Rmu_sc0009759.1_g000002

Omega-6 fatty acid desaturase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009759.1
Physical Location & Seq
Forward (+)
17238 .. 21753
4516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009759.1_g000002.1.cds

Sequence Viewer

Length: 1614 bp
atgatcaacgtcactgccgctccagtccggtggaatgcacaaccactcatcaccaaagctacagatcgagggcatgcctcttcttgcttcaccgccggtagcgtccaagcgaagcccctcacctgcaaagcctccatcaagcccaaaccttcgttcgtcagcgacgatttcagatgggctcgatttagggaagaacacttacgtcgccttaacaaggaggtcatggtaggtaaaaagcctagccttggcctcttggaggagaaggcaacagtcatgctcaatgagtctgatgaagcggagatcggaatagattctatgttactttccaagggcccctatcataagccaattcgaagccagagagttggagcccatttttcttcaggaatctgctatttgaaatgggacaaccatctccaaaagggtatcaaacatcagcagtgtcctcctagaaatcggaggacctttgtacaagcgattgccattccagttgcaccatcttcaccagacagtgctgagtacagaaaacaattatctgaaagttatggtttcaaacaaattggagaaccactcccggacaatgttacgctaaaggatgtcattgattcccttccaaaaaaggtgtttgagattgatgatgtgaaagcatggaagtcagttctaatatctgccacttcctatgcaattgggctctttttgatttcaaaagccccatggtatcttctccctgttgcgtgggcatggacagggactgcagttactgggttttttgttataggccatgattgtgcgcacaaatcattctcaagaaacaaattagtggaagacattgttgggacgctggcctttttgccattgatatatccatacgaaccatggaggtttaagcatgataggcatcatgcaaaaacgaacatgttggttgaagatacagcttggcaacctattccgaaagaagagtttgattcatcccctttgttgcgaaaggcaattatttatggatatggcccattgcgtccttggatgtcaatagctcactggtggctcgtccacttcaatttgaagaagttcagaacaagtgaagttaaaagggctgctataagtttggcttgtgtttttgcgtttatggggattggatggcctctaattgtgtacaagacggggatcatgggatgggtaaagttttggttgatgccatggttgggctaccacttttggatgagtacattcacaatggttcatcatacggcccctcatatacctttcaaatctgcggatgagtggaatgctgctcaggctcagattaacggaacagttcattgtgactacccctcgtggatcgagatcctctgccatgatatcaatgtccatataccccatcatatatctccaaggattccaagctataacttacgagcagctcataagtctatccaagaaaactggggaaagtatctgaacgaggctacatggaattggcgcttgatgaagacgataatgacagtgtgccatgtttacaacaaggaggagaactacattccatttgacgaacttgccccagaagactctcttccgattgcattcctcaaaaaagtgatgcctgattatgcttga

Protein Analysis

537

Amino Acids

61.57

Weight (kDa)

9.18

Isoelectric Point (pI)

