Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0016050

Physical Location & Seq

Genomic Coordinates Reverse (-)

966901 .. 970844

Gene Structure 3944 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG012300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGAGTTCTTATTCTGTTTCTGGTTTTGAGTTTCAGGGCCCCTATCATAAGCCAATTCGAAGCCAGAGAGTTGGAGCCCATTTTTCCTCAGGAATCTGCTTTTTGAAATGGGACAACCATCTCCAAAAGGGTATCAAACATCAGCAGTGTTCTCCTAGAAATCGGAGGACCTTTGTACAAGCAATTGCCATTCCAGTTGCACCATCTTCACCAGACAGTGCTGAGTACAGAAAACAATTATCTGAAAGTTATGGTTTCAAACAAATTGGAGAACCACTCCCGGACAATGTTACGCTAAAGGATGTCATTGATTCCCTTCCAAAAAAGGTGTTTGAGATTGATGATGTGAAAGCATGGAAGTCAGTTCTAATATCTGCCACTTCCTATGCAATTGGGCTCTTTTTGATTTCAAAAGCCCCATGGTATCTTCTCCCTGTTGCGTGGGCATGGACAGGGACTGCAGTTACTGGGTTTTTTGTTATAGGCCATGATTGTGCGCACAAATCATTCTCAAGAAACAAATTAGTGGAAGACATTGTTGGGACGCTGGCCTTTTTGCCATTGATATATCCATACGAACCATGGAGGTTTAAGCATGATAGGCATCATGCAAAAACGAACATGTTGGTTGAAGATACAGCTTGGCAGCCTATTCCGAAAGAAGAGTTTGATTCATCCCCTTTGTTGCGAAAGGCAATTATTTATGGATATGGCCCATTGCGTCCTTGGATGTCAATAGCTCACTGGTGGCTCGTCCACTTCAATTTGAAGAAGTTCAGAACAAGTGAAGTTAAAAGGGCTGCTATAAGTTTGGCTTGTGTTTTTGCGTTTATGGGGATTGGATGGCCTCTAATTGTGTACAAGACGGGGATCATGGGATGGGTAAAGTTTTGGTTGATGCCATGGTTGGGCTACCACTTTTGGATGAGTACATTCACAATGGTTCATCATACGGCCCCTCATATACCTTTCAAATCTGCGGATGAGTGGAATGCTGCTCAGGCTCAGATTAACGGAACAGTTCATTGTGACTACCCCTCGTGGATCGAGATCCTCTGCCATGATATCAATGTCCATATACCCCATCATATATCTCCAAGGATTCCAAGCTATAACTTACGAGCAGCTCATAAGTCTATCCAAGAAAACTGGGGAAAGTATCTGAACGAGGCTACATGGAATTGGCGCTTGATGAAGACGATAATGACAGTGTGCCATGTTTACAACAAGGAGGAGAACTACATTCCATTTGACGAACTTGCCCCAGAAGACTCTCTTCCGATTGCATTCCTCAAAAAAGTGATGCCTGATTATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009642 GO:0009644 GO:0009892 GO:0009941 GO:0009987 GO:0010109 GO:0010205 GO:0016053 GO:0019222 GO:0019752 GO:0019904 GO:0031323 GO:0031324 GO:0031967 GO:0031975 GO:0032787 GO:0042548 GO:0043155 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043467 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0072330 GO:1901576 GO:1905156

KEGG Pathways

Metabolic & Signaling

ko02020 map02020

Pfam Domains

Protein Families

FA_desaturase

Protein Analysis

439

Amino Acids

50.72

Weight (kDa)

9.01

Isoelectric Point (pI)

46.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_desaturase	PF00487	140 - 388	9e-33	Fatty acid desaturase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Tree File

