Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0012527

Physical Location & Seq

Genomic Coordinates Forward (+)

11275277 .. 11277754

Gene Structure 2478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1152200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGCAGCCGCTGCTCGAGTCGGGGGAAAGAATGGAGGAGGAATCGCCAAAACCTCCCGTTTCATTATGGGGCCGGGTTTCTGCCATTGAGACAAGGGCTCGGGAAGCATACAAAAGCAAGCCAATCTCGCATTGGATTCTCCTTGTCCTTAGCAGTGGGGGCATGCTTATAGCGTTTCCTGCATCTAGTCTTCTTTCTCGTGTGTATTATGCCAATGGAGGCACTAGCAAGTGGATCATTTCATGGGTTGCCGTAGCAGGGTGGCCTCTGATTGCTTTAATCTTATTGCCTACGTACTTCGTCTGCAAAACGACCCCTACTCCCCTGAATTTAAAACTTACTGTTTCTTATATTGTGCTAGGTCTATTAAGTGCCGCTGACAATCTTATGTATGCTTATGCATATGCTTACCTCCCAGCATCTACCGCTTCTCTTCTTGCATCATCATCTCTAGTATTTTCTGCATTATTCGGGCACCTACTTGTGAACAACAAACTTAATGCAGCGATAGTAAATGCTATTTTTATCATTACAGCTGCTATGACCATCATTGCTCTGGATTCAGATTCAGACAGATATGGAAATGTAACTGATAAGCAATACATTCTGGGATTTGTGTGGGATATTTTAGGATCAGCACTCCACGGGCTTATTTTCGCTCTTTCAGAGCTGGTTTTCGTGAAGCTACTTGGTAGAAGGTCCTTCCATGTTGTGTTGGAGCAGCAAGTCATGGTTTCTTTCTTTGCTTTCGTGTTCACCACTATCGGAGTAATCGTGAATAAGGATTTTCAGGGAATGAAAAACGAGGCCGGAATTTTCAAGGGCGGTAAGTCTGCTTATTACCTTGTTCTCATTTGGAGTGTCATCAGTTTCCAGTTAGGGGTATTAGGGGCTACTGCTGTGCTTTTCTTATCTTCCACCGTTCTCGCCGGTGTGCTGAACGCAGTAAGGGTTCCCCTCACCAGCATTGCAGCTGTCATATTGTTAAAAGACCCGATGAGCGGGTTGAAGATCCTCTCTCTGATTGTTACGTTTTGGGGCTTTGGCTGCTACATCTATGGCAGTTCCTCTGCATCTTCAAGTAGAGATTCCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005345 GO:0005575 GO:0006810 GO:0006863 GO:0008150 GO:0015205 GO:0015851 GO:0016020 GO:0022857 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0072530 GO:1904823

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUNUT

Protein Analysis

366

Amino Acids

39.48

Weight (kDa)

9.16

Isoelectric Point (pI)

