Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0012527

Physical Location & Seq

Genomic Coordinates Forward (+)

934593 .. 938166

Gene Structure 3574 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG011700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGATGAGGATTCACCAAATCCTCCCGTTTCATTGCATGCCCGGATTTCAGCCCTTAAGACAATGGCTTGGGAAGAATACAAAAGCAAGCCAATCTCGCATTGGATTCTTCTACTTCTAAGCAGTGCGGCAATGCTTGTAGCGTTTCCTGCATCTAGCCTTCTATCTCGTATCTATTTTGCCAATGGCGGCACTAGCAAGTGGATCATTTCATGGGTGGCTGTTGCAGGGTGGCCTCTGACTGCTTTGATCTTACTGCCTACATACTTCTTCTGCAAAACCTTTCCTACCCCTCTGAATTTAAAACTTACATTATCTTATGCTTTCCTAGGTTTCCTAAGTGCTGCTGACAATCTTATGTATGCATATGCATATGCATACCTCCCAGCATCTACTGCTTCTCTTCTTGCATCATCATCTCTTGTATTTTCTGCATTGTTTGGATATATACTGGTGAAGAACAAACTCAATGCTTCAATAGTAAATGCTATTGTGATCATTACTGCTGCTATGACCATCATTGCATTGGATTCTGATTCAGACAGATATGACTATGTCACTGAGAAGCAATACATTCTAGGTTTCGTGTGGGATATTTTGGGATCTGCTCTCCATGGGCTCATTTTTGCTCTCTCAGAGCTAGTTTTTGTGAAGCTACTTGGTAGAAGGTCCTTCCATGTTGTGCTGGAGCAACAACTCGGGGTTTCCCTATTTGCGTTTCTGTTTACCACGATCGGGGTCATTTGGAATAAGGATTTTCAGGGAATGGCATCTGAGGCAAGAAGTTTCGAGGGTGGTAAATCTTCTTATTACCTTGTTCTCATTTGGAGTACAATCACTTTCCAGTTGGGGGTGTTAGGAGCTACTGCTGTGCTTTTTCTGTCTTCCACCGTTCTCGCTGGTGTTCTCAATGCAGTAAGGGTACCACTCACAAGCATTGCAGCTGTGATTTTGTTAAACGATCCCATGAGCGGCTTAAAGATCCTCTCTTTGATAGTTACATTTTGGGGATTTGGCTGCTACATCTATGGCAGCTCCTCTGGAAGCAGAGATCCTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005345 GO:0005575 GO:0006810 GO:0006863 GO:0008150 GO:0015205 GO:0015851 GO:0016020 GO:0022857 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0072530 GO:1904823

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUNUT

Protein Analysis

353

Amino Acids

38.47

Weight (kDa)

8.38

Isoelectric Point (pI)

