Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0013580

Physical Location & Seq

Genomic Coordinates Forward (+)

56864476 .. 56867227

Gene Structure 2752 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0480700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGAGTGCTATGGATTCTTCTTCTTCTTCTTCGTCTTGTTGCCCCTTCTGTAATCTCACAGTTCCATCCTCACAACTTGAACGGCATGCCAATAGTCACTTTGAGGTTGAAGATGAGCAACTGGCTATGGACTTGGAGTTTGCCCAGCAACTTGCTTTGGAACCTTCTTCTCCACCATCCATGAATAATCAAACAATCAGAGACTTGCCATTGGCAAGATTTCATGGACAATGTAGCATGGAGGAAAGTATCTCCTGCCTGGCTGCTTTACAGACTAGAACCACTTTCCATGAAATTGAAGGTGGTGTGATGGCTCTGCTGAGAGAGTGTTTGGAGTTAGAACCTAGAGATACAACGACTTTTTTGTGTGGTTATACAGATCATATTCAGAGCATTCGATCTGAGGATTCTGGGTGGGGTTGTGGGTGGCGTAACATCCAAATGCTTAGCTCCCATTTGCTTATGCAAAGGCAAGAGACTCGAGAAGTTTTGTTTGGTGGTGCAGGATTTGTTCCTGATATCCCATCACTCCAAAGATGGCTTGAGATTGCTTGGGAAAAGGGATTTGATGCAGCTGGCTCTGATCAGTTTGCTAACAAAATTTATGGCTTGAAAAGATGGATTGGAACAACTGAATGTGCTGCTATTTTCCGTTCTTTTGGGCTGCGAGCAAGGATAGTGGATTTTGGTCCTAAGGAACTCGAACCATATTATCCTTCTCTTCCTGGTTCAAGGCTTGGGGAAGAGGTCAAGAGAATACATAATGGTGGGAAGAGGAAAGCAATTCAGGTTTGTGGACCGATGGATAGATATTTGCCAGAAAGGAGTCATGATATTAACCAAGCGAGTTCCAGTTGCCGTGAAAAGTCGAGTTGTTCTACTAGCCATATAGGTGATTCTTGGGGTAGGAAAAGTAATTATAATTCGGGAAATAAGTTTTCAAAGAAAAGCAAGGGTCATCAGGTTCTCATGGATTGGATCTGGAATTACTTTAATGATGGTAACGTTACCAAAACCGGCAATCACCGGGTCATTGTTAGTGACAAAACACCCTTGTACTTTCAACATGATGGGCATTCGAGAACCATTGTTGGGATTCAAGTCAAAAATCAACATAACGGGATGCAGCAACACACTCTCTTAATTTTGGACCCTGGTCATAGAACGGCAGACCTGGAAAGATCTCTGAAGGAAAAGAGAGGATGGCAGAAGTTTATAAAAAGAGGAGTTCACACACTGAGAAAGCCACAGTACCAGTTGTGTTATATTGATCCTGGCATTTCAAGTGGAGATGAAGTGGAGTTGCTCAAGACTGTAGATAGTGTTTTTCTTGAACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

446

Amino Acids

50.39

Weight (kDa)

6.79

Isoelectric Point (pI)

54.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C78	PF07910	122 - 231	3.8e-26	Peptidase family C78
Peptidase_C78	PF07910	313 - 421	4.5e-16	Peptidase family C78

