pycom15g13730

Omega-6 fatty acid desaturase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Reverse (-)
9307656 .. 9310424
2769 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g13730.6

Sequence Viewer

Length: 1332 bp
ATGGCGTGCAGGCTTGCAAATTCTGCGTTCCTCACAACGGGACCCCATCAGAACCCAATTCAGAGGCAAAGAATCGGGACCCATTACTCTTCACGAATCTGCTATCTGAGATTGGGCGGCGCTCTCCGAAAGGGAATCAAAAGGCAGCAATGTTCGAGTCGTAGAAATTGGACGGCGGTTGTGCAGGCGGTTGCCGCTCCAGTTGCGCCGCCTCCGGAAGCTGACAGTGCCGAGTACAGAAAACAATTGGCTGAAAGTTATGGGTTCAAACGGATTGGAGAGCCACTTCCGGATAACGTTACGCTGAAGGATGTCATCGAGACCCTTCCGAAAAAGGTGTTTGAGATTGATGATGTGAAAGCATGGAAGTCAGTTCTAATTTCTGCAACTTCCTATGCATTGGGGCTCTTTATGATTTCGAAAGCCCCATGGTATCTACTTCCTCTGGCTTGGGCATGGACGGGGACTGCAGTTACTGGGTTTTTTGTTATAGGTCATGATTGTGCGCACAAATCATTCTCAAAAAACAAATTACTGGAAGACATCGTTGGAACGCTGGCCTTTCTGCCGTTGATATACCCATACGAACCATGGCGGTTTAAGCATGATCGTCATCATGCAAAAACAAACATGTTGGTGGAGGATACAGCTTGGCAGCCTGTTTCTAAAGACGAGTTTGATTCATCTGCTATTTTTCGCCAGGCAATCATTTATGGATATGGCCCACTTCGGCCTTGGATGTCAATAGCTCATTGGATGATCGTCCACTTCGATTTGAACATGTTCAGACCGAGTGAATTGAAAAGGGTGAAGATAAGTTTGGCTTGTGTTTTTGCGTTTATGGGGATTGGCTGGCCATTGATCGTGTACAAGGCAGGGATCTTGGGATGGATAAAGTTTTGGCTGATGCCATTTTTGGGATATCACTTTTGGATGAGCACATTCACAATGGTACACCATACTGCGCCTCATATACCTTTCAAGACTGCGGATGAGTGGAATGCTGCTCAGGCTCAACTTAATGGAACAGTGCATTGTGATTACCCCGGATGGATCGAGACCCTCTGCCATGATATCAATGTCCATATACCACACCACATATCTCCAAGGATTCCAAGTTATAACCTACGTGCAGCTCACAAGTCTCTTCAAGAAAACTGGGGAAAGTATATGAACGAGGCTACATGGAATTGGCGTTTGATGAAGACGATACTGACGGTATGCCATGTTTACGACAAGGAGGAGAATTACGTTGCATTTGACAAACTTGCCCCTGGAATCGAGTCTCATCCAATTAAGTTCCTTAAAAAAGCAATGCCCGATTATGCTTGA

Protein Analysis

444

Amino Acids

50.87

Weight (kDa)

9.24

Isoelectric Point (pI)