35.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUNUT	PF16913	47 - 358	6.1e-93	Purine nucleobase transmembrane transport
EamA	PF00892	89 - 185	4.6e-06	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24220 AT2G24220
fragaria_vesca	FvH4_1g00971 FvH4_1g00971
malus_domestica	MD15G1152200.v1.1
prunus_persica	Prupe.7G262500_v2.0.a1 Prupe.7G262500_v2.0.a1 Prupe.7G262500_v2.0.a1 Prupe.7G262500_v2.0.a1
pyrus_communis	pycom15g13680
rosa_chinensis	RchiOBHm_Chr2g0085711
rosa_multiflora	Rmu_co8380643.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155100
rosa_rugosa	Rorug01G0462800
rosa_samantha	Rh2AG011700 Rh2BG012300 Rh2CG013100 Rh2DG014200
rosa_wichuraiana	Rw2G001040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	474
AccBSI	CCGCTC	1 cut(s)	1002
AciI	CCGC	5 cut(s)	8, 375, 426, 825, 1002
AclWI	GGATC	3 cut(s)	242, 640, 1006
AcsI	RAATTY	2 cut(s)	328, 813
AfaI	GTAC	1 cut(s)	296
AfiI	CCNNNNNNNGG	3 cut(s)	258, 880, 1001
AgsI	TTSAA	3 cut(s)	820, 1009, 1080
AluBI	AGCT	4 cut(s)	536, 670, 685, 974
AluI	AGCT	4 cut(s)	536, 670, 685, 974
Alw26I	GTCTC	1 cut(s)	83
AlwI	GGATC	3 cut(s)	242, 640, 1006
AlwNI	CAGNNNCTG	1 cut(s)	10
Ama87I	CYCGRG	2 cut(s)	14, 99
AoxI	GGCC	3 cut(s)	70, 263, 807
ApeKI	GCWGC	7 cut(s)	4, 10, 503, 536, 721, 971, 1047
ApoI	RAATTY	2 cut(s)	328, 813
AspS9I	GGNCC	2 cut(s)	70, 699
AsuC2I	CCSGG	1 cut(s)	74
AsuHPI	GGTGA	2 cut(s)	748, 952
AvaI	CYCGRG	2 cut(s)	14, 99
AvaII	GGWCC	1 cut(s)	699
BaeGI	GKGCMC	1 cut(s)	477
BanI	GGYRCC	1 cut(s)	474
BanII	GRGCYC	1 cut(s)	100
BauI	CACGAG	1 cut(s)	198
BbsI	GAAGAC	1 cut(s)	182
BbvI	GCAGC	6 cut(s)	16, 515, 523, 733, 983, 1034
BccI	CCATC	1 cut(s)	554
BceAI	ACGGC	1 cut(s)	236
BcnI	CCSGG	1 cut(s)	74
BcoDI	GTCTC	1 cut(s)	83
BfaI	CTAG	4 cut(s)	186, 225, 359, 452
BisI	GCNGC	9 cut(s)	5, 8, 11, 375, 504, 537, 722, 972, 1048
BlsI	GCNGC	9 cut(s)	6, 9, 12, 376, 505, 538, 723, 973, 1049
Bme1390I	CCNGG	1 cut(s)	74
Bme18I	GGWCC	1 cut(s)	699
BmeT110I	CYCGRG	2 cut(s)	14, 99
BmgT120I	GGNCC	2 cut(s)	70, 699
BmiI	GGNNCC	3 cut(s)	71, 476, 954
BmrFI	CCNGG	1 cut(s)	74
BmsI	GCATC	4 cut(s)	191, 428, 449, 1082
BpiI	GAAGAC	1 cut(s)	182
Bpu10I	CCTNAGC	1 cut(s)	149
BpuMI	CCSGG	1 cut(s)	74
