Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0016050

Physical Location & Seq

Genomic Coordinates Reverse (-)

507448 .. 511089

Gene Structure 3642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g01030.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGGCTTGCAGACTTGCTGATTCTATGTTACTTTCCAAGGGCCCCTATCATAAGCCAATTCGAAGCCAGAGAATTGGAGCCCATTGTTCTTCAGGAATCTGCTATTTGAAATGGGACAAACTTCCCCAAAAGGAGATCAAGCGTCAAAAATGTTCTCGTAGAAATCGAACTGCCTTCGTACAAGCAATTGCCGTTCCAGTTGCACCATCTTCAACAGACAGCGCTGAGTACAGGAAACAATTATGTGAAAGTTATGGTTTCAGGCAAATTGGAGAACCACTCCCAGACAATGTTACACTAAAGAATATCATTGATACCCTTCCAAAAAAGGTGTTTGAGATTGATGATGTGAAAGCATGGAAGTCAGTTCTAATATCTGCCACTTCCTATGCAATTGGGCTCTTTATGATTTCAAAAGCCCCATGGTATCTACTCCCTCTGGCATGGGCATGGACAGGGACTGCAGTTACTGGGTTTTTTGTTATAGGCCATGATTGTGCACACAAATCATTCTCAAGAAACAAATTAGTGGAAGACATTGTTGGGACACTAGCCTTTTTGCCGTTGATATATCCATACGAACCATGGAGGTTTAAGCACGATCGGCATCATGCAAAAACAAACATGTTGGTTGAGGATACAGCGTGGCAGCCTATCCCAAAAGATGAGTTTGATTCATCCCCTTTGTTGCGCAAGGCACTTATTTATGCATATGGCCCAATTCGTCCTTGGATGTCAATAGCTCACTGGTGGCTCATCCACTTCAATTTGAAGAAGTTCAGAACAAGTGAAGTTAAAAGGGCGGCTATCAGTTTGGCTTGTGTTTTTGCGTTCATGGGGATTGGATGGCCACTAATTGTGTACAAGACAGGGATCATGGGATGGGTAAAGTTTTGGTTGATGCCATGGTTGGGCTACCACTTTTGGATGAGTACATTCACAATGGTTCATCATACGGCCCCTCATATACCTTTCAAGTCTGCGGATGAGTGGGATGCTGCTCAGGCTCAACTTAATGGAACAGTTCACTGTGACTACCCCTCATGGATCGAGATCCTATGCCATGATATCAATGTCCATATACCCCATCATATATCTCCAAGGATTCCAAGCTATAACTTAAGAGCAGCTCATAAGTCTATCCAAGAAAACTGGGGAAAGTATCTTAACGAGGCTACATGGAATTGGCGCTTGATGAAGACGATAATGACAGTGTGCCATGTATACAACAAGGAGGAGAATTACGTCCCCTTTGATCGACTTGCCCCTGAAGACTCTCTTCCGATTACATTCCTCAAAAAAGTGATGCCTGATTATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009642 GO:0009644 GO:0009892 GO:0009941 GO:0009987 GO:0010109 GO:0010205 GO:0016053 GO:0019222 GO:0019752 GO:0019904 GO:0031323 GO:0031324 GO:0031967 GO:0031975 GO:0032787 GO:0042548 GO:0043155 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043467 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0072330 GO:1901576 GO:1905156

KEGG Pathways

Metabolic & Signaling

ko02020 map02020

Pfam Domains

Protein Families

FA_desaturase

Protein Analysis

441

Amino Acids

50.96

Weight (kDa)

9.25

Isoelectric Point (pI)

