Rroxscaffold_2G00152960

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0013580
Physical Location & Seq
Forward (+)
89785330 .. 89788717
3388 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00152960.1

Sequence Viewer

Length: 618 bp
ATGGGGAAAGCCATGAATGTTCTAGTTGCTGTGATAGCATTGGCAGCAATGTTACATAGAACAGAAGCGGATGATCATGATCATGAGTATGAGTTGGTTTGGGCTATTCCTTCTGGTGGAGCCGGCACGTATGCAGCCTGGTCGGCCGAGCATACCTTAGAAATCAATGTCGATAGTATAACATTTGAGTTTTCATCAGGAGAACAAGACCTGGCTTTAGTGACAAAGGAGGATTTTGATAGTTGTACCACTACAAATCCGATATGGGAAACAACAGATCCAGCTAATGTTGGAATTGTACAACCCGGCACATTTTATTTCATCTGCACATTTGCCGGCCATTGTGACAAAGGGCAGAAAATTGCCACTAACTGGACCAATTCTTCGGCTGCGGCACCTGCTCCATGTCCAAGTTCAACAGCAACCACTTACTCCGCTCTGCCACTTAAATTTCTCTCCAAAACAGTTAACAAGCACGGAAACAAGAAGAAAGTGTCTCTGACCTTGGGGGTGCCATATAATACATTAAGTTCAAGAGGTCTTCATAATGCACAACAGATATACAGGCACATCCAGCATGCAATGTCCGGCAGGCCGGATGTCAAACACATGCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

205

Amino Acids

22.29

Weight (kDa)

6.34

Isoelectric Point (pI)

