Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0016050

Physical Location & Seq

Genomic Coordinates Reverse (-)

815329 .. 819297

Gene Structure 3969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG014600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGAGTTCTTATTCTGTTTCTGGTTTTGAGTTTCAGGGCCCCTATCATAAGCCAATTCGAAGCCAGAGAGTTGGAGCCCATTTTCCTTCAGGAATCTGCTTTTTGAAATGGGACAACCATCTCCAAAAGGGTATCAAACATCAGCAGTGTTCTCCTAGAAATCGGAGGACCTTTGTACAAGCAATTGCCATTCCAGTTGCACCATCTTCACCAGACAGTGCTGAGTACAGAAAACAATTATCTGAAAGTTATGGTTTCAAACAAATTGGAGAACCACTCCCGGACAATGTTACGCTAAAGGATGTCATTGATTCCCTTCCAAAAAAGGTGTTTGAGATTGATGATGTGAAAGCATGGAAGTCAGTTCTAATATCTGCCACTTCCTATGCAATTGGGCTCTTTTTGATTTCAAAAGCCCCATGGTATCTTCTCCCTGTTGCGTGGGCATGGACAGGGACTGCAGTTACTGGGTTTTTTGTTATAGGCCATGATTGTGCGCACAAATCATTCTCAAGAAACAAATTAGTGGAAGACATTGTTGGGACGCTGGCCTTTTTGCCATTGATATATCCATACGAACCATGGAGGTTTAAGCATGATAGGCATCATGCAAAAACGAACATGTTGGTTGAAGATACAGCTTGGCAACCTATTCCGAAAGAAGAGTTTGATTCATCCCCTTTGTTGCGAAAGGCAATTATTTATGGATATGGCCCATTGCGTCCTTGGATGTCAATAGCTCACTGGTGGCTCGTCCACTTCAATTTGAAGAAGTTCAGAACAAGTGAAGTTAAAAGGGCTGCTATAAGTTTGGCTTGTGTTTTTGCGTTTATGGGGATTGGATGGCCTCTAATTGTGTACAAGACGGGGATCATGGGATGGGTAAAGTTTTGGTTGATGCCATGGTTGGGCTACCACTTTTGGATGAGTACATTCACAATGGTTCATCATACGGCCCCTCATATACCTTTCAAATCTGCGGATGAGTGGAATGCTGCTCAGGCTCAGATTAACGGAACAGTTCATTGTGACTACCCCTCGTGGATCGAGATCCTCTGCCATGATATCAATGTCCATATACCCCATCATATATCTCCAAGGATTCCAAGCTATAACTTACGAGCAGCTCATAAGTCTATCCAAGAAAACTGGGGAAAGTATCTGAACGAGGCTACATGGAATTGGCGCTTGATGAAGACGATAATGACAGTGTGCCATGTTTACAACAAGGAGGAGAACTACATTCCATTTGACGAACTTGCCCCAGAAGACTCTCTTCCGATTGCATTCCTCAAAAAAGTGATGCCTGATTCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009642 GO:0009644 GO:0009892 GO:0009941 GO:0009987 GO:0010109 GO:0010205 GO:0016053 GO:0019222 GO:0019752 GO:0019904 GO:0031323 GO:0031324 GO:0031967 GO:0031975 GO:0032787 GO:0042548 GO:0043155 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043467 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0072330 GO:1901576 GO:1905156

KEGG Pathways

Metabolic & Signaling

ko02020 map02020

Pfam Domains

Protein Families

FA_desaturase

Protein Analysis

439

Amino Acids

50.65

Weight (kDa)

9.02

Isoelectric Point (pI)

