Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0012527

Physical Location & Seq

Genomic Coordinates Forward (+)

483442 .. 487074

Gene Structure 3633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g00971.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGCAGCCGCTGCTCGACTCAGGGGGGAGAATGGAGGAGGGAAGAGTGGAGGAGGATTCACCTCCTGTTTCACTGTGTGCCCGGATATCTGCCCTTAAGACAATGGCTTGGGAAGAATACAAAAGCAAGCCAATCTCGCATTGGATTCTTCTACTTCTAAGCAGTGCGGCCATGCTTGTAGCGTTTCCTGCATCTAGCCTTCTCTCTCGTATCTATTTTGCCAATGGTGGAACTAGCAAGTGGATCATTTCATGGGCGGCTGTTGCAGGGTGGCCTCTGACTGCTTTGATCTTACTGCCAACATACTTCATCCGCAAAACCACTCCTACACCACTGAATTTAACACTTATATTATCTTATGTTGTGCTAGGTTTCCTAAGTGCTGCTGACAATCTTATGTATGCATATGCATATGCTTACCTCCCAGCATCTACAGCTTCTCTCCTCGCATCATCATCTCTTGTATTTTCTGCACTGTTTGGATATCTACTGGTGAAGAACAAACTAAATGCTTCGATAGTAAATGCTATTGTGATCATTACTGCTGCTATGACCATCATCGCATTGGATTCTGATTCAGACAGATATGGGAATGTCACTGAGAAGCAATACATTCTAGGTTTCGTGTGGGATATTTTGGGATCTGCTCTCCATGGGCTCATTTTCGCTCTCTCAGAACTGGTTTTTGTGAAGCTACTTGGTAGAACGTCCTTTCATGTTGTGCTGGAGCAACAACTTGGGGTTTCCCTATTTGCGTTTATGTTTACCACCATTGGGATGATTTGGAACAAGGACTTTCAGGGAATGGCATCTGAGGCTAGAACTTTCGAGGGTGGTAAATCTTCTTATTACCAAGTTCTCATTTGGAGTACAATCACTTTCCAGTTGGGGGTGCAAGGAGCTACTGCTGTGCTTTTTCTGTCGTCCACGGTTCTTGCTGGTGTTCTCAATGCAGTTAGGGTACCAATCACAAGCATTGCAGCTGTGATATTGTTAAGCGATCCCATGAGCGGCTTGAAGATTCTCTCTTTGATCGTCACGTTTTGGGGATTTGGCTGCTACATCTATGGCAGCTCCTCTGGAAATAGAGATCCTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005345 GO:0005575 GO:0006810 GO:0006863 GO:0008150 GO:0015205 GO:0015851 GO:0016020 GO:0022857 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0072530 GO:1904823

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUNUT

Protein Analysis

367

Amino Acids

39.7

Weight (kDa)

7.7

Isoelectric Point (pI)

