FvH4_1g02940

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0013580
Physical Location & Seq
Reverse (-)
1659170 .. 1659879
710 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g02940.t1

Sequence Viewer

Length: 495 bp
ATGGCGAAAGCCATGAATGTTTTGGTTGCTGTTATAGCATTGGCAGCAATATTCTTCCATAGCACAGAAGCTGAATACGAGCACGAATTGGTCTGGGCGATTCCTTCTGGCGGAGCCGCCGAGTATGCAACCTGGGCGGCGGCGCATCCTTTTGTACTTAATGGCGGTGCTGATTACGATAGTTTAACATTTGATTTTGCAACAGGAGAACAAGACCTGGCTGAAGTGACAAAGGAGGATTTCGACAGTTGTACCACCACAAATCCGATAGAGAAATTTTCAGAGGCAGTTAATCTTGCGCCTGCTGTTCCCGGCACATATTATTACACCTGCACATTCGCCGGCCATTGCACCAAAGGGCAAAAGATCGCGGTTACCTGGACCAATACTACGGCAGCAGCGGCACCTGCTCCGTGTCCAATGTCATCAGCAACCACTTACTCCGCTCTGCCACTTAAATTTCTCTCTAAAAATGTTAACAAGGGCAACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

165

Amino Acids

17.43

Weight (kDa)

4.77

Isoelectric Point (pI)