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Orthologous Genes (Group: OG0016050)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30950
fragaria_vesca	FvH4_1g01030
malus_domestica	MD15G1152700.v1.1
prunus_persica	Prupe.7G261900_v2.0.a1
pyrus_communis	pycom15g13730
rosa_chinensis	RchiOBHm_Chr2g0085771
rosa_laevigata	RLG00000015718
rosa_multiflora	Rmu_sc0009759.1_g000002
rosa_roxburghii	Rroxscaffold_2G00155050
rosa_rugosa	Rorug01G0463000
rosa_samantha	Rh2AG012300 Rh2BG012900 Rh2CG013600 Rh2DG014600
rosa_wichuraiana	Rw2G001090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	498
AciI	CCGC	1 cut(s)	980
AclWI	GGATC	3 cut(s)	878, 1045, 1052
AfaI	GTAC	4 cut(s)	177, 227, 860, 931
AfiI	CCNNNNNNNGG	1 cut(s)	908
AflIII	ACRYGT	1 cut(s)	621
AgsI	TTSAA	7 cut(s)	106, 259, 411, 632, 763, 769, 973
AjuI	GAANNNNNNNTTGG	2 cut(s)	522, 554
AluBI	AGCT	4 cut(s)	641, 740, 1110, 1127
AluI	AGCT	4 cut(s)	641, 740, 1110, 1127
AlwI	GGATC	3 cut(s)	878, 1045, 1052
AlwNI	CAGNNNCTG	2 cut(s)	458, 467
AoxI	GGCC	6 cut(s)	37, 484, 549, 712, 845, 954
ApaI	GGGCCC	1 cut(s)	41
ApeKI	GCWGC	4 cut(s)	646, 800, 995, 1124
Asp700I	GAANNNNTTC	1 cut(s)	773
AspLEI	GCGC	2 cut(s)	499, 1188
AspS9I	GGNCC	5 cut(s)	37, 38, 168, 713, 955
AsuC2I	CCSGG	1 cut(s)	281
AsuHPI	GGTGA	1 cut(s)	201
AsuII	TTCGAA	1 cut(s)	58
AvaII	GGWCC	1 cut(s)	168
AxyI	CCTNAGG	1 cut(s)	88
BaeGI	GKGCMC	1 cut(s)	41
BanII	GRGCYC	3 cut(s)	41, 79, 399
BauI	CACGAG	1 cut(s)	1039
BbsI	GAAGAC	3 cut(s)	537, 1202, 1275
BbvI	GCAGC	4 cut(s)	658, 787, 982, 1136
BccI	CCATC	5 cut(s)	126, 211, 837, 873, 1092
BceAI	ACGGC	1 cut(s)	969
BcnI	CCSGG	1 cut(s)	281
BfaI	CTAG	1 cut(s)	156
BfmI	CTRYAG	1 cut(s)	459
BfoI	RGCGCY	1 cut(s)	1189
BisI	GCNGC	4 cut(s)	647, 801, 996, 1125
BlsI	GCNGC	4 cut(s)	648, 802, 997, 1126
Bme1390I	CCNGG	1 cut(s)	281
Bme18I	GGWCC	1 cut(s)	168
BmgT120I	GGNCC	5 cut(s)	37, 38, 168, 713, 955
BmiI	GGNNCC	4 cut(s)	39, 40, 76, 957
BmrFI	CCNGG	1 cut(s)	281
BmrI	ACTGGG	2 cut(s)	477, 1159
BmsI	GCATC	3 cut(s)	613, 888, 1293
BmuI	ACTGGG	2 cut(s)	477, 1159
BpiI	GAAGAC	3 cut(s)	537, 1202, 1275
BplI	GAGNNNNNCTC	2 cut(s)	261, 293
Bpu10I	CCTNAGC	1 cut(s)	999
Bpu14I	TTCGAA	1 cut(s)	58
BpuEI	CTTGAG	1 cut(s)	496
BpuMI	CCSGG	1 cut(s)	281
BsaBI	GATNNNNATC	2 cut(s)	603, 1049
BsaJI	CCNNGG	5 cut(s)	419, 581, 725, 902, 1097
Bsc4I	CCNNNNNNNGG	1 cut(s)	908
Bse1I	ACTGG	4 cut(s)	194, 472, 749, 1154
Bse21I	CCTNAGG	1 cut(s)	88