34.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUNUT	PF16913	40 - 352	2.2e-93	Purine nucleobase transmembrane transport
EamA	PF00892	53 - 178	6.1e-07	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24220 AT2G24220
fragaria_vesca	FvH4_1g00971 FvH4_1g00971
malus_domestica	MD15G1152200.v1.1
prunus_persica	Prupe.7G262500_v2.0.a1 Prupe.7G262500_v2.0.a1 Prupe.7G262500_v2.0.a1 Prupe.7G262500_v2.0.a1
pyrus_communis	pycom15g13680
rosa_chinensis	RchiOBHm_Chr2g0085711
rosa_multiflora	Rmu_co8380643.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155100
rosa_rugosa	Rorug01G0462800
rosa_samantha	Rh2AG011700 Rh2BG012300 Rh2CG013100 Rh2DG014200
rosa_wichuraiana	Rw2G001040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	961
AccB1I	GGYRCC	1 cut(s)	961
AccBSI	CCGCTC	1 cut(s)	1011
AciI	CCGC	5 cut(s)	8, 167, 257, 313, 1011
AclWI	GGATC	4 cut(s)	251, 649, 995, 1085
AcoI	YGGCCR	1 cut(s)	168
AcsI	RAATTY	1 cut(s)	337
AdeI	CACNNNGTG	1 cut(s)	77
AfaI	GTAC	2 cut(s)	871, 963
AfiI	CCNNNNNNNGG	3 cut(s)	774, 889, 1010
AflII	CTTAAG	1 cut(s)	95
AgsI	TTSAA	1 cut(s)	1018
AluBI	AGCT	5 cut(s)	437, 694, 902, 983, 1074
AluI	AGCT	5 cut(s)	437, 694, 902, 983, 1074
AlwI	GGATC	4 cut(s)	251, 649, 995, 1085
AlwNI	CAGNNNCTG	1 cut(s)	10
AoxI	GGCC	2 cut(s)	168, 272
ApeKI	GCWGC	7 cut(s)	4, 10, 383, 545, 980, 1056, 1071
ApoI	RAATTY	1 cut(s)	337
Asp718I	GGTACC	1 cut(s)	961
AsuC2I	CCSGG	1 cut(s)	82
AsuHPI	GGTGA	2 cut(s)	51, 505
BaeGI	GKGCMC	1 cut(s)	82
BanI	GGYRCC	1 cut(s)	961
BanII	GRGCYC	1 cut(s)	660
BbvI	GCAGC	6 cut(s)	16, 370, 532, 992, 1043, 1083
BccI	CCATC	1 cut(s)	563
BclI	TGATCA	1 cut(s)	534
BcnI	CCSGG	1 cut(s)	82
BfaI	CTAG	5 cut(s)	195, 234, 368, 617, 819
BfmI	CTRYAG	1 cut(s)	432
BfrI	CTTAAG	1 cut(s)	95
Bme1390I	CCNGG	1 cut(s)	82
BmiI	GGNNCC	1 cut(s)	963
BmrFI	CCNGG	1 cut(s)	82
BmsI	GCATC	4 cut(s)	200, 437, 458, 818
BpmI	CTGGAG	1 cut(s)	746
BpuMI	CCSGG	1 cut(s)	82
BsaJI	CCNNGG	2 cut(s)	652, 927
Bsc4I	CCNNNNNNNGG	3 cut(s)	774, 889, 1010
Bse1I	ACTGG	3 cut(s)	495, 684, 883
Bse3DI	GCAATG	1 cut(s)	975
BseDI	CCNNGG	2 cut(s)	652, 927
BseGI	GGATG	2 cut(s)	309, 783
BseLI	CCNNNNNNNGG	3 cut(s)	774, 889, 1010
BseMI	GCAATG	1 cut(s)	975
BseMII	CTCAG	4 cut(s)	33, 591, 687, 804
BseNI	ACTGG	3 cut(s)	495, 684, 883
BseRI	GAGGAG	4 cut(s)	50, 65, 434, 1066
BseSI	GKGCMC	1 cut(s)	82
BseXI	GCAGC	6 cut(s)	16, 370, 532, 992, 1043, 1083
BseYI	CCCAGC	1 cut(s)	424
BsgI	GTGCAG	1 cut(s)	456
BshFI	GGCC	2 cut(s)	170, 274
BshNI	GGYRCC	1 cut(s)	961
BsiSI	CCGG	1 cut(s)	82
BslI	CCNNNNNNNGG	3 cut(s)	774, 889, 1010
BsnI	GGCC	2 cut(s)	170, 274
Bsp1286I	GDGCHC	2 cut(s)	82, 660
Bsp143I	GATC	7 cut(s)	243, 288, 534, 641, 1000, 1032, 1090
Bsp19I	CCATGG	1 cut(s)	652
BspACI	CCGC	5 cut(s)	8, 167, 257, 313, 1011
BspANI	GGCC	2 cut(s)	170, 274
BspCNI	CTCAG	4 cut(s)	32, 592, 686, 805