45.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016050)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30950
fragaria_vesca FvH4_1g01030
malus_domestica MD15G1152700.v1.1
prunus_persica Prupe.7G261900_v2.0.a1
pyrus_communis pycom15g13730
rosa_chinensis RchiOBHm_Chr2g0085771
rosa_laevigata RLG00000015718
rosa_multiflora Rmu_sc0009759.1_g000002
rosa_roxburghii Rroxscaffold_2G00155050
rosa_rugosa Rorug01G0463000
rosa_samantha Rh2AG012300 Rh2BG012900 Rh2CG013600 Rh2DG014600
rosa_wichuraiana Rw2G001090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 131
Acc16I TGCGCA 1 cut(s) 792
Acc36I ACCTGC 1 cut(s) 131
AccBSI CCGCTC 1 cut(s) 20
AciI CCGC 4 cut(s) 18, 93, 296, 1274
AclWI GGATC 3 cut(s) 1172, 1339, 1346
AcuI CTGAAG 1 cut(s) 366
AfaI GTAC 4 cut(s) 471, 521, 1154, 1225
AfiI CCNNNNNNNGG 4 cut(s) 214, 245, 256, 1202
AflIII ACRYGT 1 cut(s) 915
AgsI TTSAA 7 cut(s) 400, 553, 705, 926, 1057, 1063, 1267
AjuI GAANNNNNNNTTGG 4 cut(s) 137, 169, 816, 848
AluBI AGCT 5 cut(s) 59, 935, 1034, 1404, 1421
AluI AGCT 5 cut(s) 59, 935, 1034, 1404, 1421
AlwI GGATC 3 cut(s) 1172, 1339, 1346
AlwNI CAGNNNCTG 2 cut(s) 752, 761
AoxI GGCC 7 cut(s) 247, 331, 778, 843, 1006, 1139, 1248
ApaI GGGCCC 1 cut(s) 335
ApeKI GCWGC 3 cut(s) 1094, 1289, 1418
Asp700I GAANNNNTTC 2 cut(s) 310, 1067
AspLEI GCGC 2 cut(s) 793, 1482
AspS9I GGNCC 5 cut(s) 331, 332, 462, 1007, 1249
AsuC2I CCSGG 1 cut(s) 575
AsuHPI GGTGA 4 cut(s) 43, 82, 112, 495
AsuII TTCGAA 1 cut(s) 352
AvaII GGWCC 1 cut(s) 462
BaeGI GKGCMC 1 cut(s) 335
BanII GRGCYC 4 cut(s) 181, 335, 373, 693
BarI GAAGNNNNNNTAC 2 cut(s) 183, 215
BauI CACGAG 1 cut(s) 1333
BbsI GAAGAC 3 cut(s) 831, 1496, 1569
BbvI GCAGC 3 cut(s) 1081, 1276, 1430
BccI CCATC 7 cut(s) 143, 168, 420, 505, 1131, 1167, 1386
BceAI ACGGC 1 cut(s) 1263
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 1 cut(s) 575
BfaI CTAG 2 cut(s) 240, 450
BfmI CTRYAG 2 cut(s) 60, 753
BfoI RGCGCY 1 cut(s) 1483
BfuAI ACCTGC 1 cut(s) 131
BisI GCNGC 4 cut(s) 18, 1095, 1290, 1419
BlsI GCNGC 4 cut(s) 19, 1096, 1291, 1420
Bme1390I CCNGG 1 cut(s) 575
Bme18I GGWCC 1 cut(s) 462
BmgT120I GGNCC 5 cut(s) 331, 332, 462, 1007, 1249
BmiI GGNNCC 4 cut(s) 333, 334, 370, 1251
BmrFI CCNGG 1 cut(s) 575
BmrI ACTGGG 2 cut(s) 771, 1453
BmsI GCATC 3 cut(s) 907, 1182, 1587