46.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_desaturase	PF00487	140 - 388	9e-33	Fatty acid desaturase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016050)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30950
fragaria_vesca	FvH4_1g01030
malus_domestica	MD15G1152700.v1.1
prunus_persica	Prupe.7G261900_v2.0.a1
pyrus_communis	pycom15g13730
rosa_chinensis	RchiOBHm_Chr2g0085771
rosa_laevigata	RLG00000015718
rosa_multiflora	Rmu_sc0009759.1_g000002
rosa_roxburghii	Rroxscaffold_2G00155050
rosa_rugosa	Rorug01G0463000
rosa_samantha	Rh2AG012300 Rh2BG012900 Rh2CG013600 Rh2DG014600
rosa_wichuraiana	Rw2G001090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	498
AciI	CCGC	1 cut(s)	980
AclWI	GGATC	3 cut(s)	878, 1045, 1052
AcuI	CTGAAG	1 cut(s)	72
AfaI	GTAC	4 cut(s)	177, 227, 860, 931
AfiI	CCNNNNNNNGG	1 cut(s)	908
AflIII	ACRYGT	1 cut(s)	621
AgsI	TTSAA	7 cut(s)	106, 259, 411, 632, 763, 769, 973
AjuI	GAANNNNNNNTTGG	2 cut(s)	522, 554
AluBI	AGCT	4 cut(s)	641, 740, 1110, 1127
AluI	AGCT	4 cut(s)	641, 740, 1110, 1127
AlwI	GGATC	3 cut(s)	878, 1045, 1052
AlwNI	CAGNNNCTG	2 cut(s)	458, 467
AoxI	GGCC	6 cut(s)	37, 484, 549, 712, 845, 954
ApaI	GGGCCC	1 cut(s)	41
ApeKI	GCWGC	3 cut(s)	800, 995, 1124
Asp700I	GAANNNNTTC	1 cut(s)	773
AspLEI	GCGC	2 cut(s)	499, 1188
AspS9I	GGNCC	5 cut(s)	37, 38, 168, 713, 955
AsuC2I	CCSGG	1 cut(s)	281
AsuHPI	GGTGA	1 cut(s)	201
AsuII	TTCGAA	1 cut(s)	58
AvaII	GGWCC	1 cut(s)	168
BaeGI	GKGCMC	1 cut(s)	41
BanII	GRGCYC	3 cut(s)	41, 79, 399
BauI	CACGAG	1 cut(s)	1039
BbsI	GAAGAC	3 cut(s)	537, 1202, 1275
BbvI	GCAGC	3 cut(s)	787, 982, 1136
BccI	CCATC	5 cut(s)	126, 211, 837, 873, 1092
BceAI	ACGGC	1 cut(s)	969
BcnI	CCSGG	1 cut(s)	281
BfaI	CTAG	1 cut(s)	156
BfmI	CTRYAG	1 cut(s)	459
BfoI	RGCGCY	1 cut(s)	1189
BisI	GCNGC	3 cut(s)	801, 996, 1125
BlsI	GCNGC	3 cut(s)	802, 997, 1126
Bme1390I	CCNGG	1 cut(s)	281
Bme18I	GGWCC	1 cut(s)	168
BmgT120I	GGNCC	5 cut(s)	37, 38, 168, 713, 955
BmiI	GGNNCC	4 cut(s)	39, 40, 76, 957
BmrFI	CCNGG	1 cut(s)	281
BmrI	ACTGGG	2 cut(s)	477, 1159
BmsI	GCATC	3 cut(s)	613, 888, 1293
BmuI	ACTGGG	2 cut(s)	477, 1159
BpiI	GAAGAC	3 cut(s)	537, 1202, 1275
BplI	GAGNNNNNCTC	2 cut(s)	261, 293
Bpu10I	CCTNAGC	1 cut(s)	999
Bpu14I	TTCGAA	1 cut(s)	58
BpuEI	CTTGAG	1 cut(s)	496
BpuMI	CCSGG	1 cut(s)	281
BsaBI	GATNNNNATC	2 cut(s)	603, 1049
BsaJI	CCNNGG	5 cut(s)	419, 581, 725, 902, 1097
Bsc4I	CCNNNNNNNGG	1 cut(s)	908