39.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUNUT	PF16913	37 - 347	3.1e-93	Purine nucleobase transmembrane transport
EamA	PF00892	52 - 175	1.2e-06	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24220 AT2G24220
fragaria_vesca	FvH4_1g00971 FvH4_1g00971
malus_domestica	MD15G1152200.v1.1
prunus_persica	Prupe.7G262500_v2.0.a1 Prupe.7G262500_v2.0.a1 Prupe.7G262500_v2.0.a1 Prupe.7G262500_v2.0.a1
pyrus_communis	pycom15g13680
rosa_chinensis	RchiOBHm_Chr2g0085711
rosa_multiflora	Rmu_co8380643.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155100
rosa_rugosa	Rorug01G0462800
rosa_samantha	Rh2AG011700 Rh2BG012300 Rh2CG013100 Rh2DG014200
rosa_wichuraiana	Rw2G001040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	922
AccB1I	GGYRCC	1 cut(s)	922
AccBSI	CCGCTC	1 cut(s)	972
AciI	CCGC	3 cut(s)	128, 189, 972
AclWI	GGATC	5 cut(s)	212, 610, 956, 976, 1046
AcsI	RAATTY	1 cut(s)	298
AfaI	GTAC	2 cut(s)	832, 924
AfiI	CCNNNNNNNGG	3 cut(s)	735, 850, 971
AflII	CTTAAG	1 cut(s)	56
AgsI	TTSAA	1 cut(s)	477
AluBI	AGCT	5 cut(s)	640, 655, 863, 944, 1035
AluI	AGCT	5 cut(s)	640, 655, 863, 944, 1035
AlwI	GGATC	5 cut(s)	212, 610, 956, 976, 1046
Ama87I	CYCGRG	1 cut(s)	698
AoxI	GGCC	1 cut(s)	233
ApeKI	GCWGC	5 cut(s)	344, 506, 941, 1017, 1032
ApoI	RAATTY	1 cut(s)	298
Asp718I	GGTACC	1 cut(s)	922
AspA2I	CCTAGG	1 cut(s)	328
AspS9I	GGNCC	1 cut(s)	669
AsuC2I	CCSGG	1 cut(s)	43
AsuHPI	GGTGA	2 cut(s)	6, 466
AvaI	CYCGRG	1 cut(s)	698
AvaII	GGWCC	1 cut(s)	669
AvrII	CCTAGG	1 cut(s)	328
BanI	GGYRCC	1 cut(s)	922
BanII	GRGCYC	1 cut(s)	621
BbsI	GAAGAC	1 cut(s)	876
BbvI	GCAGC	5 cut(s)	331, 493, 953, 1004, 1044
BccI	CCATC	1 cut(s)	524
BclI	TGATCA	1 cut(s)	495
BcnI	CCSGG	1 cut(s)	43
BfaI	CTAG	5 cut(s)	156, 195, 329, 578, 641
BfrI	CTTAAG	1 cut(s)	56
BisI	GCNGC	8 cut(s)	129, 190, 345, 507, 942, 973, 1018, 1033
BlnI	CCTAGG	1 cut(s)	328
BlsI	GCNGC	8 cut(s)	130, 191, 346, 508, 943, 974, 1019, 1034
Bme1390I	CCNGG	1 cut(s)	43
Bme18I	GGWCC	1 cut(s)	669
BmeT110I	CYCGRG	1 cut(s)	698
BmgT120I	GGNCC	1 cut(s)	669
BmiI	GGNNCC	1 cut(s)	924
BmrFI	CCNGG	1 cut(s)	43
BmsI	GCATC	4 cut(s)	161, 398, 419, 779
BpiI	GAAGAC	1 cut(s)	876
BpmI	CTGGAG	1 cut(s)	707
BpuMI	CCSGG	1 cut(s)	43
BsaJI	CCNNGG	2 cut(s)	328, 613
Bsc4I	CCNNNNNNNGG	3 cut(s)	735, 850, 971