BsaAI	YACGTR	1 cut(s)	294
BsaJI	CCNNGG	1 cut(s)	643
BsaXI	ACNNNNNCTCC	4 cut(s)	304, 334, 759, 789
Bsc4I	CCNNNNNNNGG	3 cut(s)	258, 880, 1001
Bse118I	RCCGGY	1 cut(s)	929
Bse1I	ACTGG	1 cut(s)	874
Bse3DI	GCAATG	2 cut(s)	549, 966
BseDI	CCNNGG	1 cut(s)	643
BseLI	CCNNNNNNNGG	3 cut(s)	258, 880, 1001
BseMI	GCAATG	2 cut(s)	549, 966
BseNI	ACTGG	1 cut(s)	874
BseRI	GAGGAG	1 cut(s)	50
BseSI	GKGCMC	1 cut(s)	477
BseXI	GCAGC	6 cut(s)	16, 515, 523, 733, 983, 1034
BseYI	CCCAGC	1 cut(s)	415
BshFI	GGCC	3 cut(s)	72, 265, 809
BshNI	GGYRCC	1 cut(s)	474
BsiHKCI	CYCGRG	2 cut(s)	14, 99
BsiSI	CCGG	3 cut(s)	73, 810, 930
BslI	CCNNNNNNNGG	3 cut(s)	258, 880, 1001
BsmAI	GTCTC	1 cut(s)	83
BsnI	GGCC	3 cut(s)	72, 265, 809
BsoBI	CYCGRG	2 cut(s)	14, 99
Bsp1286I	GDGCHC	2 cut(s)	100, 477
Bsp143I	GATC	3 cut(s)	234, 632, 1011
BspACI	CCGC	5 cut(s)	8, 375, 426, 825, 1002
BspANI	GGCC	3 cut(s)	72, 265, 809
BspLI	GGNNCC	3 cut(s)	71, 476, 954
BspPI	GGATC	3 cut(s)	242, 640, 1006
BspT107I	GGYRCC	1 cut(s)	474
BsrBI	CCGCTC	1 cut(s)	1002
BsrDI	GCAATG	2 cut(s)	549, 966
BsrFI	RCCGGY	1 cut(s)	929
BsrI	ACTGG	1 cut(s)	874
BssAI	RCCGGY	1 cut(s)	929
BssECI	CCNNGG	1 cut(s)	643
BssMI	GATC	3 cut(s)	234, 632, 1011
BssSI	CACGAG	1 cut(s)	198
Bst2BI	CACGAG	1 cut(s)	198
Bst4CI	ACNGT	2 cut(s)	343, 922
Bst6I	CTCTTC	1 cut(s)	438
BstAPI	GCANNNNNTGC	1 cut(s)	10
BstBAI	YACGTR	1 cut(s)	294
BstC8I	GCNNGC	2 cut(s)	119, 164
BstDEI	CTNAG	1 cut(s)	149
BstDSI	CCRYGG	1 cut(s)	643
BstKTI	GATC	3 cut(s)	237, 635, 1014
BstMAI	GTCTC	1 cut(s)	83
BstMBI	GATC	3 cut(s)	234, 632, 1011
BstMWI	GCNNNNNNNGC	7 cut(s)	10, 104, 127, 159, 179, 425, 1047
BstNSI	RCATGY	1 cut(s)	166
BstSCI	CCNGG	1 cut(s)	72
BstSLI	GKGCMC	1 cut(s)	477
BstSNI	TACGTA	1 cut(s)	294
BstV1I	GCAGC	6 cut(s)	16, 515, 523, 733, 983, 1034
BstV2I	GAAGAC	1 cut(s)	182
BstX2I	RGATCY	1 cut(s)	1011
BstYI	RGATCY	1 cut(s)	1011
BsuRI	GGCC	3 cut(s)	72, 265, 809
BtgI	CCRYGG	1 cut(s)	643
BtsI	GCAGTG	1 cut(s)	160
BtsIMutI	CAGTG	1 cut(s)	160
Cac8I	GCNNGC	2 cut(s)	119, 164
CaiI	CAGNNNCTG	1 cut(s)	10
Cfr10I	RCCGGY	1 cut(s)	929
Cfr13I	GGNCC	2 cut(s)	70, 699
Csp6I	GTAC	1 cut(s)	295
CviAII	CATG	4 cut(s)	163, 243, 707, 730
CviQI	GTAC	1 cut(s)	295
DdeI	CTNAG	1 cut(s)	149