46.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_desaturase	PF00487	141 - 389	8.5e-34	Fatty acid desaturase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016050)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30950
fragaria_vesca	FvH4_1g01030
malus_domestica	MD15G1152700.v1.1
prunus_persica	Prupe.7G261900_v2.0.a1
pyrus_communis	pycom15g13730
rosa_chinensis	RchiOBHm_Chr2g0085771
rosa_laevigata	RLG00000015718
rosa_multiflora	Rmu_sc0009759.1_g000002
rosa_roxburghii	Rroxscaffold_2G00155050
rosa_rugosa	Rorug01G0463000
rosa_samantha	Rh2AG012300 Rh2BG012900 Rh2CG013600 Rh2DG014600
rosa_wichuraiana	Rw2G001090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	692
AccI	GTMKAC	1 cut(s)	1224
AciI	CCGC	2 cut(s)	803, 983
AclWI	GGATC	3 cut(s)	881, 1048, 1055
AcoI	YGGCCR	1 cut(s)	848
AcuI	CTGAAG	2 cut(s)	75, 1290
AfaI	GTAC	4 cut(s)	180, 230, 863, 934
AfeI	AGCGCT	1 cut(s)	223
AfiI	CCNNNNNNNGG	1 cut(s)	911
AflII	CTTAAG	1 cut(s)	1120
AflIII	ACRYGT	1 cut(s)	624
AgsI	TTSAA	6 cut(s)	109, 213, 414, 766, 772, 976
AjuI	GAANNNNNNNTTGG	2 cut(s)	525, 557
AluBI	AGCT	3 cut(s)	743, 1113, 1130
AluI	AGCT	3 cut(s)	743, 1113, 1130
Alw21I	GWGCWC	1 cut(s)	502
Alw44I	GTGCAC	1 cut(s)	498
AlwI	GGATC	3 cut(s)	881, 1048, 1055
AlwNI	CAGNNNCTG	2 cut(s)	461, 470
Aor51HI	AGCGCT	1 cut(s)	223
AoxI	GGCC	5 cut(s)	40, 487, 715, 848, 957
ApaI	GGGCCC	1 cut(s)	44
ApaLI	GTGCAC	1 cut(s)	498
ApeKI	GCWGC	3 cut(s)	649, 998, 1127
Asp700I	GAANNNNTTC	1 cut(s)	776
AspLEI	GCGC	3 cut(s)	224, 693, 1191
AspS9I	GGNCC	4 cut(s)	40, 41, 716, 958
AsuII	TTCGAA	1 cut(s)	61
BaeGI	GKGCMC	2 cut(s)	44, 502
BalI	TGGCCA	1 cut(s)	850
BanII	GRGCYC	3 cut(s)	44, 82, 402
BbsI	GAAGAC	3 cut(s)	540, 1205, 1278
Bbv12I	GWGCWC	1 cut(s)	502
BbvI	GCAGC	3 cut(s)	661, 985, 1139
BccI	CCATC	4 cut(s)	214, 840, 876, 1095
BceAI	ACGGC	3 cut(s)	176, 547, 972
BciVI	GTATCC	1 cut(s)	631
BfaI	CTAG	1 cut(s)	551
BfmI	CTRYAG	1 cut(s)	462
BfoI	RGCGCY	2 cut(s)	225, 1192
BfrI	CTTAAG	1 cut(s)	1120
BfuI	GTATCC	1 cut(s)	631
BisI	GCNGC	4 cut(s)	650, 804, 999, 1128
BlsI	GCNGC	4 cut(s)	651, 805, 1000, 1129