36.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 42 - 119 2.7e-13 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 406
Acc36I ACCTGC 1 cut(s) 406
AccB1I GGYRCC 2 cut(s) 394, 511
AccB7I CCANNNNNTGG 1 cut(s) 372
AccBSI CCGCTC 1 cut(s) 437
AciI CCGC 3 cut(s) 68, 392, 435
AclWI GGATC 1 cut(s) 272
AcoI YGGCCR 2 cut(s) 144, 337
AcsI RAATTY 1 cut(s) 449
AfaI GTAC 2 cut(s) 247, 300
AfiI CCNNNNNNNGG 2 cut(s) 116, 372
AgsI TTSAA 2 cut(s) 417, 534
AjnI CCWGG 2 cut(s) 137, 210
AluBI AGCT 1 cut(s) 284
AluI AGCT 1 cut(s) 284
Alw26I GTCTC 1 cut(s) 501
AlwI GGATC 1 cut(s) 272
AoxI GGCC 3 cut(s) 144, 337, 593
ApeKI GCWGC 3 cut(s) 44, 134, 389
ApoI RAATTY 1 cut(s) 449
ArsI GACNNNNNNTTYG 2 cut(s) 367, 399
AspS9I GGNCC 1 cut(s) 375
AsuC2I CCSGG 1 cut(s) 306
AvaII GGWCC 1 cut(s) 375
BanI GGYRCC 2 cut(s) 394, 511
BbsI GAAGAC 1 cut(s) 533
BbvI GCAGC 3 cut(s) 56, 146, 376
BcgI CGANNNNNNTGC 2 cut(s) 123, 157
BciT130I CCWGG 2 cut(s) 139, 212
BclI TGATCA 2 cut(s) 73, 79
BcnI CCSGG 1 cut(s) 306
BcoDI GTCTC 1 cut(s) 501
BfaI CTAG 1 cut(s) 23
BfuAI ACCTGC 1 cut(s) 406
BglI GCCNNNNNGGC 1 cut(s) 143
BisI GCNGC 4 cut(s) 45, 135, 390, 393
BlsI GCNGC 4 cut(s) 46, 136, 391, 394
Bme1390I CCNGG 3 cut(s) 139, 212, 306
Bme18I GGWCC 1 cut(s) 375
BmgT120I GGNCC 1 cut(s) 375
BmiI GGNNCC 3 cut(s) 121, 396, 513
BmrFI CCNGG 3 cut(s) 139, 212, 306
BpiI GAAGAC 1 cut(s) 533
BpuMI CCSGG 1 cut(s) 306
BsaAI YACGTR 1 cut(s) 129
BsaBI GATNNNNATC 1 cut(s) 78
BsaJI CCNNGG 1 cut(s) 504
Bsc4I CCNNNNNNNGG 2 cut(s) 116, 372
Bse118I RCCGGY 2 cut(s) 122, 335
Bse1I ACTGG 1 cut(s) 377
Bse3DI GCAATG 2 cut(s) 54, 588
Bse8I GATNNNNATC 1 cut(s) 78
BseBI CCWGG 2 cut(s) 139, 212
BseDI CCNNGG 1 cut(s) 504
BseGI GGATG 3 cut(s) 76, 570, 604
BseJI GATNNNNATC 1 cut(s) 78
BseLI CCNNNNNNNGG 2 cut(s) 116, 372
BseMI GCAATG 2 cut(s) 54, 588
BseNI ACTGG 1 cut(s) 377
BseX3I CGGCCG 1 cut(s) 144
BseXI GCAGC 3 cut(s) 56, 146, 376
BsgI GTGCAG 1 cut(s) 310
Bsh1285I CGRYCG 1 cut(s) 147
BshFI GGCC 3 cut(s) 146, 339, 595
BshNI GGYRCC 2 cut(s) 394, 511
BsiEI CGRYCG 1 cut(s) 147
BsiSI CCGG 5 cut(s) 123, 306, 336, 588, 596
BslI CCNNNNNNNGG 2 cut(s) 116, 372
BsmAI GTCTC 1 cut(s) 501
BsnI GGCC 3 cut(s) 146, 339, 595
Bsp1407I TGTACA 1 cut(s) 298
Bsp143I GATC 3 cut(s) 73, 79, 277
BspACI CCGC 3 cut(s) 68, 392, 435
BspANI GGCC 3 cut(s) 146, 339, 595
BspHI TCATGA 2 cut(s) 76, 82
BspLI GGNNCC 3 cut(s) 121, 396, 513
BspMI ACCTGC 1 cut(s) 406
BspPI GGATC 1 cut(s) 272
BspT107I GGYRCC 2 cut(s) 394, 511
BsrBI CCGCTC 1 cut(s) 437