Bse3DI	GCAATG	1 cut(s)	716
Bse8I	GATNNNNATC	2 cut(s)	603, 1049
BseDI	CCNNGG	5 cut(s)	419, 581, 725, 902, 1097
BseGI	GGATG	7 cut(s)	307, 674, 735, 848, 884, 930, 988
BseJI	GATNNNNATC	2 cut(s)	603, 1049
BseLI	CCNNNNNNNGG	1 cut(s)	908
BseMI	GCAATG	1 cut(s)	716
BseMII	CTCAG	4 cut(s)	102, 213, 1013, 1019
BseNI	ACTGG	4 cut(s)	194, 472, 749, 1154
BseRI	GAGGAG	1 cut(s)	1247
BseSI	GKGCMC	1 cut(s)	41
BseXI	GCAGC	4 cut(s)	658, 787, 982, 1136
BshFI	GGCC	6 cut(s)	39, 486, 551, 714, 847, 956
BsiSI	CCGG	1 cut(s)	281
BslFI	GGGAC	3 cut(s)	125, 469, 556
BslI	CCNNNNNNNGG	1 cut(s)	908
BsmFI	GGGAC	3 cut(s)	125, 469, 556
BsmI	GAATGC	2 cut(s)	997, 1286
BsnI	GGCC	6 cut(s)	39, 486, 551, 714, 847, 956
Bsp119I	TTCGAA	1 cut(s)	58
Bsp120I	GGGCCC	1 cut(s)	37
Bsp1286I	GDGCHC	3 cut(s)	41, 79, 399
Bsp1407I	TGTACA	2 cut(s)	175, 858
Bsp143I	GATC	3 cut(s)	870, 1044, 1050
Bsp19I	CCATGG	3 cut(s)	419, 581, 902
BspACI	CCGC	1 cut(s)	980
BspANI	GGCC	6 cut(s)	39, 486, 551, 714, 847, 956
BspCNI	CTCAG	4 cut(s)	101, 214, 1012, 1018
BspLI	GGNNCC	4 cut(s)	39, 40, 76, 957
BspMAI	CTGCAG	1 cut(s)	463
BspPI	GGATC	3 cut(s)	878, 1045, 1052
BspT104I	TTCGAA	1 cut(s)	58
BsrDI	GCAATG	1 cut(s)	716
BsrGI	TGTACA	2 cut(s)	175, 858
BsrI	ACTGG	4 cut(s)	194, 472, 749, 1154
BssECI	CCNNGG	5 cut(s)	419, 581, 725, 902, 1097
BssMI	GATC	3 cut(s)	870, 1044, 1050
BssSI	CACGAG	1 cut(s)	1039
BssT1I	CCWWGG	5 cut(s)	419, 581, 725, 902, 1097
Bst2BI	CACGAG	1 cut(s)	1039
Bst4CI	ACNGT	3 cut(s)	218, 1021, 1210
Bst6I	CTCTTC	2 cut(s)	657, 1281
BstAUI	TGTACA	2 cut(s)	175, 858
BstBI	TTCGAA	1 cut(s)	58
BstC8I	GCNNGC	1 cut(s)	549
BstDEI	CTNAG	4 cut(s)	88, 222, 999, 1005
BstDSI	CCRYGG	3 cut(s)	419, 581, 902
BstF5I	GGATG	7 cut(s)	307, 674, 735, 848, 884, 930, 988
BstH2I	RGCGCY	1 cut(s)	1189
BstHHI	GCGC	2 cut(s)	499, 1188
BstKTI	GATC	3 cut(s)	873, 1047, 1053
BstMBI	GATC	3 cut(s)	870, 1044, 1050
BstMWI	GCNNNNNNNGC	2 cut(s)	601, 1001
BstNSI	RCATGY	1 cut(s)	625
BstSCI	CCNGG	1 cut(s)	279
BstSFI	CTRYAG	1 cut(s)	459
BstSLI	GKGCMC	1 cut(s)	41
BstV1I	GCAGC	4 cut(s)	658, 787, 982, 1136
BstV2I	GAAGAC	3 cut(s)	537, 1202, 1275
BstX2I	RGATCY	1 cut(s)	1050
BstXI	CCANNNNNNTGG	1 cut(s)	71
BstYI	RGATCY	1 cut(s)	1050
Bsu36I	CCTNAGG	1 cut(s)	88
BsuRI	GGCC	6 cut(s)	39, 486, 551, 714, 847, 956
BtgI	CCRYGG	3 cut(s)	419, 581, 902
BtsCI	GGATG	7 cut(s)	307, 674, 735, 848, 884, 930, 988
BtsI	GCAGTG	1 cut(s)	152
BtsIMutI	CAGTG	4 cut(s)	152, 223, 742, 1215