DpnI	GATC	3 cut(s)	236, 634, 1013
DpnII	GATC	3 cut(s)	234, 632, 1011
DraI	TTTAAA	1 cut(s)	333
Eam1104I	CTCTTC	1 cut(s)	438
EarI	CTCTTC	1 cut(s)	438
Eco105I	TACGTA	1 cut(s)	294
Eco24I	GRGCYC	1 cut(s)	100
Eco47I	GGWCC	1 cut(s)	699
Eco88I	CYCGRG	2 cut(s)	14, 99
EcoO109I	RGGNCCY	1 cut(s)	699
EcoT22I	ATGCAT	1 cut(s)	403
EcoT38I	GRGCYC	1 cut(s)	100
FaeI	CATG	4 cut(s)	166, 246, 710, 733
FatI	CATG	4 cut(s)	162, 242, 706, 729
FauI	CCCGC	1 cut(s)	995
FauNDI	CATATG	1 cut(s)	403
Fnu4HI	GCNGC	9 cut(s)	5, 8, 11, 375, 504, 537, 722, 972, 1048
FriOI	GRGCYC	1 cut(s)	100
Fsp4HI	GCNGC	9 cut(s)	5, 8, 11, 375, 504, 537, 722, 972, 1048
FspBI	CTAG	4 cut(s)	186, 225, 359, 452
GluI	GCNGC	9 cut(s)	5, 8, 11, 375, 504, 537, 722, 972, 1048
GsaI	CCCAGC	1 cut(s)	419
HaeIII	GGCC	3 cut(s)	72, 265, 809
HapII	CCGG	3 cut(s)	73, 810, 930
Hin1II	CATG	4 cut(s)	166, 246, 710, 733
HinfI	GANTC	6 cut(s)	17, 41, 136, 560, 566, 1088
HpaII	CCGG	3 cut(s)	73, 810, 930
HphI	GGTGA	2 cut(s)	748, 952
Hpy166II	GTNNAC	2 cut(s)	487, 756
Hpy188I	TCNGA	6 cut(s)	270, 565, 571, 667, 767, 1023
Hpy188III	TCNNGA	5 cut(s)	101, 557, 679, 775, 1095
Hpy8I	GTNNAC	2 cut(s)	487, 756
HpyAV	CCTTC	2 cut(s)	690, 712
HpyCH4III	ACNGT	2 cut(s)	343, 922
HpyCH4IV	ACGT	2 cut(s)	293, 1031
HpyCH4V	TGCA	9 cut(s)	4, 182, 306, 401, 440, 464, 503, 971, 1073
HpyF10VI	GCNNNNNNNGC	7 cut(s)	10, 104, 127, 159, 179, 425, 1047
HpyF3I	CTNAG	1 cut(s)	149
HpySE526I	ACGT	2 cut(s)	293, 1031
Hsp92II	CATG	4 cut(s)	166, 246, 710, 733
Kzo9I	GATC	3 cut(s)	234, 632, 1011
LmnI	GCTCC	1 cut(s)	718
Lsp1109I	GCAGC	6 cut(s)	16, 515, 523, 733, 983, 1034
LweI	GCATC	4 cut(s)	191, 428, 449, 1082
MaeI	CTAG	4 cut(s)	186, 225, 359, 452
MaeII	ACGT	2 cut(s)	293, 1031
MaeIII	GTNAC	2 cut(s)	586, 1027
MalI	GATC	3 cut(s)	236, 634, 1013
MbiI	CCGCTC	1 cut(s)	1002
MboI	GATC	3 cut(s)	234, 632, 1011
MboII	GAAGA	5 cut(s)	182, 425, 906, 1021, 1068
MflI	RGATCY	1 cut(s)	1011
MhlI	GDGCHC	2 cut(s)	100, 477
MluCI	AATT	2 cut(s)	328, 813
MlyI	GAGTC	1 cut(s)	26
MmeI	TCCRAC	1 cut(s)	696
Mph1103I	ATGCAT	1 cut(s)	403
MseI	TTAA	5 cut(s)	278, 332, 368, 498, 986
MspA1I	CMGCKG	4 cut(s)	10, 377, 536, 974
MspI	CCGG	3 cut(s)	73, 810, 930
MspR9I	CCNGG	1 cut(s)	74