36.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 37 - 121 9.3e-13 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 338, 415
Acc36I ACCTGC 2 cut(s) 338, 415
AccB1I GGYRCC 1 cut(s) 403
AccBSI CCGCTC 1 cut(s) 446
AccII CGCG 1 cut(s) 371
AciI CCGC 8 cut(s) 111, 117, 137, 140, 165, 371, 401, 444
AcoI YGGCCR 1 cut(s) 343
AcsI RAATTY 2 cut(s) 275, 458
AcuI CTGAAG 1 cut(s) 243
AfaI GTAC 2 cut(s) 156, 253
AfiI CCNNNNNNNGG 1 cut(s) 110
AjnI CCWGG 3 cut(s) 131, 216, 377
AluBI AGCT 1 cut(s) 71
AluI AGCT 1 cut(s) 71
Alw21I GWGCWC 1 cut(s) 84
AlwNI CAGNNNCTG 1 cut(s) 71
AoxI GGCC 1 cut(s) 343
ApeKI GCWGC 3 cut(s) 44, 395, 398
ApoI RAATTY 2 cut(s) 275, 458
AspLEI GCGC 2 cut(s) 145, 301
AspS9I GGNCC 1 cut(s) 381
AsuC2I CCSGG 1 cut(s) 312
AvaII GGWCC 1 cut(s) 381
BaeI ACNNNNGTAYC 2 cut(s) 235, 268
BanI GGYRCC 1 cut(s) 403
Bbv12I GWGCWC 1 cut(s) 84
BbvI GCAGC 3 cut(s) 56, 407, 410
BceAI ACGGC 1 cut(s) 408
BciT130I CCWGG 3 cut(s) 133, 218, 379
BcnI CCSGG 1 cut(s) 312
BfuAI ACCTGC 2 cut(s) 338, 415
BisI GCNGC 7 cut(s) 45, 117, 138, 141, 396, 399, 402
BlsI GCNGC 7 cut(s) 46, 118, 139, 142, 397, 400, 403
Bme1390I CCNGG 4 cut(s) 133, 218, 312, 379
Bme18I GGWCC 1 cut(s) 381
BmgT120I GGNCC 1 cut(s) 381
BmiI GGNNCC 2 cut(s) 115, 405
BmrFI CCNGG 4 cut(s) 133, 218, 312, 379
BmsI GCATC 1 cut(s) 154
BpuMI CCSGG 1 cut(s) 312
BsaJI CCNNGG 1 cut(s) 132
Bsc4I CCNNNNNNNGG 1 cut(s) 110
Bse118I RCCGGY 1 cut(s) 341
Bse3DI GCAATG 1 cut(s) 346
BseBI CCWGG 3 cut(s) 133, 218, 379
BseDI CCNNGG 1 cut(s) 132
BseGI GGATG 1 cut(s) 145
BseLI CCNNNNNNNGG 1 cut(s) 110
BseMI GCAATG 1 cut(s) 346
BseXI GCAGC 3 cut(s) 56, 407, 410
BsgI GTGCAG 1 cut(s) 316
Bsh1236I CGCG 1 cut(s) 371
BshFI GGCC 1 cut(s) 345
BshNI GGYRCC 1 cut(s) 403
BsiHKAI GWGCWC 1 cut(s) 84
BsiSI CCGG 2 cut(s) 312, 342
BslI CCNNNNNNNGG 1 cut(s) 110
BsnI GGCC 1 cut(s) 345
Bsp1286I GDGCHC 1 cut(s) 84
Bsp143I GATC 1 cut(s) 366
BspACI CCGC 8 cut(s) 111, 117, 137, 140, 165, 371, 401, 444
BspANI GGCC 1 cut(s) 345
BspFNI CGCG 1 cut(s) 371
BspLI GGNNCC 2 cut(s) 115, 405
BspMI ACCTGC 2 cut(s) 338, 415
BspT107I GGYRCC 1 cut(s) 403
BsrBI CCGCTC 1 cut(s) 446
BsrDI GCAATG 1 cut(s) 346
BsrFI RCCGGY 1 cut(s) 341
BssAI RCCGGY 1 cut(s) 341
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 1 cut(s) 366
Bst2UI CCWGG 3 cut(s) 133, 218, 379
Bst4CI ACNGT 1 cut(s) 248
BstC8I GCNNGC 2 cut(s) 303, 343
BstEII GGTNACC 1 cut(s) 373
BstF5I GGATG 1 cut(s) 145
BstFNI CGCG 1 cut(s) 371
BstHHI GCGC 2 cut(s) 145, 301
BstKTI GATC 1 cut(s) 369
BstMBI GATC 1 cut(s) 366
BstMWI GCNNNNNNNGC 6 cut(s) 35, 44, 125, 134, 401, 407
BstNI CCWGG 3 cut(s) 133, 218, 379
BstPI GGTNACC 1 cut(s) 373
BstSCI CCNGG 4 cut(s) 131, 216, 310, 377
BstUI CGCG 1 cut(s) 371
BstV1I GCAGC 3 cut(s) 56, 407, 410
BsuRI GGCC 1 cut(s) 345
BtsCI GGATG 1 cut(s) 145
BveI ACCTGC 2 cut(s) 338, 415
Cac8I GCNNGC 2 cut(s) 303, 343
CaiI CAGNNNCTG 1 cut(s) 71
CfoI GCGC 2 cut(s) 145, 301
Cfr10I RCCGGY 1 cut(s) 341
Cfr13I GGNCC 1 cut(s) 381
Csp6I GTAC 2 cut(s) 155, 252
CviAII CATG 1 cut(s) 13
CviJI RGCY 5 cut(s) 11, 71, 116, 221, 345
CviKI_1 RGCY 5 cut(s) 11, 71, 116, 221, 345
CviQI GTAC 2 cut(s) 155, 252
DpnI GATC 1 cut(s) 368
DpnII GATC 1 cut(s) 366
EaeI YGGCCR 1 cut(s) 343
EciI GGCGGA 1 cut(s) 126
Eco47I GGWCC 1 cut(s) 381