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013580)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02940 FvH4_1g02941
pyrus_communis	pycom02g02410
rosa_multiflora	Rmu_sc0003275.1_g000023 Rmu_sc0003275.1_g000043
rosa_roxburghii	Rroxscaffold_2G00152960
rosa_rugosa	Rorug01G0480700 Rorug01G0481200
rosa_samantha	Rh2AG035600 Rh2AG035800 Rh2BG034700 Rh2BG035100 Rh2CG035900 Rh2CG036200 Rh2DG035400 Rh2DG035600
rosa_wichuraiana	Rw2G002800 Rw2G002820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	921, 1217
AclI	AACGTT	1 cut(s)	1005
AclWI	GGATC	2 cut(s)	986, 1265
AcsI	RAATTY	1 cut(s)	600
AcuI	CTGAAG	1 cut(s)	1208
AfaI	GTAC	2 cut(s)	1058, 1253
AfiI	CCNNNNNNNGG	1 cut(s)	1092
AjnI	CCWGG	5 cut(s)	258, 724, 1153, 1173, 1273
AjuI	GAANNNNNNNTTGG	2 cut(s)	477, 509
AluBI	AGCT	2 cut(s)	450, 575
AluI	AGCT	2 cut(s)	450, 575
Alw26I	GTCTC	2 cut(s)	195, 470
AlwI	GGATC	2 cut(s)	986, 1265
Ama87I	CYCGRG	1 cut(s)	480
ApeKI	GCWGC	5 cut(s)	263, 572, 641, 664, 1126
ApoI	RAATTY	1 cut(s)	600
ArsI	GACNNNNNNTTYG	2 cut(s)	122, 154
AspS9I	GGNCC	3 cut(s)	689, 797, 1150
AsuC2I	CCSGG	1 cut(s)	1028
AsuHPI	GGTGA	2 cut(s)	905, 1016
AvaI	CYCGRG	1 cut(s)	480
AvaII	GGWCC	3 cut(s)	689, 797, 1150
AxyI	CCTNAGG	1 cut(s)	693
BbvI	GCAGC	5 cut(s)	250, 584, 628, 651, 1138
BceAI	ACGGC	3 cut(s)	98, 843, 1182
BcgI	CGANNNNNNTGC	2 cut(s)	461, 495
BciT130I	CCWGG	5 cut(s)	260, 726, 1155, 1175, 1275
BclI	TGATCA	1 cut(s)	583
BcnI	CCSGG	1 cut(s)	1028
BcoDI	GTCTC	2 cut(s)	195, 470
BfaI	CTAG	4 cut(s)	276, 345, 882, 1339
BfmI	CTRYAG	1 cut(s)	1314
BglII	AGATCT	1 cut(s)	1181
BisI	GCNGC	5 cut(s)	264, 573, 642, 665, 1127
BlpI	GCTNAGC	1 cut(s)	446
BlsI	GCNGC	5 cut(s)	265, 574, 643, 666, 1128
Bme1390I	CCNGG	6 cut(s)	260, 726, 1028, 1155, 1175, 1275
Bme18I	GGWCC	3 cut(s)	689, 797, 1150
BmeT110I	CYCGRG	1 cut(s)	480
BmgT120I	GGNCC	3 cut(s)	689, 797, 1150
BmiI	GGNNCC	2 cut(s)	162, 1152
BmrFI	CCNGG	6 cut(s)	260, 726, 1028, 1155, 1175, 1275
BmsI	GCATC	2 cut(s)	559, 1113
BoxI	GACNNNNGTC	1 cut(s)	1155
Bpu1102I	GCTNAGC	1 cut(s)	446
BpuEI	CTTGAG	2 cut(s)	563, 1292
BpuMI	CCSGG	1 cut(s)	1028
BsaJI	CCNNGG	1 cut(s)	1153
BsaXI	ACNNNNNCTCC	2 cut(s)	1281, 1311
Bsc4I	CCNNNNNNNGG	1 cut(s)	1092
Bse118I	RCCGGY	1 cut(s)	1016
Bse1I	ACTGG	3 cut(s)	126, 852, 1255
