

45.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015512)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g00750
malus_domestica MD02G1006100.v1.1 MD15G1150800.v1.1 MD15G1150900.v1.1
prunus_persica Prupe.7G264800_v2.0.a1
pyrus_communis pycom15g13520
rosa_chinensis RchiOBHm_Chr2g0085471
rosa_laevigata RLG00000015693
rosa_multiflora Rmu_sc0007908.1_g000010
rosa_roxburghii Rroxscaffold_2G00155360
rosa_rugosa Rorug01G0460600
rosa_samantha Rh2AG009100 Rh2BG010200 Rh2CG010700 Rh2DG011400
rosa_wichuraiana Rw2G000850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 239
AclWI GGATC 1 cut(s) 355
AcuI CTGAAG 1 cut(s) 125
AfaI GTAC 1 cut(s) 368
AfiI CCNNNNNNNGG 4 cut(s) 86, 233, 252, 272
AflII CTTAAG 1 cut(s) 131
AluBI AGCT 1 cut(s) 296
AluI AGCT 1 cut(s) 296
Alw21I GWGCWC 1 cut(s) 330
AlwI GGATC 1 cut(s) 355
ApeKI GCWGC 2 cut(s) 112, 278
AsuHPI GGTGA 1 cut(s) 113
AxyI CCTNAGG 1 cut(s) 251
BanI GGYRCC 1 cut(s) 239
Bbv12I GWGCWC 1 cut(s) 330
BbvI GCAGC 2 cut(s) 124, 290
BccI CCATC 3 cut(s) 183, 235, 270
BfaI CTAG 1 cut(s) 293
BfrI CTTAAG 1 cut(s) 131
BisI GCNGC 2 cut(s) 113, 279
BlsI GCNGC 2 cut(s) 114, 280
BmiI GGNNCC 1 cut(s) 241
Bpu10I CCTNAGC 1 cut(s) 329
BsaWI WCCGGW 1 cut(s) 86
Bsc4I CCNNNNNNNGG 4 cut(s) 86, 233, 252, 272
Bse21I CCTNAGG 1 cut(s) 251
BseGI GGATG 3 cut(s) 142, 227, 262
BseLI CCNNNNNNNGG 4 cut(s) 86, 233, 252, 272
BseMII CTCAG 1 cut(s) 343
BseXI GCAGC 2 cut(s) 124, 290
BseYI CCCAGC 1 cut(s) 266
BsgI GTGCAG 1 cut(s) 297
BshNI GGYRCC 1 cut(s) 239
BsiHKAI GWGCWC 1 cut(s) 330
BsiSI CCGG 1 cut(s) 87
BslI CCNNNNNNNGG 4 cut(s) 86, 233, 252, 272
Bsp1286I GDGCHC 1 cut(s) 330
Bsp143I GATC 1 cut(s) 347
BspCNI CTCAG 1 cut(s) 342
BspLI GGNNCC 1 cut(s) 241
BspPI GGATC 1 cut(s) 355
BspT107I GGYRCC 1 cut(s) 239
BspTI CTTAAG 1 cut(s) 131
BssMI GATC 1 cut(s) 347
Bst4CI ACNGT 1 cut(s) 236
Bst6I CTCTTC 1 cut(s) 323
BstAFI CTTAAG 1 cut(s) 131
BstC8I GCNNGC 2 cut(s) 61, 283
BstDEI CTNAG 2 cut(s) 251, 329
BstEII GGTNACC 1 cut(s) 119
BstF5I GGATG 3 cut(s) 142, 227, 262
BstKTI GATC 1 cut(s) 350
BstMBI GATC 1 cut(s) 347
BstNSI RCATGY 1 cut(s) 63
BstPI GGTNACC 1 cut(s) 119
BstV1I GCAGC 2 cut(s) 124, 290
Bsu36I CCTNAGG 1 cut(s) 251
BtsCI GGATG 3 cut(s) 142, 227, 262
BtsI GCAGTG 1 cut(s) 330
BtsIMutI CAGTG 1 cut(s) 330
Cac8I GCNNGC 2 cut(s) 61, 283
Csp6I GTAC 1 cut(s) 367
CviAII CATG 3 cut(s) 60, 116, 188
CviJI RGCY 3 cut(s) 226, 285, 296
CviKI_1 RGCY 3 cut(s) 226, 285, 296
CviQI GTAC 1 cut(s) 367