BmgT120I	GGNCC	4 cut(s)	40, 41, 716, 958
BmiI	GGNNCC	4 cut(s)	42, 43, 79, 960
BmrI	ACTGGG	2 cut(s)	480, 1162
BmsI	GCATC	4 cut(s)	616, 891, 985, 1296
BmuI	ACTGGG	2 cut(s)	480, 1162
BpiI	GAAGAC	3 cut(s)	540, 1205, 1278
BplI	GAGNNNNNCTC	2 cut(s)	264, 296
Bpu10I	CCTNAGC	1 cut(s)	1002
Bpu14I	TTCGAA	1 cut(s)	61
BpuEI	CTTGAG	1 cut(s)	499
BsaBI	GATNNNNATC	2 cut(s)	606, 1052
BsaJI	CCNNGG	6 cut(s)	36, 422, 584, 728, 905, 1100
Bsc4I	CCNNNNNNNGG	1 cut(s)	911
Bse1I	ACTGG	4 cut(s)	197, 475, 752, 1157
Bse8I	GATNNNNATC	2 cut(s)	606, 1052
BseDI	CCNNGG	6 cut(s)	36, 422, 584, 728, 905, 1100
BseGI	GGATG	8 cut(s)	677, 738, 756, 851, 887, 933, 991, 1000
BseJI	GATNNNNATC	2 cut(s)	606, 1052
BseLI	CCNNNNNNNGG	1 cut(s)	911
BseMII	CTCAG	2 cut(s)	216, 1016
BseNI	ACTGG	4 cut(s)	197, 475, 752, 1157
BseRI	GAGGAG	1 cut(s)	1250
BseSI	GKGCMC	2 cut(s)	44, 502
BseXI	GCAGC	3 cut(s)	661, 985, 1139
Bsh1285I	CGRYCG	1 cut(s)	604
BshFI	GGCC	5 cut(s)	42, 489, 717, 850, 959
BsiEI	CGRYCG	1 cut(s)	604
BsiHKAI	GWGCWC	1 cut(s)	502
BslFI	GGGAC	4 cut(s)	128, 472, 559, 1232
BslI	CCNNNNNNNGG	1 cut(s)	911
BsmFI	GGGAC	4 cut(s)	128, 472, 559, 1232
BsnI	GGCC	5 cut(s)	42, 489, 717, 850, 959
Bsp119I	TTCGAA	1 cut(s)	61
Bsp120I	GGGCCC	1 cut(s)	40
Bsp1286I	GDGCHC	4 cut(s)	44, 82, 402, 502
Bsp1407I	TGTACA	1 cut(s)	861
Bsp143I	GATC	6 cut(s)	135, 601, 873, 1047, 1053, 1255
Bsp19I	CCATGG	3 cut(s)	422, 584, 905
BspACI	CCGC	2 cut(s)	803, 983
BspANI	GGCC	5 cut(s)	42, 489, 717, 850, 959
BspCNI	CTCAG	2 cut(s)	217, 1015
BspLI	GGNNCC	4 cut(s)	42, 43, 79, 960
BspMAI	CTGCAG	1 cut(s)	466
BspPI	GGATC	3 cut(s)	881, 1048, 1055
BspT104I	TTCGAA	1 cut(s)	61
BspTI	CTTAAG	1 cut(s)	1120
BsrGI	TGTACA	1 cut(s)	861
BsrI	ACTGG	4 cut(s)	197, 475, 752, 1157
BssECI	CCNNGG	6 cut(s)	36, 422, 584, 728, 905, 1100
BssMI	GATC	6 cut(s)	135, 601, 873, 1047, 1053, 1255
BssNAI	GTATAC	1 cut(s)	1225
BssT1I	CCWWGG	6 cut(s)	36, 422, 584, 728, 905, 1100
Bst1107I	GTATAC	1 cut(s)	1225
Bst4CI	ACNGT	3 cut(s)	1024, 1031, 1213
Bst6I	CTCTTC	1 cut(s)	1284
BstAFI	CTTAAG	1 cut(s)	1120