46.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016050)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30950
fragaria_vesca FvH4_1g01030
malus_domestica MD15G1152700.v1.1
prunus_persica Prupe.7G261900_v2.0.a1
pyrus_communis pycom15g13730
rosa_chinensis RchiOBHm_Chr2g0085771
rosa_laevigata RLG00000015718
rosa_multiflora Rmu_sc0009759.1_g000002
rosa_roxburghii Rroxscaffold_2G00155050
rosa_rugosa Rorug01G0463000
rosa_samantha Rh2AG012300 Rh2BG012900 Rh2CG013600 Rh2DG014600
rosa_wichuraiana Rw2G001090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1122
Acc16I TGCGCA 1 cut(s) 507
AccBSI CCGCTC 1 cut(s) 197
AccIII TCCGGA 2 cut(s) 214, 289
AciI CCGC 7 cut(s) 117, 176, 188, 195, 209, 595, 989
AclI AACGTT 1 cut(s) 297
AclWI GGATC 2 cut(s) 887, 1061
AcoI YGGCCR 1 cut(s) 854
AcsI RAATTY 1 cut(s) 19
AcuI CTGAAG 1 cut(s) 326
AfaI GTAC 3 cut(s) 236, 869, 954
AfiI CCNNNNNNNGG 2 cut(s) 37, 917
AflIII ACRYGT 2 cut(s) 630, 780
AgsI TTSAA 5 cut(s) 268, 778, 802, 982, 1151
AjnI CCWGG 2 cut(s) 699, 1273
AjuI GAANNNNNNNTTGG 4 cut(s) 531, 563, 803, 835
AluBI AGCT 4 cut(s) 221, 650, 749, 1136
AluI AGCT 4 cut(s) 221, 650, 749, 1136
Alw21I GWGCWC 1 cut(s) 941
Alw26I GTCTC 4 cut(s) 314, 1052, 1149, 1290
AlwI GGATC 2 cut(s) 887, 1061
AlwNI CAGNNNCTG 1 cut(s) 476
Aor13HI TCCGGA 2 cut(s) 214, 289
AoxI GGCC 4 cut(s) 558, 721, 731, 854
ApeKI GCWGC 4 cut(s) 145, 655, 1004, 1133
ApoI RAATTY 1 cut(s) 19
Asp700I GAANNNNTTC 1 cut(s) 782
AspLEI GCGC 4 cut(s) 122, 208, 508, 967
AspS9I GGNCC 3 cut(s) 41, 78, 722
AsuC2I CCSGG 1 cut(s) 1047
AsuHPI GGTGA 1 cut(s) 820
AsuII TTCGAA 1 cut(s) 419
AvaII GGWCC 2 cut(s) 41, 78
BalI TGGCCA 1 cut(s) 856
BanII GRGCYC 1 cut(s) 408
BbsI GAAGAC 2 cut(s) 546, 1211
Bbv12I GWGCWC 1 cut(s) 941
BbvI GCAGC 4 cut(s) 157, 667, 991, 1145
BccI CCATC 3 cut(s) 54, 882, 1044
BceAI ACGGC 2 cut(s) 189, 553
BciT130I CCWGG 2 cut(s) 701, 1275
BciVI GTATCC 1 cut(s) 637
BcnI CCSGG 1 cut(s) 1047
BcoDI GTCTC 4 cut(s) 314, 1052, 1149, 1290
BfmI CTRYAG 1 cut(s) 468
BfoI RGCGCY 1 cut(s) 123
BfuI GTATCC 1 cut(s) 637
BisI GCNGC 7 cut(s) 118, 146, 195, 209, 656, 1005, 1134
BlsI GCNGC 7 cut(s) 119, 147, 196, 210, 657, 1006, 1135
Bme1390I CCNGG 3 cut(s) 701, 1047, 1275
Bme18I GGWCC 2 cut(s) 41, 78
BmgT120I GGNCC 3 cut(s) 41, 78, 722