Bse1I	ACTGG	2 cut(s)	456, 844
Bse3DI	GCAATG	4 cut(s)	32, 138, 519, 936
BseDI	CCNNGG	2 cut(s)	328, 613
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	3 cut(s)	735, 850, 971
BseMI	GCAATG	4 cut(s)	32, 138, 519, 936
BseMII	CTCAG	3 cut(s)	552, 648, 765
BseNI	ACTGG	2 cut(s)	456, 844
BseRI	GAGGAG	1 cut(s)	1027
BseXI	GCAGC	5 cut(s)	331, 493, 953, 1004, 1044
BseYI	CCCAGC	1 cut(s)	385
Bsh1285I	CGRYCG	1 cut(s)	735
BshFI	GGCC	1 cut(s)	235
BshNI	GGYRCC	1 cut(s)	922
BsiEI	CGRYCG	1 cut(s)	735
BsiHKCI	CYCGRG	1 cut(s)	698
BsiSI	CCGG	1 cut(s)	43
BslI	CCNNNNNNNGG	3 cut(s)	735, 850, 971
BsnI	GGCC	1 cut(s)	235
BsoBI	CYCGRG	1 cut(s)	698
Bsp1286I	GDGCHC	1 cut(s)	621
Bsp143I	GATC	8 cut(s)	204, 249, 495, 602, 732, 961, 981, 1051
Bsp19I	CCATGG	1 cut(s)	613
BspACI	CCGC	3 cut(s)	128, 189, 972
BspANI	GGCC	1 cut(s)	235
BspCNI	CTCAG	3 cut(s)	553, 647, 766
BspLI	GGNNCC	1 cut(s)	924
BspPI	GGATC	5 cut(s)	212, 610, 956, 976, 1046
BspT107I	GGYRCC	1 cut(s)	922
BspTI	CTTAAG	1 cut(s)	56
BsrBI	CCGCTC	1 cut(s)	972
BsrDI	GCAATG	4 cut(s)	32, 138, 519, 936
BsrI	ACTGG	2 cut(s)	456, 844
BssECI	CCNNGG	2 cut(s)	328, 613
BssMI	GATC	8 cut(s)	204, 249, 495, 602, 732, 961, 981, 1051
BssT1I	CCWWGG	2 cut(s)	328, 613
Bst4CI	ACNGT	1 cut(s)	892
Bst6I	CTCTTC	1 cut(s)	408
BstAFI	CTTAAG	1 cut(s)	56
BstAPI	GCANNNNNTGC	1 cut(s)	395
BstC8I	GCNNGC	2 cut(s)	39, 89
BstDEI	CTNAG	5 cut(s)	119, 338, 561, 634, 774
BstDSI	CCRYGG	1 cut(s)	613
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	8 cut(s)	207, 252, 498, 605, 735, 964, 984, 1054
BstMBI	GATC	8 cut(s)	204, 249, 495, 602, 732, 961, 981, 1051
BstMCI	CGRYCG	1 cut(s)	735
BstMWI	GCNNNNNNNGC	5 cut(s)	97, 149, 195, 395, 776
BstNSI	RCATGY	1 cut(s)	41
BstSCI	CCNGG	1 cut(s)	41
BstV1I	GCAGC	5 cut(s)	331, 493, 953, 1004, 1044
BstV2I	GAAGAC	1 cut(s)	876
BstX2I	RGATCY	3 cut(s)	602, 981, 1051
BstYI	RGATCY	3 cut(s)	602, 981, 1051
BsuRI	GGCC	1 cut(s)	235
BtgI	CCRYGG	1 cut(s)	613
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	1 cut(s)	130
BtsIMutI	CAGTG	2 cut(s)	130, 558
Cac8I	GCNNGC	2 cut(s)	39, 89
Cfr13I	GGNCC	1 cut(s)	669
Csp6I	GTAC	2 cut(s)	831, 923
CviAII	CATG	5 cut(s)	38, 213, 614, 677, 967
CviQI	GTAC	2 cut(s)	831, 923
DdeI	CTNAG	5 cut(s)	119, 338, 561, 634, 774