BstAUI	TGTACA	1 cut(s)	861
BstBI	TTCGAA	1 cut(s)	61
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	2 cut(s)	225, 1002
BstDSI	CCRYGG	3 cut(s)	422, 584, 905
BstF5I	GGATG	8 cut(s)	677, 738, 756, 851, 887, 933, 991, 1000
BstH2I	RGCGCY	2 cut(s)	225, 1192
BstHHI	GCGC	3 cut(s)	224, 693, 1191
BstKTI	GATC	6 cut(s)	138, 604, 876, 1050, 1056, 1258
BstMBI	GATC	6 cut(s)	135, 601, 873, 1047, 1053, 1255
BstMCI	CGRYCG	1 cut(s)	604
BstMWI	GCNNNNNNNGC	2 cut(s)	604, 1004
BstNSI	RCATGY	1 cut(s)	628
BstSFI	CTRYAG	1 cut(s)	462
BstSLI	GKGCMC	2 cut(s)	44, 502
BstV1I	GCAGC	3 cut(s)	661, 985, 1139
BstV2I	GAAGAC	3 cut(s)	540, 1205, 1278
BstX2I	RGATCY	1 cut(s)	1053
BstXI	CCANNNNNNTGG	1 cut(s)	74
BstYI	RGATCY	1 cut(s)	1053
BstZ17I	GTATAC	1 cut(s)	1225
BsuI	GTATCC	1 cut(s)	631
BsuRI	GGCC	5 cut(s)	42, 489, 717, 850, 959
BtgI	CCRYGG	3 cut(s)	422, 584, 905
BtsCI	GGATG	8 cut(s)	677, 738, 756, 851, 887, 933, 991, 1000
BtsIMutI	CAGTG	3 cut(s)	745, 1027, 1218
Cac8I	GCNNGC	1 cut(s)	7
CaiI	CAGNNNCTG	2 cut(s)	461, 470
CfoI	GCGC	3 cut(s)	224, 693, 1191
Cfr13I	GGNCC	4 cut(s)	40, 41, 716, 958
CseI	GACGC	1 cut(s)	131
Csp6I	GTAC	4 cut(s)	179, 229, 862, 933
CviQI	GTAC	4 cut(s)	179, 229, 862, 933
DdeI	CTNAG	2 cut(s)	225, 1002
DpnI	GATC	6 cut(s)	137, 603, 875, 1049, 1055, 1257
DpnII	GATC	6 cut(s)	135, 601, 873, 1047, 1053, 1255
EaeI	YGGCCR	1 cut(s)	848
Eam1104I	CTCTTC	1 cut(s)	1284
EarI	CTCTTC	1 cut(s)	1284
Eco130I	CCWWGG	6 cut(s)	36, 422, 584, 728, 905, 1100
Eco24I	GRGCYC	3 cut(s)	44, 82, 402
Eco32I	GATATC	1 cut(s)	1069
Eco47III	AGCGCT	1 cut(s)	223
Eco57I	CTGAAG	2 cut(s)	75, 1290
EcoO109I	RGGNCCY	2 cut(s)	40, 41
EcoRV	GATATC	1 cut(s)	1069
EcoT14I	CCWWGG	6 cut(s)	36, 422, 584, 728, 905, 1100
EcoT22I	ATGCAT	1 cut(s)	712
EcoT38I	GRGCYC	3 cut(s)	44, 82, 402
ErhI	CCWWGG	6 cut(s)	36, 422, 584, 728, 905, 1100
FalI	AAGNNNNNCTT	2 cut(s)	1263, 1295
FaqI	GGGAC	4 cut(s)	128, 472, 559, 1232
FauNDI	CATATG	1 cut(s)	712
FblI	GTMKAC	1 cut(s)	1224
Fnu4HI	GCNGC	4 cut(s)	650, 804, 999, 1128
FokI	GGATG	8 cut(s)	664, 743, 745, 858, 894, 940, 998, 1007