Eco57I CTGAAG 1 cut(s) 243
Eco91I GGTNACC 1 cut(s) 373
EcoO65I GGTNACC 1 cut(s) 373
EcoRII CCWGG 3 cut(s) 131, 216, 377
FaeI CATG 1 cut(s) 16
FaiI YATR 5 cut(s) 14, 35, 60, 126, 319
FatI CATG 1 cut(s) 12
Fnu4HI GCNGC 7 cut(s) 45, 117, 138, 141, 396, 399, 402
FokI GGATG 1 cut(s) 132
Fsp4HI GCNGC 7 cut(s) 45, 117, 138, 141, 396, 399, 402
GlaI GCGC 2 cut(s) 144, 300
GluI GCNGC 7 cut(s) 45, 117, 138, 141, 396, 399, 402
HaeIII GGCC 1 cut(s) 345
HapII CCGG 2 cut(s) 312, 342
HhaI GCGC 2 cut(s) 145, 301
Hin1II CATG 1 cut(s) 16
Hin6I GCGC 2 cut(s) 143, 299
HinP1I GCGC 2 cut(s) 143, 299
HincII GTYRAC 1 cut(s) 478
HindII GTYRAC 1 cut(s) 478
HinfI GANTC 1 cut(s) 100
HpaI GTTAAC 1 cut(s) 478
HpaII CCGG 2 cut(s) 312, 342
Hpy166II GTNNAC 1 cut(s) 478
Hpy188I TCNGA 2 cut(s) 267, 283
Hpy8I GTNNAC 1 cut(s) 478
HpyAV CCTTC 1 cut(s) 114
HpyCH4III ACNGT 1 cut(s) 248
HpyCH4V TGCA 4 cut(s) 128, 200, 333, 351
HpyF10VI GCNNNNNNNGC 6 cut(s) 35, 44, 125, 134, 401, 407
Hsp92II CATG 1 cut(s) 16
HspAI GCGC 2 cut(s) 143, 299
KroI GCCGGC 1 cut(s) 341
KroNI GCCGGC 1 cut(s) 343
KspAI GTTAAC 1 cut(s) 478
Kzo9I GATC 1 cut(s) 366
LmnI GCTCC 2 cut(s) 113, 415
Lsp1109I GCAGC 3 cut(s) 56, 407, 410
LweI GCATC 1 cut(s) 154
MaeIII GTNAC 2 cut(s) 226, 373
MalI GATC 1 cut(s) 368
MbiI CCGCTC 1 cut(s) 446
MboI GATC 1 cut(s) 366
MboII GAAGA 1 cut(s) 46
MhlI GDGCHC 1 cut(s) 84
MluCI AATT 3 cut(s) 86, 275, 458
MnlI CCTC 2 cut(s) 229, 277
MroNI GCCGGC 1 cut(s) 341
MseI TTAA 5 cut(s) 159, 185, 291, 456, 477
MspA1I CMGCKG 1 cut(s) 401
MspI CCGG 2 cut(s) 312, 342
MspR9I CCNGG 4 cut(s) 133, 218, 312, 379
MvaI CCWGG 3 cut(s) 133, 218, 379
MvnI CGCG 1 cut(s) 371
MwoI GCNNNNNNNGC 6 cut(s) 35, 44, 125, 134, 401, 407
NaeI GCCGGC 1 cut(s) 343
NciI CCSGG 1 cut(s) 312
NdeII GATC 1 cut(s) 366
NgoMIV GCCGGC 1 cut(s) 341
NlaIII CATG 1 cut(s) 16
NlaIV GGNNCC 2 cut(s) 115, 405
NmeAIII GCCGAG 1 cut(s) 145
NmuCI GTSAC 1 cut(s) 226
PaqCI CACCTGC 2 cut(s) 338, 415
PdiI GCCGGC 1 cut(s) 343
PfeI GAWTC 1 cut(s) 100
PkrI GCNGC 7 cut(s) 46, 118, 139, 142, 397, 400, 403
Psp6I CCWGG 3 cut(s) 131, 216, 377
PspEI GGTNACC 1 cut(s) 373
PspGI CCWGG 3 cut(s) 131, 216, 377
PspN4I GGNNCC 2 cut(s) 115, 405
PspPI GGNCC 1 cut(s) 381
PstNI CAGNNNCTG 1 cut(s) 71
RsaI GTAC 2 cut(s) 156, 253
RsaNI GTAC 2 cut(s) 155, 252
SaqAI TTAA 5 cut(s) 159, 185, 291, 456, 477
SatI GCNGC 7 cut(s) 45, 117, 138, 141, 396, 399, 402
Sau3AI GATC 1 cut(s) 366
Sau96I GGNCC 1 cut(s) 381
ScrFI CCNGG 4 cut(s) 133, 218, 312, 379
SduI GDGCHC 1 cut(s) 84
SetI ASST 6 cut(s) 73, 134, 219, 332, 380, 409
SfaNI GCATC 1 cut(s) 154
SinI GGWCC 1 cut(s) 381
Sse9I AATT 3 cut(s) 86, 275, 458
SsiI CCGC 8 cut(s) 111, 117, 137, 140, 165, 371, 401, 444
SspI AATATT 1 cut(s) 51
StyD4I CCNGG 4 cut(s) 131, 216, 310, 377
TaaI ACNGT 1 cut(s) 248
TaqI TCGA 1 cut(s) 243
TasI AATT 3 cut(s) 86, 275, 458
TatI WGTACW 1 cut(s) 154
TauI GCSGC 4 cut(s) 119, 140, 143, 404
TfiI GAWTC 1 cut(s) 100
Tru1I TTAA 5 cut(s) 159, 185, 291, 456, 477
Tru9I TTAA 5 cut(s) 159, 185, 291, 456, 477
TseFI GTSAC 1 cut(s) 226
TseI GCWGC 3 cut(s) 44, 395, 398
Tsp45I GTSAC 1 cut(s) 226
TspDTI ATGAA 1 cut(s) 29
TspGWI ACGGA 1 cut(s) 402
VpaK11BI GGWCC 1 cut(s) 381
XapI RAATTY 2 cut(s) 275, 458
XcmI CCANNNNNNNNNTGG 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.