BmuI ACTGGG 2 cut(s) 771, 1453
BpiI GAAGAC 3 cut(s) 831, 1496, 1569
BplI GAGNNNNNCTC 2 cut(s) 555, 587
BpmI CTGGAG 1 cut(s) 6
Bpu10I CCTNAGC 1 cut(s) 1293
Bpu14I TTCGAA 1 cut(s) 352
BpuEI CTTGAG 1 cut(s) 790
BpuMI CCSGG 1 cut(s) 575
BsaBI GATNNNNATC 2 cut(s) 897, 1343
BsaJI CCNNGG 7 cut(s) 244, 327, 713, 875, 1019, 1196, 1391
BsaWI WCCGGW 1 cut(s) 27
BsaXI ACNNNNNCTCC 1 cut(s) 34
Bsc4I CCNNNNNNNGG 4 cut(s) 214, 245, 256, 1202
Bse118I RCCGGY 1 cut(s) 95
Bse1I ACTGG 5 cut(s) 23, 488, 766, 1043, 1448
Bse3DI GCAATG 1 cut(s) 1010
Bse8I GATNNNNATC 2 cut(s) 897, 1343
BseDI CCNNGG 7 cut(s) 244, 327, 713, 875, 1019, 1196, 1391
BseGI GGATG 7 cut(s) 601, 968, 1029, 1142, 1178, 1224, 1282
BseJI GATNNNNATC 2 cut(s) 897, 1343
BseLI CCNNNNNNNGG 4 cut(s) 214, 245, 256, 1202
BseMI GCAATG 1 cut(s) 1010
BseMII CTCAG 3 cut(s) 507, 1307, 1313
BseNI ACTGG 5 cut(s) 23, 488, 766, 1043, 1448
BseRI GAGGAG 2 cut(s) 272, 1541
BseSI GKGCMC 1 cut(s) 335
BseXI GCAGC 3 cut(s) 1081, 1276, 1430
BshFI GGCC 7 cut(s) 249, 333, 780, 845, 1008, 1141, 1250
BsiSI CCGG 3 cut(s) 28, 96, 575
BslFI GGGAC 3 cut(s) 419, 763, 850
BslI CCNNNNNNNGG 4 cut(s) 214, 245, 256, 1202
BsmFI GGGAC 3 cut(s) 419, 763, 850
BsmI GAATGC 3 cut(s) 40, 1291, 1580
BsnI GGCC 7 cut(s) 249, 333, 780, 845, 1008, 1141, 1250
Bsp119I TTCGAA 1 cut(s) 352
Bsp120I GGGCCC 1 cut(s) 331
Bsp1286I GDGCHC 4 cut(s) 181, 335, 373, 693
Bsp1407I TGTACA 2 cut(s) 469, 1152
Bsp143I GATC 6 cut(s) 3, 64, 300, 1164, 1338, 1344
Bsp19I CCATGG 3 cut(s) 713, 875, 1196
BspACI CCGC 4 cut(s) 18, 93, 296, 1274
BspANI GGCC 7 cut(s) 249, 333, 780, 845, 1008, 1141, 1250
BspCNI CTCAG 3 cut(s) 508, 1306, 1312
BspLI GGNNCC 4 cut(s) 333, 334, 370, 1251
BspMAI CTGCAG 1 cut(s) 757
BspMI ACCTGC 1 cut(s) 131
BspPI GGATC 3 cut(s) 1172, 1339, 1346
BspT104I TTCGAA 1 cut(s) 352
BsrBI CCGCTC 1 cut(s) 20
BsrDI GCAATG 1 cut(s) 1010
BsrFI RCCGGY 1 cut(s) 95
BsrGI TGTACA 2 cut(s) 469, 1152
BsrI ACTGG 5 cut(s) 23, 488, 766, 1043, 1448
BssAI RCCGGY 1 cut(s) 95
BssECI CCNNGG 7 cut(s) 244, 327, 713, 875, 1019, 1196, 1391
BssMI GATC 6 cut(s) 3, 64, 300, 1164, 1338, 1344
BssSI CACGAG 1 cut(s) 1333
BssT1I CCWWGG 7 cut(s) 244, 327, 713, 875, 1019, 1196, 1391
Bst2BI CACGAG 1 cut(s) 1333
Bst4CI ACNGT 4 cut(s) 271, 512, 1315, 1504