Cac8I	GCNNGC	1 cut(s)	549
CaiI	CAGNNNCTG	2 cut(s)	458, 467
CfoI	GCGC	2 cut(s)	499, 1188
Cfr13I	GGNCC	5 cut(s)	37, 38, 168, 713, 955
CseI	GACGC	2 cut(s)	553, 710
Csp6I	GTAC	4 cut(s)	176, 226, 859, 930
CviQI	GTAC	4 cut(s)	176, 226, 859, 930
DdeI	CTNAG	4 cut(s)	88, 222, 999, 1005
DpnI	GATC	3 cut(s)	872, 1046, 1052
DpnII	GATC	3 cut(s)	870, 1044, 1050
Eam1104I	CTCTTC	2 cut(s)	657, 1281
EarI	CTCTTC	2 cut(s)	657, 1281
Eco130I	CCWWGG	5 cut(s)	419, 581, 725, 902, 1097
Eco24I	GRGCYC	3 cut(s)	41, 79, 399
Eco32I	GATATC	1 cut(s)	1066
Eco47I	GGWCC	1 cut(s)	168
Eco81I	CCTNAGG	1 cut(s)	88
EcoO109I	RGGNCCY	3 cut(s)	37, 38, 168
EcoRV	GATATC	1 cut(s)	1066
EcoT14I	CCWWGG	5 cut(s)	419, 581, 725, 902, 1097
EcoT38I	GRGCYC	3 cut(s)	41, 79, 399
ErhI	CCWWGG	5 cut(s)	419, 581, 725, 902, 1097
FalI	AAGNNNNNCTT	4 cut(s)	799, 831, 1260, 1292
FaqI	GGGAC	3 cut(s)	125, 469, 556
Fnu4HI	GCNGC	4 cut(s)	647, 801, 996, 1125
FokI	GGATG	7 cut(s)	314, 661, 742, 855, 891, 937, 995
FriOI	GRGCYC	3 cut(s)	41, 79, 399
Fsp4HI	GCNGC	4 cut(s)	647, 801, 996, 1125
FspAI	RTGCGCAY	1 cut(s)	498
FspBI	CTAG	1 cut(s)	156
FspI	TGCGCA	1 cut(s)	498
GlaI	GCGC	2 cut(s)	498, 1187
GluI	GCNGC	4 cut(s)	647, 801, 996, 1125
HaeII	RGCGCY	1 cut(s)	1189
HaeIII	GGCC	6 cut(s)	39, 486, 551, 714, 847, 956
HapII	CCGG	1 cut(s)	281
HgaI	GACGC	2 cut(s)	553, 710
HhaI	GCGC	2 cut(s)	499, 1188
Hin6I	GCGC	2 cut(s)	497, 1186
HinP1I	GCGC	2 cut(s)	497, 1186
HinfI	GANTC	5 cut(s)	93, 311, 671, 1102, 1271
HpaII	CCGG	1 cut(s)	281
HphI	GGTGA	1 cut(s)	201
Hpy166II	GTNNAC	3 cut(s)	757, 859, 1222
Hpy188I	TCNGA	7 cut(s)	165, 244, 657, 779, 1008, 1164, 1281
Hpy188III	TCNNGA	3 cut(s)	90, 513, 1048
Hpy8I	GTNNAC	3 cut(s)	757, 859, 1222
HpyAV	CCTTC	1 cut(s)	326
HpyCH4III	ACNGT	3 cut(s)	218, 1021, 1210
HpyCH4V	TGCA	5 cut(s)	200, 389, 461, 611, 1286
HpyF10VI	GCNNNNNNNGC	2 cut(s)	601, 1001
HpyF3I	CTNAG	4 cut(s)	88, 222, 999, 1005
HspAI	GCGC	2 cut(s)	497, 1186
Kzo9I	GATC	3 cut(s)	870, 1044, 1050
LmnI	GCTCC	1 cut(s)	74
Lsp1109I	GCAGC	4 cut(s)	658, 787, 982, 1136
LweI	GCATC	3 cut(s)	613, 888, 1293
MaeI	CTAG	1 cut(s)	156
MaeIII	GTNAC	3 cut(s)	289, 463, 1028
MalI	GATC	3 cut(s)	872, 1046, 1052
MboI	GATC	3 cut(s)	870, 1044, 1050
MboII	GAAGA	9 cut(s)	198, 419, 542, 644, 674, 781, 1207, 1268, 1280
MfeI	CAATTG	2 cut(s)	183, 390
MflI	RGATCY	1 cut(s)	1050
MhlI	GDGCHC	3 cut(s)	41, 79, 399
MlyI	GAGTC	1 cut(s)	1265
MmeI	TCCRAC	1 cut(s)	52