Bse21I	CCTNAGG	1 cut(s)	693
BseBI	CCWGG	5 cut(s)	260, 726, 1155, 1175, 1275
BseDI	CCNNGG	1 cut(s)	1153
BseGI	GGATG	5 cut(s)	65, 176, 435, 1128, 1208
BseLI	CCNNNNNNNGG	1 cut(s)	1092
BseMII	CTCAG	3 cut(s)	311, 393, 1229
BseNI	ACTGG	3 cut(s)	126, 852, 1255
BseRI	GAGGAG	1 cut(s)	1239
BseXI	GCAGC	5 cut(s)	250, 584, 628, 651, 1138
BseYI	CCCAGC	1 cut(s)	144
BsgI	GTGCAG	1 cut(s)	522
BsiHKCI	CYCGRG	1 cut(s)	480
BsiSI	CCGG	2 cut(s)	1017, 1027
BslI	CCNNNNNNNGG	1 cut(s)	1092
BsmAI	GTCTC	2 cut(s)	195, 470
BsmI	GAATGC	2 cut(s)	393, 1075
BsoBI	CYCGRG	1 cut(s)	480
Bsp143I	GATC	6 cut(s)	379, 398, 583, 978, 1181, 1270
Bsp1720I	GCTNAGC	1 cut(s)	446
BspCNI	CTCAG	3 cut(s)	312, 394, 1230
BspHI	TCATGA	1 cut(s)	829
BspLI	GGNNCC	2 cut(s)	162, 1152
BspPI	GGATC	2 cut(s)	986, 1265
BsrFI	RCCGGY	1 cut(s)	1016
BsrI	ACTGG	3 cut(s)	126, 852, 1255
BssAI	RCCGGY	1 cut(s)	1016
BssECI	CCNNGG	1 cut(s)	1153
BssMI	GATC	6 cut(s)	379, 398, 583, 978, 1181, 1270
Bst2UI	CCWGG	5 cut(s)	260, 726, 1155, 1175, 1275
Bst4CI	ACNGT	3 cut(s)	61, 1251, 1315
Bst6I	CTCTTC	3 cut(s)	726, 738, 767
BstC8I	GCNNGC	3 cut(s)	87, 577, 669
BstDEI	CTNAG	5 cut(s)	320, 402, 446, 693, 1238
BstF5I	GGATG	5 cut(s)	65, 176, 435, 1128, 1208
BstKTI	GATC	6 cut(s)	382, 401, 586, 981, 1184, 1273
BstMAI	GTCTC	2 cut(s)	195, 470
BstMBI	GATC	6 cut(s)	379, 398, 583, 978, 1181, 1270
BstNI	CCWGG	5 cut(s)	260, 726, 1155, 1175, 1275
BstNSI	RCATGY	1 cut(s)	89
BstPAI	GACNNNNGTC	1 cut(s)	1155
BstSCI	CCNGG	6 cut(s)	258, 724, 1026, 1153, 1173, 1273
BstSFI	CTRYAG	1 cut(s)	1314
BstV1I	GCAGC	5 cut(s)	250, 584, 628, 651, 1138
BstX2I	RGATCY	2 cut(s)	978, 1181
BstYI	RGATCY	2 cut(s)	978, 1181
Bsu36I	CCTNAGG	1 cut(s)	693
BtsCI	GGATG	5 cut(s)	65, 176, 435, 1128, 1208
BtsIMutI	CAGTG	1 cut(s)	1235
Cac8I	GCNNGC	3 cut(s)	87, 577, 669
CciI	TCATGA	1 cut(s)	829
Cfr10I	RCCGGY	1 cut(s)	1016
Cfr13I	GGNCC	3 cut(s)	689, 797, 1150
Csp6I	GTAC	2 cut(s)	1057, 1252
CspCI	CAANNNNNGTGG	2 cut(s)	660, 695
CviAII	CATG	8 cut(s)	86, 181, 224, 238, 290, 830, 970, 1067
CviQI	GTAC	2 cut(s)	1057, 1252
DdeI	CTNAG	5 cut(s)	320, 402, 446, 693, 1238
DpnI	GATC	6 cut(s)	381, 400, 585, 980, 1183, 1272
DpnII	GATC	6 cut(s)	379, 398, 583, 978, 1181, 1270
Eam1104I	CTCTTC	3 cut(s)	726, 738, 767
EarI	CTCTTC	3 cut(s)	726, 738, 767