BmiI GGNNCC 4 cut(s) 42, 43, 79, 80
BmrFI CCNGG 3 cut(s) 701, 1047, 1275
BmrI ACTGGG 2 cut(s) 486, 1168
BmsI GCATC 1 cut(s) 897
BmuI ACTGGG 2 cut(s) 486, 1168
BpiI GAAGAC 2 cut(s) 546, 1211
BpmI CTGGAG 1 cut(s) 183
Bpu10I CCTNAGC 1 cut(s) 1008
Bpu14I TTCGAA 1 cut(s) 419
BpuMI CCSGG 1 cut(s) 1047
BsaAI YACGTR 1 cut(s) 1130
BsaBI GATNNNNATC 1 cut(s) 612
BsaI GGTCTC 2 cut(s) 314, 1052
BsaJI CCNNGG 6 cut(s) 428, 590, 734, 1045, 1106, 1273
BsaWI WCCGGW 2 cut(s) 214, 289
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 917
Bse1I ACTGG 4 cut(s) 200, 481, 540, 1163
Bse3DI GCAATG 2 cut(s) 155, 1320
Bse8I GATNNNNATC 1 cut(s) 612
BseAI TCCGGA 2 cut(s) 214, 289
BseBI CCWGG 2 cut(s) 701, 1275
BseDI CCNNGG 6 cut(s) 428, 590, 734, 1045, 1106, 1273
BseGI GGATG 8 cut(s) 316, 744, 762, 893, 939, 997, 1055, 1288
BseJI GATNNNNATC 1 cut(s) 612
BseLI CCNNNNNNNGG 2 cut(s) 37, 917
BseMI GCAATG 2 cut(s) 155, 1320
BseMII CTCAG 2 cut(s) 98, 1022
BseNI ACTGG 4 cut(s) 200, 481, 540, 1163
BseRI GAGGAG 1 cut(s) 1256
BseXI GCAGC 4 cut(s) 157, 667, 991, 1145
BsgI GTGCAG 3 cut(s) 28, 203, 1152
BshFI GGCC 4 cut(s) 560, 723, 733, 856
BsiHKAI GWGCWC 1 cut(s) 941
BsiSI CCGG 3 cut(s) 215, 290, 1047
BslFI GGGAC 3 cut(s) 54, 91, 478
BslI CCNNNNNNNGG 2 cut(s) 37, 917
BsmAI GTCTC 4 cut(s) 314, 1052, 1149, 1290
BsmFI GGGAC 3 cut(s) 54, 91, 478
BsmI GAATGC 1 cut(s) 1006
BsnI GGCC 4 cut(s) 560, 723, 733, 856
Bso31I GGTCTC 2 cut(s) 314, 1052
Bsp119I TTCGAA 1 cut(s) 419
Bsp1286I GDGCHC 2 cut(s) 408, 941
Bsp13I TCCGGA 2 cut(s) 214, 289
Bsp1407I TGTACA 1 cut(s) 867
Bsp143I GATC 5 cut(s) 607, 759, 861, 879, 1053
Bsp19I CCATGG 2 cut(s) 428, 590
BspACI CCGC 7 cut(s) 117, 176, 188, 195, 209, 595, 989
BspANI GGCC 4 cut(s) 560, 723, 733, 856
BspCNI CTCAG 2 cut(s) 99, 1021
BspEI TCCGGA 2 cut(s) 214, 289
BspHI TCATGA 1 cut(s) 496
BspLI GGNNCC 4 cut(s) 42, 43, 79, 80
BspMAI CTGCAG 1 cut(s) 472
BspPI GGATC 2 cut(s) 887, 1061
BspT104I TTCGAA 1 cut(s) 419
BspTNI GGTCTC 2 cut(s) 314, 1052
BsrBI CCGCTC 1 cut(s) 197
BsrDI GCAATG 2 cut(s) 155, 1320
BsrGI TGTACA 1 cut(s) 867
BsrI ACTGG 4 cut(s) 200, 481, 540, 1163
BssECI CCNNGG 6 cut(s) 428, 590, 734, 1045, 1106, 1273
BssMI GATC 5 cut(s) 607, 759, 861, 879, 1053
BssT1I CCWWGG 4 cut(s) 428, 590, 734, 1106