MwoI	GCNNNNNNNGC	7 cut(s)	10, 104, 127, 159, 179, 425, 1047
NciI	CCSGG	1 cut(s)	74
NdeI	CATATG	1 cut(s)	403
NdeII	GATC	3 cut(s)	234, 632, 1011
NlaIII	CATG	4 cut(s)	166, 246, 710, 733
NlaIV	GGNNCC	3 cut(s)	71, 476, 954
NsiI	ATGCAT	1 cut(s)	403
NspI	RCATGY	1 cut(s)	166
PaeI	GCATGC	1 cut(s)	166
PaeR7I	CTCGAG	1 cut(s)	14
PcsI	WCGNNNNNNNCGW	1 cut(s)	771
PfeI	GAWTC	5 cut(s)	41, 136, 560, 566, 1088
PkrI	GCNGC	9 cut(s)	6, 9, 12, 376, 505, 538, 723, 973, 1049
PleI	GAGTC	1 cut(s)	25
PpsI	GAGTC	1 cut(s)	25
Ppu21I	YACGTR	1 cut(s)	294
PpuMI	RGGWCCY	1 cut(s)	699
Psp5II	RGGWCCY	1 cut(s)	699
PspFI	CCCAGC	1 cut(s)	415
PspN4I	GGNNCC	3 cut(s)	71, 476, 954
PspPI	GGNCC	2 cut(s)	70, 699
PspPPI	RGGWCCY	1 cut(s)	699
PspXI	VCTCGAGB	1 cut(s)	14
PstNI	CAGNNNCTG	1 cut(s)	10
PsuI	RGATCY	1 cut(s)	1011
PvuII	CAGCTG	2 cut(s)	536, 974
RsaI	GTAC	1 cut(s)	296
RsaNI	GTAC	1 cut(s)	295
SaqAI	TTAA	5 cut(s)	278, 332, 368, 498, 986
SatI	GCNGC	9 cut(s)	5, 8, 11, 375, 504, 537, 722, 972, 1048
Sau3AI	GATC	3 cut(s)	234, 632, 1011
Sau96I	GGNCC	2 cut(s)	70, 699
SchI	GAGTC	1 cut(s)	26
ScrFI	CCNGG	1 cut(s)	74
SduI	GDGCHC	2 cut(s)	100, 477
SfaNI	GCATC	4 cut(s)	191, 428, 449, 1082
Sfr274I	CTCGAG	1 cut(s)	14
SgrAI	CRCCGGYG	1 cut(s)	929
SinI	GGWCC	1 cut(s)	699
SlaI	CTCGAG	1 cut(s)	14
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
SnaBI	TACGTA	1 cut(s)	294
SphI	GCATGC	1 cut(s)	166
Sse9I	AATT	2 cut(s)	328, 813
SsiI	CCGC	5 cut(s)	8, 375, 426, 825, 1002
SspMI	CTAG	4 cut(s)	186, 225, 359, 452
StyD4I	CCNGG	1 cut(s)	72
TaaI	ACNGT	2 cut(s)	343, 922
TaiI	ACGT	2 cut(s)	296, 1034
TaqI	TCGA	1 cut(s)	15
TasI	AATT	2 cut(s)	328, 813
TauI	GCSGC	2 cut(s)	10, 377
TfiI	GAWTC	5 cut(s)	41, 136, 560, 566, 1088
Tru1I	TTAA	5 cut(s)	278, 332, 368, 498, 986
Tru9I	TTAA	5 cut(s)	278, 332, 368, 498, 986
TscAI	CASTG	1 cut(s)	160
TseI	GCWGC	7 cut(s)	4, 10, 503, 536, 721, 971, 1047
TspDTI	ATGAA	3 cut(s)	51, 231, 812
TspRI	CASTG	1 cut(s)	160
VpaK11BI	GGWCC	1 cut(s)	699
XapI	RAATTY	2 cut(s)	328, 813
XceI	RCATGY	1 cut(s)	166
XcmI	CCANNNNNNNNNTGG	2 cut(s)	129, 553
XhoI	CTCGAG	1 cut(s)	14
XspI	CTAG	4 cut(s)	186, 225, 359, 452
Zsp2I	ATGCAT	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.