Bse1I	ACTGG	4 cut(s)	194, 472, 749, 1154
Bse3DI	GCAATG	1 cut(s)	716
Bse8I	GATNNNNATC	2 cut(s)	603, 1049
BseDI	CCNNGG	5 cut(s)	419, 581, 725, 902, 1097
BseGI	GGATG	7 cut(s)	307, 674, 735, 848, 884, 930, 988
BseJI	GATNNNNATC	2 cut(s)	603, 1049
BseLI	CCNNNNNNNGG	1 cut(s)	908
BseMI	GCAATG	1 cut(s)	716
BseMII	CTCAG	3 cut(s)	213, 1013, 1019
BseNI	ACTGG	4 cut(s)	194, 472, 749, 1154
BseRI	GAGGAG	1 cut(s)	1247
BseSI	GKGCMC	1 cut(s)	41
BseXI	GCAGC	3 cut(s)	787, 982, 1136
BshFI	GGCC	6 cut(s)	39, 486, 551, 714, 847, 956
BsiSI	CCGG	1 cut(s)	281
BslFI	GGGAC	3 cut(s)	125, 469, 556
BslI	CCNNNNNNNGG	1 cut(s)	908
BsmFI	GGGAC	3 cut(s)	125, 469, 556
BsmI	GAATGC	2 cut(s)	997, 1286
BsnI	GGCC	6 cut(s)	39, 486, 551, 714, 847, 956
Bsp119I	TTCGAA	1 cut(s)	58
Bsp120I	GGGCCC	1 cut(s)	37
Bsp1286I	GDGCHC	3 cut(s)	41, 79, 399
Bsp1407I	TGTACA	2 cut(s)	175, 858
Bsp143I	GATC	3 cut(s)	870, 1044, 1050
Bsp19I	CCATGG	3 cut(s)	419, 581, 902
BspACI	CCGC	1 cut(s)	980
BspANI	GGCC	6 cut(s)	39, 486, 551, 714, 847, 956
BspCNI	CTCAG	3 cut(s)	214, 1012, 1018
BspLI	GGNNCC	4 cut(s)	39, 40, 76, 957
BspMAI	CTGCAG	1 cut(s)	463
BspPI	GGATC	3 cut(s)	878, 1045, 1052
BspT104I	TTCGAA	1 cut(s)	58
BsrDI	GCAATG	1 cut(s)	716
BsrGI	TGTACA	2 cut(s)	175, 858
BsrI	ACTGG	4 cut(s)	194, 472, 749, 1154
BssECI	CCNNGG	5 cut(s)	419, 581, 725, 902, 1097
BssMI	GATC	3 cut(s)	870, 1044, 1050
BssSI	CACGAG	1 cut(s)	1039
BssT1I	CCWWGG	5 cut(s)	419, 581, 725, 902, 1097
Bst2BI	CACGAG	1 cut(s)	1039
Bst4CI	ACNGT	3 cut(s)	218, 1021, 1210
Bst6I	CTCTTC	2 cut(s)	657, 1281
BstAUI	TGTACA	2 cut(s)	175, 858
BstBI	TTCGAA	1 cut(s)	58
BstC8I	GCNNGC	1 cut(s)	549
BstDEI	CTNAG	3 cut(s)	222, 999, 1005
BstDSI	CCRYGG	3 cut(s)	419, 581, 902
BstF5I	GGATG	7 cut(s)	307, 674, 735, 848, 884, 930, 988
BstH2I	RGCGCY	1 cut(s)	1189
BstHHI	GCGC	2 cut(s)	499, 1188
BstKTI	GATC	3 cut(s)	873, 1047, 1053
BstMBI	GATC	3 cut(s)	870, 1044, 1050
BstMWI	GCNNNNNNNGC	2 cut(s)	601, 1001
BstNSI	RCATGY	1 cut(s)	625
BstSCI	CCNGG	1 cut(s)	279
BstSFI	CTRYAG	1 cut(s)	459
BstSLI	GKGCMC	1 cut(s)	41
BstV1I	GCAGC	3 cut(s)	787, 982, 1136
BstV2I	GAAGAC	3 cut(s)	537, 1202, 1275
BstX2I	RGATCY	1 cut(s)	1050
BstXI	CCANNNNNNTGG	1 cut(s)	71
BstYI	RGATCY	1 cut(s)	1050
BsuRI	GGCC	6 cut(s)	39, 486, 551, 714, 847, 956
BtgI	CCRYGG	3 cut(s)	419, 581, 902
BtsCI	GGATG	7 cut(s)	307, 674, 735, 848, 884, 930, 988
BtsI	GCAGTG	1 cut(s)	152
BtsIMutI	CAGTG	4 cut(s)	152, 223, 742, 1215
Cac8I	GCNNGC	1 cut(s)	549