DdeI CTNAG 2 cut(s) 251, 329
DpnI GATC 1 cut(s) 349
DpnII GATC 1 cut(s) 347
Eam1104I CTCTTC 1 cut(s) 323
EarI CTCTTC 1 cut(s) 323
Eco57I CTGAAG 1 cut(s) 125
Eco81I CCTNAGG 1 cut(s) 251
Eco91I GGTNACC 1 cut(s) 119
EcoO65I GGTNACC 1 cut(s) 119
EcoT22I ATGCAT 1 cut(s) 189
FaeI CATG 3 cut(s) 63, 119, 191
FaiI YATR 8 cut(s) 22, 61, 96, 117, 142, 144, 149, 189
FatI CATG 3 cut(s) 59, 115, 187
Fnu4HI GCNGC 2 cut(s) 113, 279
FokI GGATG 3 cut(s) 149, 214, 249
Fsp4HI GCNGC 2 cut(s) 113, 279
FspBI CTAG 1 cut(s) 293
GluI GCNGC 2 cut(s) 113, 279
GsaI CCCAGC 1 cut(s) 270
HapII CCGG 1 cut(s) 87
Hin1II CATG 3 cut(s) 63, 119, 191
HpaII CCGG 1 cut(s) 87
HphI GGTGA 1 cut(s) 113
Hpy188I TCNGA 2 cut(s) 105, 247
HpyCH4III ACNGT 1 cut(s) 236
HpyCH4IV ACGT 1 cut(s) 336
HpyCH4V TGCA 3 cut(s) 59, 187, 278
HpyF3I CTNAG 2 cut(s) 251, 329
HpySE526I ACGT 1 cut(s) 336
Hsp92II CATG 3 cut(s) 63, 119, 191
Kzo9I GATC 1 cut(s) 347
LpnPI CCDG 5 cut(s) 29, 100, 227, 280, 316
Lsp1109I GCAGC 2 cut(s) 124, 290
MaeI CTAG 1 cut(s) 293
MaeII ACGT 1 cut(s) 336
MaeIII GTNAC 1 cut(s) 119
MalI GATC 1 cut(s) 349
MboI GATC 1 cut(s) 347
MboII GAAGA 3 cut(s) 118, 304, 310
MhlI GDGCHC 1 cut(s) 330
MluCI AATT 1 cut(s) 11
MmeI TCCRAC 3 cut(s) 99, 270, 325
MnlI CCTC 4 cut(s) 83, 111, 253, 326
Mph1103I ATGCAT 1 cut(s) 189
MseI TTAA 2 cut(s) 132, 203
MspCI CTTAAG 1 cut(s) 131
MspI CCGG 1 cut(s) 87
NdeII GATC 1 cut(s) 347
NlaIII CATG 3 cut(s) 63, 119, 191
NlaIV GGNNCC 1 cut(s) 241
NmuCI GTSAC 1 cut(s) 119
NsiI ATGCAT 1 cut(s) 189
NspI RCATGY 1 cut(s) 63
PaeI GCATGC 1 cut(s) 63
PkrI GCNGC 2 cut(s) 114, 280
PspEI GGTNACC 1 cut(s) 119
PspFI CCCAGC 1 cut(s) 266
PspN4I GGNNCC 1 cut(s) 241
RsaI GTAC 1 cut(s) 368
RsaNI GTAC 1 cut(s) 367
SaqAI TTAA 2 cut(s) 132, 203
SatI GCNGC 2 cut(s) 113, 279
Sau3AI GATC 1 cut(s) 347
SduI GDGCHC 1 cut(s) 330
SetI ASST 5 cut(s) 94, 103, 252, 298, 339
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
SphI GCATGC 1 cut(s) 63
Sse9I AATT 1 cut(s) 11
SspMI CTAG 1 cut(s) 293
TaaI ACNGT 1 cut(s) 236
TaiI ACGT 1 cut(s) 339
TaqII GACCGA 1 cut(s) 340
TasI AATT 1 cut(s) 11
TatI WGTACW 1 cut(s) 366
Tru1I TTAA 2 cut(s) 132, 203
Tru9I TTAA 2 cut(s) 132, 203
TscAI CASTG 1 cut(s) 330
TseFI GTSAC 1 cut(s) 119
TseI GCWGC 2 cut(s) 112, 278
Tsp45I GTSAC 1 cut(s) 119
TspDTI ATGAA 2 cut(s) 167, 204
TspRI CASTG 1 cut(s) 330
Vha464I CTTAAG 1 cut(s) 131
XceI RCATGY 1 cut(s) 63
XspI CTAG 1 cut(s) 293
Zsp2I ATGCAT 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.