FriOI	GRGCYC	3 cut(s)	44, 82, 402
Fsp4HI	GCNGC	4 cut(s)	650, 804, 999, 1128
FspBI	CTAG	1 cut(s)	551
FspI	TGCGCA	1 cut(s)	692
GlaI	GCGC	3 cut(s)	223, 692, 1190
GluI	GCNGC	4 cut(s)	650, 804, 999, 1128
HaeII	RGCGCY	2 cut(s)	225, 1192
HaeIII	GGCC	5 cut(s)	42, 489, 717, 850, 959
HgaI	GACGC	1 cut(s)	131
HhaI	GCGC	3 cut(s)	224, 693, 1191
Hin6I	GCGC	3 cut(s)	222, 691, 1189
HinP1I	GCGC	3 cut(s)	222, 691, 1189
HinfI	GANTC	5 cut(s)	20, 96, 674, 1105, 1274
Hpy166II	GTNNAC	4 cut(s)	500, 862, 1027, 1225
Hpy188I	TCNGA	2 cut(s)	782, 1284
Hpy188III	TCNNGA	3 cut(s)	93, 516, 1051
Hpy8I	GTNNAC	4 cut(s)	500, 862, 1027, 1225
HpyAV	CCTTC	2 cut(s)	184, 329
HpyCH4III	ACNGT	3 cut(s)	1024, 1031, 1213
HpyCH4IV	ACGT	1 cut(s)	1245
HpyCH4V	TGCA	7 cut(s)	9, 203, 392, 464, 500, 614, 710
HpyF10VI	GCNNNNNNNGC	2 cut(s)	604, 1004
HpyF3I	CTNAG	2 cut(s)	225, 1002
HpySE526I	ACGT	1 cut(s)	1245
HspAI	GCGC	3 cut(s)	222, 691, 1189
Kzo9I	GATC	6 cut(s)	135, 601, 873, 1047, 1053, 1255
LmnI	GCTCC	1 cut(s)	77
Lsp1109I	GCAGC	3 cut(s)	661, 985, 1139
LweI	GCATC	4 cut(s)	616, 891, 985, 1296
MaeI	CTAG	1 cut(s)	551
MaeII	ACGT	1 cut(s)	1245
MaeIII	GTNAC	4 cut(s)	27, 292, 466, 1031
MalI	GATC	6 cut(s)	137, 603, 875, 1049, 1055, 1257
MboI	GATC	6 cut(s)	135, 601, 873, 1047, 1053, 1255
MboII	GAAGA	7 cut(s)	81, 201, 545, 784, 1210, 1271, 1283
MfeI	CAATTG	2 cut(s)	186, 393
MflI	RGATCY	1 cut(s)	1053
MhlI	GDGCHC	4 cut(s)	44, 82, 402, 502
MlsI	TGGCCA	1 cut(s)	850
MluNI	TGGCCA	1 cut(s)	850
MlyI	GAGTC	1 cut(s)	1268
MnlI	CCTC	8 cut(s)	447, 582, 628, 972, 1051, 1165, 1228, 1304
Mox20I	TGGCCA	1 cut(s)	850
Mph1103I	ATGCAT	1 cut(s)	712
MroXI	GAANNNNTTC	1 cut(s)	776
MscI	TGGCCA	1 cut(s)	850
MseI	TTAA	5 cut(s)	594, 795, 1014, 1121, 1167
MslI	CAYNNNNRTG	2 cut(s)	448, 495
Msp20I	TGGCCA	1 cut(s)	850
MspCI	CTTAAG	1 cut(s)	1120
MunI	CAATTG	2 cut(s)	186, 393
MwoI	GCNNNNNNNGC	2 cut(s)	604, 1004
NcoI	CCATGG	3 cut(s)	422, 584, 905
NdeI	CATATG	1 cut(s)	712
NdeII	GATC	6 cut(s)	135, 601, 873, 1047, 1053, 1255
NlaIV	GGNNCC	4 cut(s)	42, 43, 79, 960
NmuCI	GTSAC	1 cut(s)	1031
NsbI	TGCGCA	1 cut(s)	692