Bst6I CTCTTC 3 cut(s) 85, 951, 1575
BstAUI TGTACA 2 cut(s) 469, 1152
BstBI TTCGAA 1 cut(s) 352
BstC8I GCNNGC 2 cut(s) 75, 843
BstDEI CTNAG 3 cut(s) 516, 1293, 1299
BstDSI CCRYGG 3 cut(s) 713, 875, 1196
BstENI CCTNNNNNAGG 2 cut(s) 212, 254
BstF5I GGATG 7 cut(s) 601, 968, 1029, 1142, 1178, 1224, 1282
BstH2I RGCGCY 1 cut(s) 1483
BstHHI GCGC 2 cut(s) 793, 1482
BstKTI GATC 6 cut(s) 6, 67, 303, 1167, 1341, 1347
BstMBI GATC 6 cut(s) 3, 64, 300, 1164, 1338, 1344
BstMWI GCNNNNNNNGC 2 cut(s) 895, 1295
BstNSI RCATGY 2 cut(s) 77, 919
BstSCI CCNGG 1 cut(s) 573
BstSFI CTRYAG 2 cut(s) 60, 753
BstSLI GKGCMC 1 cut(s) 335
BstV1I GCAGC 3 cut(s) 1081, 1276, 1430
BstV2I GAAGAC 3 cut(s) 831, 1496, 1569
BstX2I RGATCY 1 cut(s) 1344
BstXI CCANNNNNNTGG 2 cut(s) 30, 365
BstYI RGATCY 1 cut(s) 1344
BsuRI GGCC 7 cut(s) 249, 333, 780, 845, 1008, 1141, 1250
BtgI CCRYGG 3 cut(s) 713, 875, 1196
BtsCI GGATG 7 cut(s) 601, 968, 1029, 1142, 1178, 1224, 1282
BtsI GCAGTG 2 cut(s) 12, 446
BtsIMutI CAGTG 5 cut(s) 12, 446, 517, 1036, 1509
BveI ACCTGC 1 cut(s) 131
Cac8I GCNNGC 2 cut(s) 75, 843
CaiI CAGNNNCTG 2 cut(s) 752, 761
CfoI GCGC 2 cut(s) 793, 1482
Cfr10I RCCGGY 1 cut(s) 95
Cfr13I GGNCC 5 cut(s) 331, 332, 462, 1007, 1249
CseI GACGC 3 cut(s) 91, 847, 1004
Csp6I GTAC 4 cut(s) 470, 520, 1153, 1224
CviQI GTAC 4 cut(s) 470, 520, 1153, 1224
DdeI CTNAG 3 cut(s) 516, 1293, 1299
DpnI GATC 6 cut(s) 5, 66, 302, 1166, 1340, 1346
DpnII GATC 6 cut(s) 3, 64, 300, 1164, 1338, 1344
Eam1104I CTCTTC 3 cut(s) 85, 951, 1575
EarI CTCTTC 3 cut(s) 85, 951, 1575
Eco130I CCWWGG 7 cut(s) 244, 327, 713, 875, 1019, 1196, 1391
Eco24I GRGCYC 4 cut(s) 181, 335, 373, 693
Eco32I GATATC 1 cut(s) 1360
Eco47I GGWCC 1 cut(s) 462
Eco57I CTGAAG 1 cut(s) 366
EcoNI CCTNNNNNAGG 2 cut(s) 212, 254
EcoO109I RGGNCCY 3 cut(s) 331, 332, 462
EcoRV GATATC 1 cut(s) 1360
EcoT14I CCWWGG 7 cut(s) 244, 327, 713, 875, 1019, 1196, 1391
EcoT38I GRGCYC 4 cut(s) 181, 335, 373, 693
ErhI CCWWGG 7 cut(s) 244, 327, 713, 875, 1019, 1196, 1391
FalI AAGNNNNNCTT 4 cut(s) 1093, 1125, 1554, 1586
FaqI GGGAC 3 cut(s) 419, 763, 850
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 4 cut(s) 18, 1095, 1290, 1419
FokI GGATG 7 cut(s) 608, 955, 1036, 1149, 1185, 1231, 1289
FriOI GRGCYC 4 cut(s) 181, 335, 373, 693
Fsp4HI GCNGC 4 cut(s) 18, 1095, 1290, 1419