BspLI	GGNNCC	1 cut(s)	963
BspPI	GGATC	4 cut(s)	251, 649, 995, 1085
BspT107I	GGYRCC	1 cut(s)	961
BspTI	CTTAAG	1 cut(s)	95
BsrBI	CCGCTC	1 cut(s)	1011
BsrDI	GCAATG	1 cut(s)	975
BsrI	ACTGG	3 cut(s)	495, 684, 883
BssECI	CCNNGG	2 cut(s)	652, 927
BssMI	GATC	7 cut(s)	243, 288, 534, 641, 1000, 1032, 1090
BssT1I	CCWWGG	1 cut(s)	652
Bst4CI	ACNGT	3 cut(s)	75, 477, 931
Bst6I	CTCTTC	1 cut(s)	37
BstAFI	CTTAAG	1 cut(s)	95
BstAPI	GCANNNNNTGC	1 cut(s)	10
BstC8I	GCNNGC	1 cut(s)	128
BstDEI	CTNAG	6 cut(s)	19, 158, 377, 600, 673, 813
BstDSI	CCRYGG	2 cut(s)	652, 927
BstF5I	GGATG	2 cut(s)	309, 783
BstKTI	GATC	7 cut(s)	246, 291, 537, 644, 1003, 1035, 1093
BstMBI	GATC	7 cut(s)	243, 288, 534, 641, 1000, 1032, 1090
BstMWI	GCNNNNNNNGC	6 cut(s)	10, 136, 188, 263, 434, 815
BstSCI	CCNGG	1 cut(s)	80
BstSFI	CTRYAG	1 cut(s)	432
BstSLI	GKGCMC	1 cut(s)	82
BstV1I	GCAGC	6 cut(s)	16, 370, 532, 992, 1043, 1083
BstX2I	RGATCY	2 cut(s)	641, 1090
BstYI	RGATCY	2 cut(s)	641, 1090
BsuRI	GGCC	2 cut(s)	170, 274
BtgI	CCRYGG	2 cut(s)	652, 927
BtgZI	GCGATG	1 cut(s)	544
BtsCI	GGATG	2 cut(s)	309, 783
BtsI	GCAGTG	1 cut(s)	169
BtsIMutI	CAGTG	5 cut(s)	71, 169, 332, 473, 597
Cac8I	GCNNGC	1 cut(s)	128
CaiI	CAGNNNCTG	1 cut(s)	10
Csp6I	GTAC	2 cut(s)	870, 962
CspCI	CAANNNNNGTGG	2 cut(s)	916, 951
CviAII	CATG	5 cut(s)	172, 252, 653, 716, 1006
CviQI	GTAC	2 cut(s)	870, 962
DdeI	CTNAG	6 cut(s)	19, 158, 377, 600, 673, 813
DpnI	GATC	7 cut(s)	245, 290, 536, 643, 1002, 1034, 1092
DpnII	GATC	7 cut(s)	243, 288, 534, 641, 1000, 1032, 1090
DraIII	CACNNNGTG	1 cut(s)	77
EaeI	YGGCCR	1 cut(s)	168
Eam1104I	CTCTTC	1 cut(s)	37
EarI	CTCTTC	1 cut(s)	37
Eco130I	CCWWGG	1 cut(s)	652
Eco24I	GRGCYC	1 cut(s)	660
Eco32I	GATATC	2 cut(s)	87, 485
EcoRV	GATATC	2 cut(s)	87, 485
EcoT14I	CCWWGG	1 cut(s)	652
EcoT22I	ATGCAT	2 cut(s)	406, 412
EcoT38I	GRGCYC	1 cut(s)	660
ErhI	CCWWGG	1 cut(s)	652
FaeI	CATG	5 cut(s)	175, 255, 656, 719, 1009
FatI	CATG	5 cut(s)	171, 251, 652, 715, 1005
FauNDI	CATATG	2 cut(s)	406, 412
FbaI	TGATCA	1 cut(s)	534
FokI	GGATG	2 cut(s)	296, 790
FriOI	GRGCYC	1 cut(s)	660
FspBI	CTAG	5 cut(s)	195, 234, 368, 617, 819
GsaI	CCCAGC	1 cut(s)	428
GsuI	CTGGAG	1 cut(s)	746
HaeIII	GGCC	2 cut(s)	170, 274
HapII	CCGG	1 cut(s)	82
Hin1II	CATG	5 cut(s)	175, 255, 656, 719, 1009
HinfI	GANTC	6 cut(s)	17, 56, 145, 569, 575, 1021
HpaII	CCGG	1 cut(s)	82
HphI	GGTGA	2 cut(s)	51, 505
Hpy166II	GTNNAC	2 cut(s)	765, 927
Hpy188I	TCNGA	5 cut(s)	279, 574, 580, 676, 814
Hpy188III	TCNNGA	1 cut(s)	1080
Hpy8I	GTNNAC	2 cut(s)	765, 927
HpyAV	CCTTC	1 cut(s)	209
HpyCH4III	ACNGT	3 cut(s)	75, 477, 931
HpyCH4IV	ACGT	2 cut(s)	707, 1040
HpyCH4V	TGCA	9 cut(s)	4, 191, 266, 404, 410, 473, 895, 953, 980
HpyF10VI	GCNNNNNNNGC	6 cut(s)	10, 136, 188, 263, 434, 815
HpyF3I	CTNAG	6 cut(s)	19, 158, 377, 600, 673, 813
HpySE526I	ACGT	2 cut(s)	707, 1040