DpnI	GATC	8 cut(s)	206, 251, 497, 604, 734, 963, 983, 1053
DpnII	GATC	8 cut(s)	204, 249, 495, 602, 732, 961, 981, 1051
DraI	TTTAAA	1 cut(s)	303
Eam1104I	CTCTTC	1 cut(s)	408
EarI	CTCTTC	1 cut(s)	408
Eco130I	CCWWGG	2 cut(s)	328, 613
Eco24I	GRGCYC	1 cut(s)	621
Eco47I	GGWCC	1 cut(s)	669
Eco88I	CYCGRG	1 cut(s)	698
EcoO109I	RGGNCCY	1 cut(s)	669
EcoT14I	CCWWGG	2 cut(s)	328, 613
EcoT22I	ATGCAT	3 cut(s)	367, 373, 379
EcoT38I	GRGCYC	1 cut(s)	621
ErhI	CCWWGG	2 cut(s)	328, 613
FaeI	CATG	5 cut(s)	41, 216, 617, 680, 970
FatI	CATG	5 cut(s)	37, 212, 613, 676, 966
FauNDI	CATATG	2 cut(s)	367, 373
FbaI	TGATCA	1 cut(s)	495
Fnu4HI	GCNGC	8 cut(s)	129, 190, 345, 507, 942, 973, 1018, 1033
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	621
Fsp4HI	GCNGC	8 cut(s)	129, 190, 345, 507, 942, 973, 1018, 1033
FspBI	CTAG	5 cut(s)	156, 195, 329, 578, 641
GluI	GCNGC	8 cut(s)	129, 190, 345, 507, 942, 973, 1018, 1033
GsaI	CCCAGC	1 cut(s)	389
GsuI	CTGGAG	1 cut(s)	707
HaeIII	GGCC	1 cut(s)	235
HapII	CCGG	1 cut(s)	43
Hin1II	CATG	5 cut(s)	41, 216, 617, 680, 970
HinfI	GANTC	4 cut(s)	11, 106, 530, 536
HpaII	CCGG	1 cut(s)	43
HphI	GGTGA	2 cut(s)	6, 466
Hpy166II	GTNNAC	1 cut(s)	726
Hpy188I	TCNGA	6 cut(s)	240, 297, 535, 541, 637, 775
Hpy188III	TCNNGA	1 cut(s)	1041
Hpy8I	GTNNAC	1 cut(s)	726
HpyAV	CCTTC	3 cut(s)	170, 660, 682
HpyCH4III	ACNGT	1 cut(s)	892
HpyF10VI	GCNNNNNNNGC	5 cut(s)	97, 149, 195, 395, 776
HpyF3I	CTNAG	5 cut(s)	119, 338, 561, 634, 774
Hsp92II	CATG	5 cut(s)	41, 216, 617, 680, 970
KpnI	GGTACC	1 cut(s)	926
Ksp22I	TGATCA	1 cut(s)	495
Kzo9I	GATC	8 cut(s)	204, 249, 495, 602, 732, 961, 981, 1051
LmnI	GCTCC	3 cut(s)	688, 860, 1040
Lsp1109I	GCAGC	5 cut(s)	331, 493, 953, 1004, 1044
LweI	GCATC	4 cut(s)	161, 398, 419, 779
MaeI	CTAG	5 cut(s)	156, 195, 329, 578, 641
MaeIII	GTNAC	2 cut(s)	556, 997
MalI	GATC	8 cut(s)	206, 251, 497, 604, 734, 963, 983, 1053
MbiI	CCGCTC	1 cut(s)	972
MboI	GATC	8 cut(s)	204, 249, 495, 602, 732, 961, 981, 1051
MboII	GAAGA	7 cut(s)	86, 101, 262, 395, 469, 795, 876
MflI	RGATCY	3 cut(s)	602, 981, 1051
MhlI	GDGCHC	1 cut(s)	621
MluCI	AATT	1 cut(s)	298
MnlI	CCTC	8 cut(s)	33, 246, 303, 392, 769, 784, 995, 1048
Mph1103I	ATGCAT	3 cut(s)	367, 373, 379
MseI	TTAA	4 cut(s)	57, 302, 956, 977
MspA1I	CMGCKG	1 cut(s)	944