Bst2UI CCWGG 2 cut(s) 701, 1275
Bst4CI ACNGT 3 cut(s) 227, 1030, 1219
Bst6I CTCTTC 2 cut(s) 94, 1152
BstAPI GCANNNNNTGC 1 cut(s) 23
BstAUI TGTACA 1 cut(s) 867
BstBAI YACGTR 1 cut(s) 1130
BstBI TTCGAA 1 cut(s) 419
BstC8I GCNNGC 6 cut(s) 7, 11, 15, 186, 558, 854
BstDEI CTNAG 2 cut(s) 107, 1008
BstDSI CCRYGG 2 cut(s) 428, 590
BstF5I GGATG 8 cut(s) 316, 744, 762, 893, 939, 997, 1055, 1288
BstH2I RGCGCY 1 cut(s) 123
BstHHI GCGC 4 cut(s) 122, 208, 508, 967
BstKTI GATC 5 cut(s) 610, 762, 864, 882, 1056
BstMAI GTCTC 4 cut(s) 314, 1052, 1149, 1290
BstMBI GATC 5 cut(s) 607, 759, 861, 879, 1053
BstMWI GCNNNNNNNGC 6 cut(s) 23, 194, 203, 227, 601, 1010
BstNI CCWGG 2 cut(s) 701, 1275
BstNSI RCATGY 2 cut(s) 634, 784
BstSCI CCNGG 3 cut(s) 699, 1045, 1273
BstSFI CTRYAG 1 cut(s) 468
BstV1I GCAGC 4 cut(s) 157, 667, 991, 1145
BstV2I GAAGAC 2 cut(s) 546, 1211
BstX2I RGATCY 1 cut(s) 879
BstYI RGATCY 1 cut(s) 879
BsuI GTATCC 1 cut(s) 637
BsuRI GGCC 4 cut(s) 560, 723, 733, 856
BtgI CCRYGG 2 cut(s) 428, 590
BtsCI GGATG 8 cut(s) 316, 744, 762, 893, 939, 997, 1055, 1288
BtsIMutI CAGTG 2 cut(s) 232, 1035
Cac8I GCNNGC 6 cut(s) 7, 11, 15, 186, 558, 854
CaiI CAGNNNCTG 1 cut(s) 476
CciI TCATGA 1 cut(s) 496
CfoI GCGC 4 cut(s) 122, 208, 508, 967
Cfr13I GGNCC 3 cut(s) 41, 78, 722
Csp6I GTAC 3 cut(s) 235, 868, 953
CviQI GTAC 3 cut(s) 235, 868, 953
DdeI CTNAG 2 cut(s) 107, 1008
DpnI GATC 5 cut(s) 609, 761, 863, 881, 1055
DpnII GATC 5 cut(s) 607, 759, 861, 879, 1053
EaeI YGGCCR 1 cut(s) 854
Eam1104I CTCTTC 2 cut(s) 94, 1152
EarI CTCTTC 2 cut(s) 94, 1152
Eco130I CCWWGG 4 cut(s) 428, 590, 734, 1106
Eco24I GRGCYC 1 cut(s) 408
Eco31I GGTCTC 2 cut(s) 314, 1052
Eco32I GATATC 2 cut(s) 923, 1075
Eco47I GGWCC 2 cut(s) 41, 78
Eco57I CTGAAG 1 cut(s) 326
EcoO109I RGGNCCY 2 cut(s) 41, 78
EcoRII CCWGG 2 cut(s) 699, 1273
EcoRV GATATC 2 cut(s) 923, 1075
EcoT14I CCWWGG 4 cut(s) 428, 590, 734, 1106
EcoT22I ATGCAT 1 cut(s) 400
EcoT38I GRGCYC 1 cut(s) 408
ErhI CCWWGG 4 cut(s) 428, 590, 734, 1106
FalI AAGNNNNNCTT 2 cut(s) 808, 840
FaqI GGGAC 3 cut(s) 54, 91, 478
Fnu4HI GCNGC 7 cut(s) 118, 146, 195, 209, 656, 1005, 1134
FokI GGATG 8 cut(s) 323, 751, 769, 900, 946, 1004, 1062, 1275
FriOI GRGCYC 1 cut(s) 408
Fsp4HI GCNGC 7 cut(s) 118, 146, 195, 209, 656, 1005, 1134