CaiI	CAGNNNCTG	2 cut(s)	458, 467
CfoI	GCGC	2 cut(s)	499, 1188
Cfr13I	GGNCC	5 cut(s)	37, 38, 168, 713, 955
CseI	GACGC	2 cut(s)	553, 710
Csp6I	GTAC	4 cut(s)	176, 226, 859, 930
CviQI	GTAC	4 cut(s)	176, 226, 859, 930
DdeI	CTNAG	3 cut(s)	222, 999, 1005
DpnI	GATC	3 cut(s)	872, 1046, 1052
DpnII	GATC	3 cut(s)	870, 1044, 1050
Eam1104I	CTCTTC	2 cut(s)	657, 1281
EarI	CTCTTC	2 cut(s)	657, 1281
Eco130I	CCWWGG	5 cut(s)	419, 581, 725, 902, 1097
Eco24I	GRGCYC	3 cut(s)	41, 79, 399
Eco32I	GATATC	1 cut(s)	1066
Eco47I	GGWCC	1 cut(s)	168
Eco57I	CTGAAG	1 cut(s)	72
EcoO109I	RGGNCCY	3 cut(s)	37, 38, 168
EcoRV	GATATC	1 cut(s)	1066
EcoT14I	CCWWGG	5 cut(s)	419, 581, 725, 902, 1097
EcoT38I	GRGCYC	3 cut(s)	41, 79, 399
ErhI	CCWWGG	5 cut(s)	419, 581, 725, 902, 1097
FalI	AAGNNNNNCTT	4 cut(s)	799, 831, 1260, 1292
FaqI	GGGAC	3 cut(s)	125, 469, 556
Fnu4HI	GCNGC	3 cut(s)	801, 996, 1125
FokI	GGATG	7 cut(s)	314, 661, 742, 855, 891, 937, 995
FriOI	GRGCYC	3 cut(s)	41, 79, 399
Fsp4HI	GCNGC	3 cut(s)	801, 996, 1125
FspAI	RTGCGCAY	1 cut(s)	498
FspBI	CTAG	1 cut(s)	156
FspI	TGCGCA	1 cut(s)	498
GlaI	GCGC	2 cut(s)	498, 1187
GluI	GCNGC	3 cut(s)	801, 996, 1125
HaeII	RGCGCY	1 cut(s)	1189
HaeIII	GGCC	6 cut(s)	39, 486, 551, 714, 847, 956
HapII	CCGG	1 cut(s)	281
HgaI	GACGC	2 cut(s)	553, 710
HhaI	GCGC	2 cut(s)	499, 1188
Hin6I	GCGC	2 cut(s)	497, 1186
HinP1I	GCGC	2 cut(s)	497, 1186
HinfI	GANTC	6 cut(s)	93, 311, 671, 1102, 1271, 1310
HpaII	CCGG	1 cut(s)	281
HphI	GGTGA	1 cut(s)	201
Hpy166II	GTNNAC	3 cut(s)	757, 859, 1222
Hpy188I	TCNGA	7 cut(s)	165, 244, 657, 779, 1008, 1164, 1281
Hpy188III	TCNNGA	3 cut(s)	90, 513, 1048
Hpy8I	GTNNAC	3 cut(s)	757, 859, 1222
HpyAV	CCTTC	2 cut(s)	96, 326
HpyCH4III	ACNGT	3 cut(s)	218, 1021, 1210
HpyCH4V	TGCA	5 cut(s)	200, 389, 461, 611, 1286
HpyF10VI	GCNNNNNNNGC	2 cut(s)	601, 1001
HpyF3I	CTNAG	3 cut(s)	222, 999, 1005
HspAI	GCGC	2 cut(s)	497, 1186
Kzo9I	GATC	3 cut(s)	870, 1044, 1050
LmnI	GCTCC	1 cut(s)	74
Lsp1109I	GCAGC	3 cut(s)	787, 982, 1136
LweI	GCATC	3 cut(s)	613, 888, 1293
MaeI	CTAG	1 cut(s)	156
MaeIII	GTNAC	3 cut(s)	289, 463, 1028
MalI	GATC	3 cut(s)	872, 1046, 1052
MboI	GATC	3 cut(s)	870, 1044, 1050
MboII	GAAGA	9 cut(s)	198, 419, 542, 644, 674, 781, 1207, 1268, 1280
MfeI	CAATTG	2 cut(s)	183, 390
MflI	RGATCY	1 cut(s)	1050
MhlI	GDGCHC	3 cut(s)	41, 79, 399
MlyI	GAGTC	1 cut(s)	1265
MmeI	TCCRAC	1 cut(s)	52
MnlI	CCTC	9 cut(s)	159, 579, 858, 969, 1048, 1064, 1162, 1225, 1301