MspCI	CTTAAG	1 cut(s)	56
MspI	CCGG	1 cut(s)	43
MspR9I	CCNGG	1 cut(s)	43
MwoI	GCNNNNNNNGC	5 cut(s)	97, 149, 195, 395, 776
NciI	CCSGG	1 cut(s)	43
NcoI	CCATGG	1 cut(s)	613
NdeI	CATATG	2 cut(s)	367, 373
NdeII	GATC	8 cut(s)	204, 249, 495, 602, 732, 961, 981, 1051
NlaIII	CATG	5 cut(s)	41, 216, 617, 680, 970
NlaIV	GGNNCC	1 cut(s)	924
NmuCI	GTSAC	1 cut(s)	556
NsiI	ATGCAT	3 cut(s)	367, 373, 379
NspI	RCATGY	1 cut(s)	41
PaeI	GCATGC	1 cut(s)	41
PfeI	GAWTC	4 cut(s)	11, 106, 530, 536
PflFI	GACNNNGTC	1 cut(s)	554
PkrI	GCNGC	8 cut(s)	130, 191, 346, 508, 943, 974, 1019, 1034
Ple19I	CGATCG	1 cut(s)	735
PpuMI	RGGWCCY	1 cut(s)	669
Psp5II	RGGWCCY	1 cut(s)	669
PspFI	CCCAGC	1 cut(s)	385
PspN4I	GGNNCC	1 cut(s)	924
PspPI	GGNCC	1 cut(s)	669
PspPPI	RGGWCCY	1 cut(s)	669
PsuI	RGATCY	3 cut(s)	602, 981, 1051
PsyI	GACNNNGTC	1 cut(s)	554
PvuI	CGATCG	1 cut(s)	735
PvuII	CAGCTG	1 cut(s)	944
RsaI	GTAC	2 cut(s)	832, 924
RsaNI	GTAC	2 cut(s)	831, 923
SaqAI	TTAA	4 cut(s)	57, 302, 956, 977
SatI	GCNGC	8 cut(s)	129, 190, 345, 507, 942, 973, 1018, 1033
Sau3AI	GATC	8 cut(s)	204, 249, 495, 602, 732, 961, 981, 1051
Sau96I	GGNCC	1 cut(s)	669
ScrFI	CCNGG	1 cut(s)	43
SduI	GDGCHC	1 cut(s)	621
SfaNI	GCATC	4 cut(s)	161, 398, 419, 779
SinI	GGWCC	1 cut(s)	669
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
SphI	GCATGC	1 cut(s)	41
Sse9I	AATT	1 cut(s)	298
SsiI	CCGC	3 cut(s)	128, 189, 972
SspMI	CTAG	5 cut(s)	156, 195, 329, 578, 641
StyD4I	CCNGG	1 cut(s)	41
StyI	CCWWGG	2 cut(s)	328, 613
TaaI	ACNGT	1 cut(s)	892
TaqI	TCGA	1 cut(s)	789
TasI	AATT	1 cut(s)	298
TatI	WGTACW	1 cut(s)	830
TauI	GCSGC	3 cut(s)	131, 192, 975
TfiI	GAWTC	4 cut(s)	11, 106, 530, 536
Tru1I	TTAA	4 cut(s)	57, 302, 956, 977
Tru9I	TTAA	4 cut(s)	57, 302, 956, 977
TscAI	CASTG	2 cut(s)	130, 565
TseFI	GTSAC	1 cut(s)	556
TseI	GCWGC	5 cut(s)	344, 506, 941, 1017, 1032
Tsp45I	GTSAC	1 cut(s)	556
TspDTI	ATGAA	3 cut(s)	21, 201, 1047
TspRI	CASTG	2 cut(s)	130, 565
Tth111I	GACNNNGTC	1 cut(s)	554
Vha464I	CTTAAG	1 cut(s)	56
VpaK11BI	GGWCC	1 cut(s)	669
XapI	RAATTY	1 cut(s)	298
XceI	RCATGY	1 cut(s)	41
XcmI	CCANNNNNNNNNTGG	2 cut(s)	99, 523
XmaJI	CCTAGG	1 cut(s)	328
XspI	CTAG	5 cut(s)	156, 195, 329, 578, 641
Zsp2I	ATGCAT	3 cut(s)	367, 373, 379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.