NsiI	ATGCAT	1 cut(s)	712
NspI	RCATGY	1 cut(s)	628
NspV	TTCGAA	1 cut(s)	61
PciI	ACATGT	1 cut(s)	624
PcsI	WCGNNNNNNNCGW	1 cut(s)	163
PdmI	GAANNNNTTC	1 cut(s)	776
PfeI	GAWTC	4 cut(s)	20, 96, 674, 1105
PkrI	GCNGC	4 cut(s)	651, 805, 1000, 1129
Ple19I	CGATCG	1 cut(s)	604
PleI	GAGTC	1 cut(s)	1268
PpsI	GAGTC	1 cut(s)	1268
PscI	ACATGT	1 cut(s)	624
PspN4I	GGNNCC	4 cut(s)	42, 43, 79, 960
PspOMI	GGGCCC	1 cut(s)	40
PspPI	GGNCC	4 cut(s)	40, 41, 716, 958
PstI	CTGCAG	1 cut(s)	466
PstNI	CAGNNNCTG	2 cut(s)	461, 470
PsuI	RGATCY	1 cut(s)	1053
PvuI	CGATCG	1 cut(s)	604
RsaI	GTAC	4 cut(s)	180, 230, 863, 934
RsaNI	GTAC	4 cut(s)	179, 229, 862, 933
RseI	CAYNNNNRTG	2 cut(s)	448, 495
SaqAI	TTAA	5 cut(s)	594, 795, 1014, 1121, 1167
SatI	GCNGC	4 cut(s)	650, 804, 999, 1128
Sau3AI	GATC	6 cut(s)	135, 601, 873, 1047, 1053, 1255
Sau96I	GGNCC	4 cut(s)	40, 41, 716, 958
SchI	GAGTC	1 cut(s)	1268
SduI	GDGCHC	4 cut(s)	44, 82, 402, 502
SetI	ASST	7 cut(s)	333, 593, 745, 973, 1115, 1132, 1248
SfaNI	GCATC	4 cut(s)	616, 891, 985, 1296
SfcI	CTRYAG	1 cut(s)	462
SfuI	TTCGAA	1 cut(s)	61
SmiMI	CAYNNNNRTG	2 cut(s)	448, 495
SmlI	CTYRAG	2 cut(s)	514, 1120
SmoI	CTYRAG	2 cut(s)	514, 1120
SsiI	CCGC	2 cut(s)	803, 983
SspMI	CTAG	1 cut(s)	551
StyI	CCWWGG	6 cut(s)	36, 422, 584, 728, 905, 1100
TaaI	ACNGT	3 cut(s)	1024, 1031, 1213
TaiI	ACGT	1 cut(s)	1248
TaqI	TCGA	4 cut(s)	61, 166, 1050, 1258
TatI	WGTACW	3 cut(s)	228, 861, 932
TauI	GCSGC	1 cut(s)	806
TfiI	GAWTC	4 cut(s)	20, 96, 674, 1105
Tru1I	TTAA	5 cut(s)	594, 795, 1014, 1121, 1167
Tru9I	TTAA	5 cut(s)	594, 795, 1014, 1121, 1167
TscAI	CASTG	3 cut(s)	752, 1034, 1218
TseFI	GTSAC	1 cut(s)	1031
TseI	GCWGC	3 cut(s)	649, 998, 1127
Tsp45I	GTSAC	1 cut(s)	1031
TspDTI	ATGAA	4 cut(s)	666, 823, 938, 1211
TspRI	CASTG	3 cut(s)	752, 1034, 1218
Vha464I	CTTAAG	1 cut(s)	1120
VneI	GTGCAC	1 cut(s)	498
XceI	RCATGY	1 cut(s)	628
XcmI	CCANNNNNNNNNTGG	2 cut(s)	582, 726
XmiI	GTMKAC	1 cut(s)	1224
XmnI	GAANNNNTTC	1 cut(s)	776
XspI	CTAG	1 cut(s)	551
Zsp2I	ATGCAT	1 cut(s)	712

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.