MroXI	GAANNNNTTC	1 cut(s)	773
MseI	TTAA	3 cut(s)	591, 792, 1011
MslI	CAYNNNNRTG	1 cut(s)	492
MspI	CCGG	1 cut(s)	281
MspR9I	CCNGG	1 cut(s)	281
MunI	CAATTG	2 cut(s)	183, 390
Mva1269I	GAATGC	2 cut(s)	997, 1286
MwoI	GCNNNNNNNGC	2 cut(s)	601, 1001
NciI	CCSGG	1 cut(s)	281
NcoI	CCATGG	3 cut(s)	419, 581, 902
NdeII	GATC	3 cut(s)	870, 1044, 1050
NlaIV	GGNNCC	4 cut(s)	39, 40, 76, 957
NmuCI	GTSAC	1 cut(s)	1028
NsbI	TGCGCA	1 cut(s)	498
NspI	RCATGY	1 cut(s)	625
NspV	TTCGAA	1 cut(s)	58
PciI	ACATGT	1 cut(s)	621
PctI	GAATGC	2 cut(s)	997, 1286
PdmI	GAANNNNTTC	1 cut(s)	773
PfeI	GAWTC	5 cut(s)	93, 311, 671, 1102, 1310
PfoI	TCCNGGA	1 cut(s)	279
PkrI	GCNGC	3 cut(s)	802, 997, 1126
PleI	GAGTC	1 cut(s)	1265
PpsI	GAGTC	1 cut(s)	1265
PpuMI	RGGWCCY	1 cut(s)	168
PscI	ACATGT	1 cut(s)	621
Psp5II	RGGWCCY	1 cut(s)	168
PspN4I	GGNNCC	4 cut(s)	39, 40, 76, 957
PspOMI	GGGCCC	1 cut(s)	37
PspPI	GGNCC	5 cut(s)	37, 38, 168, 713, 955
PspPPI	RGGWCCY	1 cut(s)	168
PstI	CTGCAG	1 cut(s)	463
PstNI	CAGNNNCTG	2 cut(s)	458, 467
PsuI	RGATCY	1 cut(s)	1050
RsaI	GTAC	4 cut(s)	177, 227, 860, 931
RsaNI	GTAC	4 cut(s)	176, 226, 859, 930
RseI	CAYNNNNRTG	1 cut(s)	492
SaqAI	TTAA	3 cut(s)	591, 792, 1011
SatI	GCNGC	3 cut(s)	801, 996, 1125
Sau3AI	GATC	3 cut(s)	870, 1044, 1050
Sau96I	GGNCC	5 cut(s)	37, 38, 168, 713, 955
SchI	GAGTC	1 cut(s)	1265
ScrFI	CCNGG	1 cut(s)	281
SduI	GDGCHC	3 cut(s)	41, 79, 399
SetI	ASST	9 cut(s)	173, 330, 590, 643, 652, 742, 970, 1112, 1129
SfaNI	GCATC	3 cut(s)	613, 888, 1293
SfcI	CTRYAG	1 cut(s)	459
SfuI	TTCGAA	1 cut(s)	58
SinI	GGWCC	1 cut(s)	168
SmiMI	CAYNNNNRTG	1 cut(s)	492
SmlI	CTYRAG	1 cut(s)	511
SmoI	CTYRAG	1 cut(s)	511
SsiI	CCGC	1 cut(s)	980
SspMI	CTAG	1 cut(s)	156
StyD4I	CCNGG	1 cut(s)	279
StyI	CCWWGG	5 cut(s)	419, 581, 725, 902, 1097
TaaI	ACNGT	3 cut(s)	218, 1021, 1210
TaqI	TCGA	2 cut(s)	58, 1047
TatI	WGTACW	4 cut(s)	175, 225, 858, 929
TfiI	GAWTC	5 cut(s)	93, 311, 671, 1102, 1310
Tru1I	TTAA	3 cut(s)	591, 792, 1011
Tru9I	TTAA	3 cut(s)	591, 792, 1011
TscAI	CASTG	4 cut(s)	152, 223, 749, 1215
TseFI	GTSAC	1 cut(s)	1028
TseI	GCWGC	3 cut(s)	800, 995, 1124
Tsp45I	GTSAC	1 cut(s)	1028
TspDTI	ATGAA	4 cut(s)	663, 935, 1013, 1208
TspGWI	ACGGA	1 cut(s)	1029
TspRI	CASTG	4 cut(s)	152, 223, 749, 1215
VpaK11BI	GGWCC	1 cut(s)	168
XceI	RCATGY	1 cut(s)	625
XcmI	CCANNNNNNNNNTGG	2 cut(s)	579, 723
XmnI	GAANNNNTTC	1 cut(s)	773
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.