Eco32I	GATATC	1 cut(s)	520
Eco47I	GGWCC	3 cut(s)	689, 797, 1150
Eco57I	CTGAAG	1 cut(s)	1208
Eco81I	CCTNAGG	1 cut(s)	693
Eco88I	CYCGRG	1 cut(s)	480
EcoRII	CCWGG	5 cut(s)	258, 724, 1153, 1173, 1273
EcoRV	GATATC	1 cut(s)	520
FaeI	CATG	8 cut(s)	89, 184, 227, 241, 293, 833, 973, 1070
FatI	CATG	8 cut(s)	85, 180, 223, 237, 289, 829, 969, 1066
FbaI	TGATCA	1 cut(s)	583
Fnu4HI	GCNGC	5 cut(s)	264, 573, 642, 665, 1127
FokI	GGATG	5 cut(s)	52, 163, 422, 1135, 1215
Fsp4HI	GCNGC	5 cut(s)	264, 573, 642, 665, 1127
FspBI	CTAG	4 cut(s)	276, 345, 882, 1339
GluI	GCNGC	5 cut(s)	264, 573, 642, 665, 1127
GsaI	CCCAGC	1 cut(s)	148
HapII	CCGG	2 cut(s)	1017, 1027
Hin1II	CATG	8 cut(s)	89, 184, 227, 241, 293, 833, 973, 1070
HinfI	GANTC	6 cut(s)	14, 407, 478, 826, 896, 1096
HpaII	CCGG	2 cut(s)	1017, 1027
HphI	GGTGA	2 cut(s)	905, 1016
Hpy166II	GTNNAC	2 cut(s)	797, 1231
Hpy188I	TCNGA	5 cut(s)	200, 390, 403, 583, 1188
Hpy188III	TCNNGA	9 cut(s)	482, 515, 751, 830, 927, 982, 1080, 1309, 1331
Hpy8I	GTNNAC	2 cut(s)	797, 1231
HpyAV	CCTTC	5 cut(s)	55, 174, 293, 726, 1183
HpyCH4III	ACNGT	3 cut(s)	61, 1251, 1315
HpyCH4IV	ACGT	1 cut(s)	1005
HpyCH4V	TGCA	4 cut(s)	466, 503, 572, 1126
HpyF3I	CTNAG	5 cut(s)	320, 402, 446, 693, 1238
HpySE526I	ACGT	1 cut(s)	1005
Hsp92II	CATG	8 cut(s)	89, 184, 227, 241, 293, 833, 973, 1070
Ksp22I	TGATCA	1 cut(s)	583
Kzo9I	GATC	6 cut(s)	379, 398, 583, 978, 1181, 1270
LmnI	GCTCC	1 cut(s)	455
Lsp1109I	GCAGC	5 cut(s)	250, 584, 628, 651, 1138
LweI	GCATC	2 cut(s)	559, 1113
MaeI	CTAG	4 cut(s)	276, 345, 882, 1339
MaeII	ACGT	1 cut(s)	1005
MaeIII	GTNAC	5 cut(s)	95, 431, 1001, 1006, 1040
MalI	GATC	6 cut(s)	381, 400, 585, 980, 1183, 1272
MboI	GATC	6 cut(s)	379, 398, 583, 978, 1181, 1270
MflI	RGATCY	2 cut(s)	978, 1181
MluCI	AATT	7 cut(s)	294, 600, 783, 916, 922, 985, 1143
MlyI	GAGTC	2 cut(s)	472, 835
MnlI	CCTC	8 cut(s)	79, 97, 235, 397, 739, 768, 1193, 1217
MseI	TTAA	3 cut(s)	837, 993, 1142
MslI	CAYNNNNRTG	3 cut(s)	440, 765, 891
MspA1I	CMGCKG	1 cut(s)	575
MspI	CCGG	2 cut(s)	1017, 1027
MspR9I	CCNGG	6 cut(s)	260, 726, 1028, 1155, 1175, 1275
Mva1269I	GAATGC	2 cut(s)	393, 1075
MvaI	CCWGG	5 cut(s)	260, 726, 1155, 1175, 1275
NciI	CCSGG	1 cut(s)	1028
NdeII	GATC	6 cut(s)	379, 398, 583, 978, 1181, 1270
NlaIII	CATG	8 cut(s)	89, 184, 227, 241, 293, 833, 973, 1070