MroXI	GAANNNNTTC	1 cut(s)	773
MseI	TTAA	3 cut(s)	591, 792, 1011
MslI	CAYNNNNRTG	1 cut(s)	492
MspI	CCGG	1 cut(s)	281
MspR9I	CCNGG	1 cut(s)	281
MunI	CAATTG	2 cut(s)	183, 390
Mva1269I	GAATGC	2 cut(s)	997, 1286
MwoI	GCNNNNNNNGC	2 cut(s)	601, 1001
NciI	CCSGG	1 cut(s)	281
NcoI	CCATGG	3 cut(s)	419, 581, 902
NdeII	GATC	3 cut(s)	870, 1044, 1050
NlaIV	GGNNCC	4 cut(s)	39, 40, 76, 957
NmuCI	GTSAC	1 cut(s)	1028
NsbI	TGCGCA	1 cut(s)	498
NspI	RCATGY	1 cut(s)	625
NspV	TTCGAA	1 cut(s)	58
PciI	ACATGT	1 cut(s)	621
PctI	GAATGC	2 cut(s)	997, 1286
PdmI	GAANNNNTTC	1 cut(s)	773
PfeI	GAWTC	4 cut(s)	93, 311, 671, 1102
PfoI	TCCNGGA	1 cut(s)	279
PkrI	GCNGC	4 cut(s)	648, 802, 997, 1126
PleI	GAGTC	1 cut(s)	1265
PpsI	GAGTC	1 cut(s)	1265
PpuMI	RGGWCCY	1 cut(s)	168
PscI	ACATGT	1 cut(s)	621
Psp5II	RGGWCCY	1 cut(s)	168
PspN4I	GGNNCC	4 cut(s)	39, 40, 76, 957
PspOMI	GGGCCC	1 cut(s)	37
PspPI	GGNCC	5 cut(s)	37, 38, 168, 713, 955
PspPPI	RGGWCCY	1 cut(s)	168
PstI	CTGCAG	1 cut(s)	463
PstNI	CAGNNNCTG	2 cut(s)	458, 467
PsuI	RGATCY	1 cut(s)	1050
RsaI	GTAC	4 cut(s)	177, 227, 860, 931
RsaNI	GTAC	4 cut(s)	176, 226, 859, 930
RseI	CAYNNNNRTG	1 cut(s)	492
SaqAI	TTAA	3 cut(s)	591, 792, 1011
SatI	GCNGC	4 cut(s)	647, 801, 996, 1125
Sau3AI	GATC	3 cut(s)	870, 1044, 1050
Sau96I	GGNCC	5 cut(s)	37, 38, 168, 713, 955
SchI	GAGTC	1 cut(s)	1265
ScrFI	CCNGG	1 cut(s)	281
SduI	GDGCHC	3 cut(s)	41, 79, 399
SetI	ASST	8 cut(s)	173, 330, 590, 643, 742, 970, 1112, 1129
SfaNI	GCATC	3 cut(s)	613, 888, 1293
SfcI	CTRYAG	1 cut(s)	459
SfuI	TTCGAA	1 cut(s)	58
SinI	GGWCC	1 cut(s)	168
SmiMI	CAYNNNNRTG	1 cut(s)	492
SmlI	CTYRAG	1 cut(s)	511
SmoI	CTYRAG	1 cut(s)	511
SsiI	CCGC	1 cut(s)	980
SspMI	CTAG	1 cut(s)	156
StyD4I	CCNGG	1 cut(s)	279
StyI	CCWWGG	5 cut(s)	419, 581, 725, 902, 1097
TaaI	ACNGT	3 cut(s)	218, 1021, 1210
TaqI	TCGA	2 cut(s)	58, 1047
TatI	WGTACW	4 cut(s)	175, 225, 858, 929
TfiI	GAWTC	4 cut(s)	93, 311, 671, 1102
Tru1I	TTAA	3 cut(s)	591, 792, 1011
Tru9I	TTAA	3 cut(s)	591, 792, 1011
TscAI	CASTG	4 cut(s)	152, 223, 749, 1215
TseFI	GTSAC	1 cut(s)	1028
TseI	GCWGC	4 cut(s)	646, 800, 995, 1124
Tsp45I	GTSAC	1 cut(s)	1028
TspDTI	ATGAA	4 cut(s)	663, 935, 1013, 1208
TspGWI	ACGGA	1 cut(s)	1029
TspRI	CASTG	4 cut(s)	152, 223, 749, 1215
VpaK11BI	GGWCC	1 cut(s)	168
XceI	RCATGY	1 cut(s)	625
XcmI	CCANNNNNNNNNTGG	2 cut(s)	579, 723
XmnI	GAANNNNTTC	1 cut(s)	773
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.