BsrDI GCAATG 2 cut(s) 54, 588
BsrFI RCCGGY 2 cut(s) 122, 335
BsrGI TGTACA 1 cut(s) 298
BsrI ACTGG 1 cut(s) 377
BssAI RCCGGY 2 cut(s) 122, 335
BssECI CCNNGG 1 cut(s) 504
BssMI GATC 3 cut(s) 73, 79, 277
BssT1I CCWWGG 1 cut(s) 504
Bst2UI CCWGG 2 cut(s) 139, 212
Bst4CI ACNGT 1 cut(s) 466
BstAUI TGTACA 1 cut(s) 298
BstBAI YACGTR 1 cut(s) 129
BstC8I GCNNGC 4 cut(s) 124, 337, 579, 593
BstDEI CTNAG 1 cut(s) 157
BstF5I GGATG 3 cut(s) 76, 570, 604
BstKTI GATC 3 cut(s) 76, 82, 280
BstMAI GTCTC 1 cut(s) 501
BstMBI GATC 3 cut(s) 73, 79, 277
BstMCI CGRYCG 1 cut(s) 147
BstMWI GCNNNNNNNGC 5 cut(s) 35, 44, 143, 398, 574
BstNI CCWGG 2 cut(s) 139, 212
BstNSI RCATGY 2 cut(s) 581, 613
BstSCI CCNGG 3 cut(s) 137, 210, 304
BstV1I GCAGC 3 cut(s) 56, 146, 376
BstV2I GAAGAC 1 cut(s) 533
BstX2I RGATCY 1 cut(s) 277
BstYI RGATCY 1 cut(s) 277
BstZI CGGCCG 1 cut(s) 144
BsuRI GGCC 3 cut(s) 146, 339, 595
BtsCI GGATG 3 cut(s) 76, 570, 604
BveI ACCTGC 1 cut(s) 406
Cac8I GCNNGC 4 cut(s) 124, 337, 579, 593
CciI TCATGA 2 cut(s) 76, 82
Cfr10I RCCGGY 2 cut(s) 122, 335
Cfr13I GGNCC 1 cut(s) 375
Csp6I GTAC 2 cut(s) 246, 299
CviAII CATG 6 cut(s) 13, 77, 83, 405, 578, 610
CviQI GTAC 2 cut(s) 246, 299
DdeI CTNAG 1 cut(s) 157
DpnI GATC 3 cut(s) 75, 81, 279
DpnII GATC 3 cut(s) 73, 79, 277
EaeI YGGCCR 2 cut(s) 144, 337
EagI CGGCCG 1 cut(s) 144
EclXI CGGCCG 1 cut(s) 144
Eco130I CCWWGG 1 cut(s) 504
Eco47I GGWCC 1 cut(s) 375
Eco52I CGGCCG 1 cut(s) 144
EcoRII CCWGG 2 cut(s) 137, 210
EcoT14I CCWWGG 1 cut(s) 504
ErhI CCWWGG 1 cut(s) 504
FaeI CATG 6 cut(s) 16, 80, 86, 408, 581, 613
FatI CATG 6 cut(s) 12, 76, 82, 404, 577, 609
FbaI TGATCA 2 cut(s) 73, 79
Fnu4HI GCNGC 4 cut(s) 45, 135, 390, 393
FokI GGATG 3 cut(s) 83, 557, 611
Fsp4HI GCNGC 4 cut(s) 45, 135, 390, 393
FspBI CTAG 1 cut(s) 23
GluI GCNGC 4 cut(s) 45, 135, 390, 393
HaeIII GGCC 3 cut(s) 146, 339, 595
HapII CCGG 5 cut(s) 123, 306, 336, 588, 596
Hin1II CATG 6 cut(s) 16, 80, 86, 408, 581, 613
HincII GTYRAC 1 cut(s) 469
HindII GTYRAC 1 cut(s) 469
HpaI GTTAAC 1 cut(s) 469
HpaII CCGG 5 cut(s) 123, 306, 336, 588, 596
Hpy166II GTNNAC 1 cut(s) 469
Hpy188I TCNGA 2 cut(s) 261, 501
Hpy188III TCNNGA 4 cut(s) 77, 83, 198, 534
Hpy8I GTNNAC 1 cut(s) 469
HpyAV CCTTC 1 cut(s) 120
HpyCH4III ACNGT 1 cut(s) 466
HpyCH4IV ACGT 1 cut(s) 128
HpyCH4V TGCA 4 cut(s) 134, 327, 551, 581
HpyF10VI GCNNNNNNNGC 5 cut(s) 35, 44, 143, 398, 574
HpyF3I CTNAG 1 cut(s) 157
HpySE526I ACGT 1 cut(s) 128
Hsp92II CATG 6 cut(s) 16, 80, 86, 408, 581, 613
KroI GCCGGC 2 cut(s) 122, 335
KroNI GCCGGC 2 cut(s) 124, 337