NlaIV	GGNNCC	2 cut(s)	162, 1152
NmuCI	GTSAC	2 cut(s)	95, 1040
NspI	RCATGY	1 cut(s)	89
PaeI	GCATGC	1 cut(s)	89
PaeR7I	CTCGAG	1 cut(s)	480
PagI	TCATGA	1 cut(s)	829
PctI	GAATGC	2 cut(s)	393, 1075
PfeI	GAWTC	4 cut(s)	14, 407, 896, 1096
PkrI	GCNGC	5 cut(s)	265, 574, 643, 666, 1128
PleI	GAGTC	2 cut(s)	472, 834
PpsI	GAGTC	2 cut(s)	472, 834
PshAI	GACNNNNGTC	1 cut(s)	1155
PsiI	TTATAA	2 cut(s)	921, 1217
Psp1406I	AACGTT	1 cut(s)	1005
Psp6I	CCWGG	5 cut(s)	258, 724, 1153, 1173, 1273
PspFI	CCCAGC	1 cut(s)	144
PspGI	CCWGG	5 cut(s)	258, 724, 1153, 1173, 1273
PspN4I	GGNNCC	2 cut(s)	162, 1152
PspPI	GGNCC	3 cut(s)	689, 797, 1150
PsuI	RGATCY	2 cut(s)	978, 1181
PvuII	CAGCTG	1 cut(s)	575
RsaI	GTAC	2 cut(s)	1058, 1253
RsaNI	GTAC	2 cut(s)	1057, 1252
RseI	CAYNNNNRTG	3 cut(s)	440, 765, 891
SaqAI	TTAA	3 cut(s)	837, 993, 1142
SatI	GCNGC	5 cut(s)	264, 573, 642, 665, 1127
Sau3AI	GATC	6 cut(s)	379, 398, 583, 978, 1181, 1270
Sau96I	GGNCC	3 cut(s)	689, 797, 1150
SchI	GAGTC	2 cut(s)	472, 835
ScrFI	CCNGG	6 cut(s)	260, 726, 1028, 1155, 1175, 1275
SfaNI	GCATC	2 cut(s)	559, 1113
SfcI	CTRYAG	1 cut(s)	1314
Sfr274I	CTCGAG	1 cut(s)	480
SinI	GGWCC	3 cut(s)	689, 797, 1150
SlaI	CTCGAG	1 cut(s)	480
SmiMI	CAYNNNNRTG	3 cut(s)	440, 765, 891
SmlI	CTYRAG	3 cut(s)	480, 542, 1307
SmoI	CTYRAG	3 cut(s)	480, 542, 1307
SphI	GCATGC	1 cut(s)	89
Sse9I	AATT	7 cut(s)	294, 600, 783, 916, 922, 985, 1143
SspMI	CTAG	4 cut(s)	276, 345, 882, 1339
StyD4I	CCNGG	6 cut(s)	258, 724, 1026, 1153, 1173, 1273
TaaI	ACNGT	3 cut(s)	61, 1251, 1315
TaiI	ACGT	1 cut(s)	1008
TaqI	TCGA	5 cut(s)	397, 481, 702, 869, 1079
TaqII	GACCGA	1 cut(s)	814
TasI	AATT	7 cut(s)	294, 600, 783, 916, 922, 985, 1143
TatI	WGTACW	1 cut(s)	1056
TfiI	GAWTC	4 cut(s)	14, 407, 896, 1096
Tru1I	TTAA	3 cut(s)	837, 993, 1142
Tru9I	TTAA	3 cut(s)	837, 993, 1142
TscAI	CASTG	1 cut(s)	1242
TseFI	GTSAC	2 cut(s)	95, 1040
TseI	GCWGC	5 cut(s)	263, 572, 641, 664, 1126
Tsp45I	GTSAC	2 cut(s)	95, 1040
TspDTI	ATGAA	4 cut(s)	197, 212, 306, 1308
TspGWI	ACGGA	1 cut(s)	641
TspRI	CASTG	1 cut(s)	1242
VpaK11BI	GGWCC	3 cut(s)	689, 797, 1150
XapI	RAATTY	1 cut(s)	600
XceI	RCATGY	1 cut(s)	89
XhoI	CTCGAG	1 cut(s)	480
XspI	CTAG	4 cut(s)	276, 345, 882, 1339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.