FspAI RTGCGCAY 1 cut(s) 507
FspI TGCGCA 1 cut(s) 507
GlaI GCGC 4 cut(s) 121, 207, 507, 966
GluI GCNGC 7 cut(s) 118, 146, 195, 209, 656, 1005, 1134
GsuI CTGGAG 1 cut(s) 183
HaeII RGCGCY 1 cut(s) 123
HaeIII GGCC 4 cut(s) 560, 723, 733, 856
HapII CCGG 3 cut(s) 215, 290, 1047
HhaI GCGC 4 cut(s) 122, 208, 508, 967
Hin6I GCGC 4 cut(s) 120, 206, 506, 965
HinP1I GCGC 4 cut(s) 120, 206, 506, 965
HinfI GANTC 8 cut(s) 72, 96, 135, 157, 680, 1111, 1278, 1283
HpaII CCGG 3 cut(s) 215, 290, 1047
HphI GGTGA 1 cut(s) 820
Hpy166II GTNNAC 4 cut(s) 766, 868, 955, 1231
Hpy188I TCNGA 6 cut(s) 51, 63, 108, 128, 330, 788
Hpy188III TCNNGA 9 cut(s) 76, 93, 215, 290, 319, 497, 982, 1057, 1151
Hpy8I GTNNAC 4 cut(s) 766, 868, 955, 1231
HpyAV CCTTC 2 cut(s) 301, 335
HpyCH4III ACNGT 3 cut(s) 227, 1030, 1219
HpyCH4IV ACGT 3 cut(s) 297, 1129, 1251
HpyF10VI GCNNNNNNNGC 6 cut(s) 23, 194, 203, 227, 601, 1010
HpyF3I CTNAG 2 cut(s) 107, 1008
HpySE526I ACGT 3 cut(s) 297, 1129, 1251
HspAI GCGC 4 cut(s) 120, 206, 506, 965
KflI GGGWCCC 2 cut(s) 41, 78
Kpn2I TCCGGA 2 cut(s) 214, 289
Kzo9I GATC 5 cut(s) 607, 759, 861, 879, 1053
LmnI GCTCC 1 cut(s) 202
Lsp1109I GCAGC 4 cut(s) 157, 667, 991, 1145
LweI GCATC 1 cut(s) 897
MaeII ACGT 3 cut(s) 297, 1129, 1251
MaeIII GTNAC 2 cut(s) 298, 472
MalI GATC 5 cut(s) 609, 761, 863, 881, 1055
MbiI CCGCTC 1 cut(s) 197
MboI GATC 5 cut(s) 607, 759, 861, 879, 1053
MboII GAAGA 5 cut(s) 81, 551, 823, 1139, 1216
MfeI CAATTG 1 cut(s) 245
MflI RGATCY 1 cut(s) 879
MhlI GDGCHC 2 cut(s) 408, 941
MlsI TGGCCA 1 cut(s) 856
MluNI TGGCCA 1 cut(s) 856
MlyI GAGTC 2 cut(s) 166, 1292
MmeI TCCRAC 1 cut(s) 529
MnlI CCTC 9 cut(s) 41, 57, 222, 453, 634, 978, 1073, 1171, 1234
Mox20I TGGCCA 1 cut(s) 856
Mph1103I ATGCAT 1 cut(s) 400
MroI TCCGGA 2 cut(s) 214, 289
MroXI GAANNNNTTC 1 cut(s) 782
MscI TGGCCA 1 cut(s) 856
MseI TTAA 4 cut(s) 600, 1020, 1296, 1305
MslI CAYNNNNRTG 2 cut(s) 501, 635
Msp20I TGGCCA 1 cut(s) 856
MspI CCGG 3 cut(s) 215, 290, 1047
MspR9I CCNGG 3 cut(s) 701, 1047, 1275
MunI CAATTG 1 cut(s) 245
Mva1269I GAATGC 1 cut(s) 1006
MvaI CCWGG 2 cut(s) 701, 1275
MwoI GCNNNNNNNGC 6 cut(s) 23, 194, 203, 227, 601, 1010
NciI CCSGG 1 cut(s) 1047
NcoI CCATGG 2 cut(s) 428, 590
NdeII GATC 5 cut(s) 607, 759, 861, 879, 1053
NlaIV GGNNCC 4 cut(s) 42, 43, 79, 80