FspAI RTGCGCAY 1 cut(s) 792
FspBI CTAG 2 cut(s) 240, 450
FspI TGCGCA 1 cut(s) 792
GlaI GCGC 2 cut(s) 792, 1481
GluI GCNGC 4 cut(s) 18, 1095, 1290, 1419
GsuI CTGGAG 1 cut(s) 6
HaeII RGCGCY 1 cut(s) 1483
HaeIII GGCC 7 cut(s) 249, 333, 780, 845, 1008, 1141, 1250
HapII CCGG 3 cut(s) 28, 96, 575
HgaI GACGC 3 cut(s) 91, 847, 1004
HhaI GCGC 2 cut(s) 793, 1482
Hin6I GCGC 2 cut(s) 791, 1480
HinP1I GCGC 2 cut(s) 791, 1480
HinfI GANTC 7 cut(s) 284, 311, 387, 605, 965, 1396, 1565
HpaII CCGG 3 cut(s) 28, 96, 575
HphI GGTGA 4 cut(s) 43, 82, 112, 495
Hpy166II GTNNAC 3 cut(s) 1051, 1153, 1516
Hpy188III TCNNGA 3 cut(s) 384, 807, 1342
Hpy8I GTNNAC 3 cut(s) 1051, 1153, 1516
Hpy99I CGWCG 2 cut(s) 167, 207
HpyAV CCTTC 3 cut(s) 159, 256, 620
HpyCH4III ACNGT 4 cut(s) 271, 512, 1315, 1504
HpyCH4IV ACGT 2 cut(s) 9, 202
HpyCH4V TGCA 7 cut(s) 38, 126, 494, 683, 755, 905, 1580
HpyF10VI GCNNNNNNNGC 2 cut(s) 895, 1295
HpyF3I CTNAG 3 cut(s) 516, 1293, 1299
HpySE526I ACGT 2 cut(s) 9, 202
HspAI GCGC 2 cut(s) 791, 1480
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 6 cut(s) 3, 64, 300, 1164, 1338, 1344
LmnI GCTCC 2 cut(s) 25, 368
Lsp1109I GCAGC 3 cut(s) 1081, 1276, 1430
LweI GCATC 3 cut(s) 907, 1182, 1587
MaeI CTAG 2 cut(s) 240, 450
MaeII ACGT 2 cut(s) 9, 202
MaeIII GTNAC 5 cut(s) 10, 318, 583, 757, 1322
MalI GATC 6 cut(s) 5, 66, 302, 1166, 1340, 1346
MbiI CCGCTC 1 cut(s) 20
MboI GATC 6 cut(s) 3, 64, 300, 1164, 1338, 1344
MfeI CAATTG 1 cut(s) 684
MflI RGATCY 1 cut(s) 1344
MhlI GDGCHC 4 cut(s) 181, 335, 373, 693
MluCI AATT 9 cut(s) 348, 530, 558, 684, 815, 990, 1057, 1146, 1474
MlyI GAGTC 2 cut(s) 293, 1559
MmeI TCCRAC 1 cut(s) 346
MroXI GAANNNNTTC 2 cut(s) 310, 1067
MseI TTAA 4 cut(s) 210, 885, 1086, 1305
MslI CAYNNNNRTG 1 cut(s) 786
MspI CCGG 3 cut(s) 28, 96, 575
MspR9I CCNGG 1 cut(s) 575
MunI CAATTG 1 cut(s) 684
Mva1269I GAATGC 3 cut(s) 40, 1291, 1580
MwoI GCNNNNNNNGC 2 cut(s) 895, 1295
NciI CCSGG 1 cut(s) 575
NcoI CCATGG 3 cut(s) 713, 875, 1196
NdeII GATC 6 cut(s) 3, 64, 300, 1164, 1338, 1344
NlaIV GGNNCC 4 cut(s) 333, 334, 370, 1251
NmuCI GTSAC 2 cut(s) 10, 1322
NsbI TGCGCA 1 cut(s) 792
NspI RCATGY 2 cut(s) 77, 919
NspV TTCGAA 1 cut(s) 352
PaeI GCATGC 1 cut(s) 77
PaqCI CACCTGC 1 cut(s) 131
PciI ACATGT 1 cut(s) 915
PcsI WCGNNNNNNNCGW 1 cut(s) 162