Hsp92II	CATG	5 cut(s)	175, 255, 656, 719, 1009
KpnI	GGTACC	1 cut(s)	965
Ksp22I	TGATCA	1 cut(s)	534
Kzo9I	GATC	7 cut(s)	243, 288, 534, 641, 1000, 1032, 1090
LmnI	GCTCC	3 cut(s)	727, 899, 1079
Lsp1109I	GCAGC	6 cut(s)	16, 370, 532, 992, 1043, 1083
LweI	GCATC	4 cut(s)	200, 437, 458, 818
MaeI	CTAG	5 cut(s)	195, 234, 368, 617, 819
MaeII	ACGT	2 cut(s)	707, 1040
MaeIII	GTNAC	2 cut(s)	595, 1036
MalI	GATC	7 cut(s)	245, 290, 536, 643, 1002, 1034, 1092
MbiI	CCGCTC	1 cut(s)	1011
MboI	GATC	7 cut(s)	243, 288, 534, 641, 1000, 1032, 1090
MboII	GAAGA	6 cut(s)	54, 125, 140, 508, 834, 1030
MflI	RGATCY	2 cut(s)	641, 1090
MhlI	GDGCHC	2 cut(s)	82, 660
MluCI	AATT	1 cut(s)	337
MlyI	GAGTC	1 cut(s)	11
Mph1103I	ATGCAT	2 cut(s)	406, 412
MseI	TTAA	3 cut(s)	96, 341, 995
MslI	CAYNNNNRTG	1 cut(s)	776
MspA1I	CMGCKG	2 cut(s)	10, 983
MspCI	CTTAAG	1 cut(s)	95
MspI	CCGG	1 cut(s)	82
MspR9I	CCNGG	1 cut(s)	82
MwoI	GCNNNNNNNGC	6 cut(s)	10, 136, 188, 263, 434, 815
NciI	CCSGG	1 cut(s)	82
NcoI	CCATGG	1 cut(s)	652
NdeI	CATATG	2 cut(s)	406, 412
NdeII	GATC	7 cut(s)	243, 288, 534, 641, 1000, 1032, 1090
NlaIII	CATG	5 cut(s)	175, 255, 656, 719, 1009
NlaIV	GGNNCC	1 cut(s)	963
NmuCI	GTSAC	2 cut(s)	595, 1036
NsiI	ATGCAT	2 cut(s)	406, 412
PfeI	GAWTC	5 cut(s)	56, 145, 569, 575, 1021
PleI	GAGTC	1 cut(s)	11
PpsI	GAGTC	1 cut(s)	11
PspFI	CCCAGC	1 cut(s)	424
PspN4I	GGNNCC	1 cut(s)	963
PstNI	CAGNNNCTG	1 cut(s)	10
PsuI	RGATCY	2 cut(s)	641, 1090
PvuII	CAGCTG	1 cut(s)	983
RsaI	GTAC	2 cut(s)	871, 963
RsaNI	GTAC	2 cut(s)	870, 962
RseI	CAYNNNNRTG	1 cut(s)	776
SaqAI	TTAA	3 cut(s)	96, 341, 995
Sau3AI	GATC	7 cut(s)	243, 288, 534, 641, 1000, 1032, 1090
SchI	GAGTC	1 cut(s)	11
ScrFI	CCNGG	1 cut(s)	82
SduI	GDGCHC	2 cut(s)	82, 660
SfaNI	GCATC	4 cut(s)	200, 437, 458, 818
SfcI	CTRYAG	1 cut(s)	432
SmiMI	CAYNNNNRTG	1 cut(s)	776
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	1 cut(s)	337
SsiI	CCGC	5 cut(s)	8, 167, 257, 313, 1011
SspMI	CTAG	5 cut(s)	195, 234, 368, 617, 819
StyD4I	CCNGG	1 cut(s)	80
StyI	CCWWGG	1 cut(s)	652
TaaI	ACNGT	3 cut(s)	75, 477, 931
TaiI	ACGT	2 cut(s)	710, 1043
TaqI	TCGA	3 cut(s)	15, 515, 828
TasI	AATT	1 cut(s)	337
TatI	WGTACW	1 cut(s)	869
TauI	GCSGC	4 cut(s)	10, 170, 260, 1014
TfiI	GAWTC	5 cut(s)	56, 145, 569, 575, 1021
Tru1I	TTAA	3 cut(s)	96, 341, 995
Tru9I	TTAA	3 cut(s)	96, 341, 995
TscAI	CASTG	5 cut(s)	78, 169, 339, 480, 604
TseFI	GTSAC	2 cut(s)	595, 1036
TseI	GCWGC	7 cut(s)	4, 10, 383, 545, 980, 1056, 1071
Tsp45I	GTSAC	2 cut(s)	595, 1036
TspDTI	ATGAA	4 cut(s)	240, 298, 704, 1086
TspRI	CASTG	5 cut(s)	78, 169, 339, 480, 604
Vha464I	CTTAAG	1 cut(s)	95
XapI	RAATTY	1 cut(s)	337
XcmI	CCANNNNNNNNNTGG	2 cut(s)	138, 562
XspI	CTAG	5 cut(s)	195, 234, 368, 617, 819
Zsp2I	ATGCAT	2 cut(s)	406, 412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.