NmeAIII GCCGAG 1 cut(s) 256
NsbI TGCGCA 1 cut(s) 507
NsiI ATGCAT 1 cut(s) 400
NspI RCATGY 2 cut(s) 634, 784
NspV TTCGAA 1 cut(s) 419
PagI TCATGA 1 cut(s) 496
PciI ACATGT 2 cut(s) 630, 780
PcsI WCGNNNNNNNCGW 1 cut(s) 768
PctI GAATGC 1 cut(s) 1006
PdmI GAANNNNTTC 1 cut(s) 782
PfeI GAWTC 6 cut(s) 72, 96, 135, 680, 1111, 1278
PkrI GCNGC 7 cut(s) 119, 147, 196, 210, 657, 1006, 1135
PleI GAGTC 2 cut(s) 165, 1291
PpsI GAGTC 2 cut(s) 165, 1291
Ppu21I YACGTR 1 cut(s) 1130
PpuMI RGGWCCY 2 cut(s) 41, 78
PscI ACATGT 2 cut(s) 630, 780
PsiI TTATAA 1 cut(s) 1122
Psp1406I AACGTT 1 cut(s) 297
Psp5II RGGWCCY 2 cut(s) 41, 78
Psp6I CCWGG 2 cut(s) 699, 1273
PspGI CCWGG 2 cut(s) 699, 1273
PspN4I GGNNCC 4 cut(s) 42, 43, 79, 80
PspPI GGNCC 3 cut(s) 41, 78, 722
PspPPI RGGWCCY 2 cut(s) 41, 78
PstI CTGCAG 1 cut(s) 472
PstNI CAGNNNCTG 1 cut(s) 476
PsuI RGATCY 1 cut(s) 879
RsaI GTAC 3 cut(s) 236, 869, 954
RsaNI GTAC 3 cut(s) 235, 868, 953
RseI CAYNNNNRTG 2 cut(s) 501, 635
SaqAI TTAA 4 cut(s) 600, 1020, 1296, 1305
SatI GCNGC 7 cut(s) 118, 146, 195, 209, 656, 1005, 1134
Sau3AI GATC 5 cut(s) 607, 759, 861, 879, 1053
Sau96I GGNCC 3 cut(s) 41, 78, 722
SchI GAGTC 2 cut(s) 166, 1292
ScrFI CCNGG 3 cut(s) 701, 1047, 1275
SduI GDGCHC 2 cut(s) 408, 941
SfaNI GCATC 1 cut(s) 897
SfcI CTRYAG 1 cut(s) 468
SfuI TTCGAA 1 cut(s) 419
SinI GGWCC 2 cut(s) 41, 78
SmiMI CAYNNNNRTG 2 cut(s) 501, 635
SsiI CCGC 7 cut(s) 117, 176, 188, 195, 209, 595, 989
StyD4I CCNGG 3 cut(s) 699, 1045, 1273
StyI CCWWGG 4 cut(s) 428, 590, 734, 1106
TaaI ACNGT 3 cut(s) 227, 1030, 1219
TaiI ACGT 3 cut(s) 300, 1132, 1254
TaqI TCGA 6 cut(s) 155, 318, 419, 771, 1056, 1281
TaqII GACCGA 1 cut(s) 805
TatI WGTACW 2 cut(s) 234, 867
TauI GCSGC 3 cut(s) 120, 197, 211
TfiI GAWTC 6 cut(s) 72, 96, 135, 680, 1111, 1278
Tru1I TTAA 4 cut(s) 600, 1020, 1296, 1305
Tru9I TTAA 4 cut(s) 600, 1020, 1296, 1305
TscAI CASTG 2 cut(s) 232, 1035
TseI GCWGC 4 cut(s) 145, 655, 1004, 1133
TspDTI ATGAA 3 cut(s) 672, 1187, 1217
TspGWI ACGGA 1 cut(s) 286
TspRI CASTG 2 cut(s) 232, 1035
VpaK11BI GGWCC 2 cut(s) 41, 78
XapI RAATTY 1 cut(s) 19
XceI RCATGY 2 cut(s) 634, 784
XcmI CCANNNNNNNNNTGG 2 cut(s) 588, 732
XmnI GAANNNNTTC 1 cut(s) 782
Zsp2I ATGCAT 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.