PctI GAATGC 3 cut(s) 40, 1291, 1580
PdmI GAANNNNTTC 2 cut(s) 310, 1067
PfeI GAWTC 5 cut(s) 311, 387, 605, 965, 1396
PfoI TCCNGGA 1 cut(s) 573
PkrI GCNGC 4 cut(s) 19, 1096, 1291, 1420
PleI GAGTC 2 cut(s) 292, 1559
PpsI GAGTC 2 cut(s) 292, 1559
PpuMI RGGWCCY 1 cut(s) 462
PscI ACATGT 1 cut(s) 915
Psp5II RGGWCCY 1 cut(s) 462
PspN4I GGNNCC 4 cut(s) 333, 334, 370, 1251
PspOMI GGGCCC 1 cut(s) 331
PspPI GGNCC 5 cut(s) 331, 332, 462, 1007, 1249
PspPPI RGGWCCY 1 cut(s) 462
PstI CTGCAG 1 cut(s) 757
PstNI CAGNNNCTG 2 cut(s) 752, 761
PsuI RGATCY 1 cut(s) 1344
RsaI GTAC 4 cut(s) 471, 521, 1154, 1225
RsaNI GTAC 4 cut(s) 470, 520, 1153, 1224
RseI CAYNNNNRTG 1 cut(s) 786
SaqAI TTAA 4 cut(s) 210, 885, 1086, 1305
SatI GCNGC 4 cut(s) 18, 1095, 1290, 1419
Sau3AI GATC 6 cut(s) 3, 64, 300, 1164, 1338, 1344
Sau96I GGNCC 5 cut(s) 331, 332, 462, 1007, 1249
SchI GAGTC 2 cut(s) 293, 1559
ScrFI CCNGG 1 cut(s) 575
SduI GDGCHC 4 cut(s) 181, 335, 373, 693
SfaNI GCATC 3 cut(s) 907, 1182, 1587
SfcI CTRYAG 2 cut(s) 60, 753
SfuI TTCGAA 1 cut(s) 352
SinI GGWCC 1 cut(s) 462
SmiMI CAYNNNNRTG 1 cut(s) 786
SmlI CTYRAG 1 cut(s) 805
SmoI CTYRAG 1 cut(s) 805
SphI GCATGC 1 cut(s) 77
Sse9I AATT 9 cut(s) 348, 530, 558, 684, 815, 990, 1057, 1146, 1474
SsiI CCGC 4 cut(s) 18, 93, 296, 1274
SspMI CTAG 2 cut(s) 240, 450
StyD4I CCNGG 1 cut(s) 573
StyI CCWWGG 7 cut(s) 244, 327, 713, 875, 1019, 1196, 1391
TaaI ACNGT 4 cut(s) 271, 512, 1315, 1504
TaiI ACGT 2 cut(s) 12, 205
TaqI TCGA 4 cut(s) 67, 181, 352, 1341
TasI AATT 9 cut(s) 348, 530, 558, 684, 815, 990, 1057, 1146, 1474
TatI WGTACW 4 cut(s) 469, 519, 1152, 1223
TauI GCSGC 1 cut(s) 20
TfiI GAWTC 5 cut(s) 311, 387, 605, 965, 1396
Tru1I TTAA 4 cut(s) 210, 885, 1086, 1305
Tru9I TTAA 4 cut(s) 210, 885, 1086, 1305
TscAI CASTG 5 cut(s) 19, 446, 517, 1043, 1509
TseFI GTSAC 2 cut(s) 10, 1322
TseI GCWGC 3 cut(s) 1094, 1289, 1418
Tsp45I GTSAC 2 cut(s) 10, 1322
TspDTI ATGAA 5 cut(s) 306, 957, 1229, 1307, 1502
TspGWI ACGGA 1 cut(s) 1323
TspRI CASTG 5 cut(s) 19, 446, 517, 1043, 1509
VpaK11BI GGWCC 1 cut(s) 462
XagI CCTNNNNNAGG 2 cut(s) 212, 254
XceI RCATGY 2 cut(s) 77, 919
XcmI CCANNNNNNNNNTGG 2 cut(s) 873, 1017
XmnI GAANNNNTTC 2 cut(s) 310, 1067
XspI CTAG 2 cut(s) 240, 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.