Ksp22I TGATCA 2 cut(s) 73, 79
KspAI GTTAAC 1 cut(s) 469
Kzo9I GATC 3 cut(s) 73, 79, 277
LmnI GCTCC 2 cut(s) 119, 406
Lsp1109I GCAGC 3 cut(s) 56, 146, 376
MaeI CTAG 1 cut(s) 23
MaeII ACGT 1 cut(s) 128
MaeIII GTNAC 3 cut(s) 51, 220, 344
MalI GATC 3 cut(s) 75, 81, 279
MbiI CCGCTC 1 cut(s) 437
MboI GATC 3 cut(s) 73, 79, 277
MboII GAAGA 3 cut(s) 375, 499, 533
MflI RGATCY 1 cut(s) 277
MluCI AATT 4 cut(s) 294, 360, 379, 449
MmeI TCCRAC 1 cut(s) 271
MnlI CCTC 2 cut(s) 223, 530
MroNI GCCGGC 2 cut(s) 122, 335
MseI TTAA 3 cut(s) 447, 468, 527
MslI CAYNNNNRTG 2 cut(s) 81, 87
MspI CCGG 5 cut(s) 123, 306, 336, 588, 596
MspR9I CCNGG 3 cut(s) 139, 212, 306
MvaI CCWGG 2 cut(s) 139, 212
MwoI GCNNNNNNNGC 5 cut(s) 35, 44, 143, 398, 574
NaeI GCCGGC 2 cut(s) 124, 337
NciI CCSGG 1 cut(s) 306
NdeII GATC 3 cut(s) 73, 79, 277
NgoMIV GCCGGC 2 cut(s) 122, 335
NlaIII CATG 6 cut(s) 16, 80, 86, 408, 581, 613
NlaIV GGNNCC 3 cut(s) 121, 396, 513
NmeAIII GCCGAG 1 cut(s) 172
NmuCI GTSAC 2 cut(s) 220, 344
NspI RCATGY 2 cut(s) 581, 613
PaeI GCATGC 1 cut(s) 581
PagI TCATGA 2 cut(s) 76, 82
PaqCI CACCTGC 1 cut(s) 406
PdiI GCCGGC 2 cut(s) 124, 337
PflMI CCANNNNNTGG 1 cut(s) 372
PkrI GCNGC 4 cut(s) 46, 136, 391, 394
Ppu21I YACGTR 1 cut(s) 129
Psp6I CCWGG 2 cut(s) 137, 210
PspGI CCWGG 2 cut(s) 137, 210
PspN4I GGNNCC 3 cut(s) 121, 396, 513
PspPI GGNCC 1 cut(s) 375
PsuI RGATCY 1 cut(s) 277
RsaI GTAC 2 cut(s) 247, 300
RsaNI GTAC 2 cut(s) 246, 299
RseI CAYNNNNRTG 2 cut(s) 81, 87
SaqAI TTAA 3 cut(s) 447, 468, 527
SatI GCNGC 4 cut(s) 45, 135, 390, 393
Sau3AI GATC 3 cut(s) 73, 79, 277
Sau96I GGNCC 1 cut(s) 375
ScrFI CCNGG 3 cut(s) 139, 212, 306
SetI ASST 7 cut(s) 131, 158, 213, 286, 400, 506, 541
SinI GGWCC 1 cut(s) 375
SmiMI CAYNNNNRTG 2 cut(s) 81, 87
SphI GCATGC 1 cut(s) 581
Sse9I AATT 4 cut(s) 294, 360, 379, 449
SsiI CCGC 3 cut(s) 68, 392, 435
SspMI CTAG 1 cut(s) 23
StyD4I CCNGG 3 cut(s) 137, 210, 304
StyI CCWWGG 1 cut(s) 504
TaaI ACNGT 1 cut(s) 466
TaiI ACGT 1 cut(s) 131
TaqI TCGA 1 cut(s) 171
TasI AATT 4 cut(s) 294, 360, 379, 449
TatI WGTACW 1 cut(s) 298
TauI GCSGC 1 cut(s) 395
Tru1I TTAA 3 cut(s) 447, 468, 527
Tru9I TTAA 3 cut(s) 447, 468, 527
TseFI GTSAC 2 cut(s) 220, 344
TseI GCWGC 3 cut(s) 44, 134, 389
Tsp45I GTSAC 2 cut(s) 220, 344
TspDTI ATGAA 4 cut(s) 29, 183, 310, 533
TspGWI ACGGA 1 cut(s) 492
Van91I CCANNNNNTGG 1 cut(s) 372
VpaK11BI GGWCC 1 cut(s) 375
XapI RAATTY 1 cut(s) 449
XceI RCATGY 2 cut(s) 581, 613
XspI CTAG 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.