Rh2BG034700

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0013580
Physical Location & Seq
Reverse (-)
2405350 .. 2406095
746 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG034700.1

Sequence Viewer

Length: 519 bp
ATGGGGAAAGCCATGAATGTTTTATTAGTTGCTGTGATAGCATTGGCAGCAATGTTACATAGAACAGAAGCTGATGATCATGAGTATGAGTTGGTTTGGGCTATTCCGTCTGGTGGAGCCGGCACGTATGCAGCCTGGTCGGCCGAGCATACCTTTGAAATCAACGTCGATAGTATAACATTTGAGTTTTCATCAGGAGAACAAGACCTGGCTTTAGTGACAAAGGAGGATTTTGATAGTTGTACCACTACAAATCCAATATGGGAAACAACAGATCCAGTTGGTGTTGGAATTGTTCAACCCGGCACATTTTATTTCATCTGCACATTCGCCGGCCATTGCGTCAAAGGGCAGAAAGTTGCCACAAACTGGACCAATTCTTCAGCTGCGGCACCTGCTCCATGTCCAAGTTCAACAGCAACCACTTACTCCGCTCTGCCACTTAAATTTCTCTCCAACAGAGTTAACAAGCACGGCAACAAGAAGAAAGTGTCTTTGACATTAGGGGGTGCCATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

172

Amino Acids

18.33

Weight (kDa)

5.43

Isoelectric Point (pI)

30.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 41 - 118 4.3e-14 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 403
Acc36I ACCTGC 1 cut(s) 403
AccB1I GGYRCC 2 cut(s) 391, 509
AccB7I CCANNNNNTGG 1 cut(s) 369
AccBSI CCGCTC 1 cut(s) 434
AciI CCGC 2 cut(s) 389, 432
AclWI GGATC 1 cut(s) 269
AcoI YGGCCR 2 cut(s) 141, 334
AcsI RAATTY 1 cut(s) 446
AcuI CTGAAG 1 cut(s) 366
AfaI GTAC 1 cut(s) 244
AfiI CCNNNNNNNGG 2 cut(s) 113, 369
AgsI TTSAA 3 cut(s) 158, 299, 414
AjnI CCWGG 2 cut(s) 134, 207
AluBI AGCT 2 cut(s) 71, 386
AluI AGCT 2 cut(s) 71, 386
AlwI GGATC 1 cut(s) 269
AlwNI CAGNNNCTG 1 cut(s) 71
AoxI GGCC 2 cut(s) 141, 334
ApeKI GCWGC 3 cut(s) 47, 131, 386
ApoI RAATTY 1 cut(s) 446
AspS9I GGNCC 1 cut(s) 372
AsuC2I CCSGG 1 cut(s) 303
AvaII GGWCC 1 cut(s) 372
BanI GGYRCC 2 cut(s) 391, 509
BbvI GCAGC 3 cut(s) 59, 143, 373
BceAI ACGGC 1 cut(s) 490
BcgI CGANNNNNNTGC 2 cut(s) 120, 154
BciT130I CCWGG 2 cut(s) 136, 209
BclI TGATCA 1 cut(s) 76
BcnI CCSGG 1 cut(s) 303
BfuAI ACCTGC 1 cut(s) 403
BglI GCCNNNNNGGC 1 cut(s) 140
BisI GCNGC 4 cut(s) 48, 132, 387, 390
BlsI GCNGC 4 cut(s) 49, 133, 388, 391
Bme1390I CCNGG 3 cut(s) 136, 209, 303
Bme18I GGWCC 1 cut(s) 372
BmgT120I GGNCC 1 cut(s) 372
BmiI GGNNCC 3 cut(s) 118, 393, 511
BmrFI CCNGG 3 cut(s) 136, 209, 303
BpuMI CCSGG 1 cut(s) 303
BsaAI YACGTR 1 cut(s) 126
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 369
Bse118I RCCGGY 2 cut(s) 119, 332
Bse1I ACTGG 2 cut(s) 278, 374
Bse3DI GCAATG 2 cut(s) 57, 337
BseBI CCWGG 2 cut(s) 136, 209
BseLI CCNNNNNNNGG 2 cut(s) 113, 369
BseMI GCAATG 2 cut(s) 57, 337
BseNI ACTGG 2 cut(s) 278, 374
BseX3I CGGCCG 1 cut(s) 141
BseXI GCAGC 3 cut(s) 59, 143, 373
BsgI GTGCAG 1 cut(s) 307
Bsh1285I CGRYCG 1 cut(s) 144
BshFI GGCC 2 cut(s) 143, 336
BshNI GGYRCC 2 cut(s) 391, 509
BsiEI CGRYCG 1 cut(s) 144
BsiSI CCGG 3 cut(s) 120, 303, 333
BslI CCNNNNNNNGG 2 cut(s) 113, 369
BsnI GGCC 2 cut(s) 143, 336
Bsp143I GATC 2 cut(s) 76, 274
BspACI CCGC 2 cut(s) 389, 432
BspANI GGCC 2 cut(s) 143, 336
BspHI TCATGA 1 cut(s) 79
BspLI GGNNCC 3 cut(s) 118, 393, 511
BspMI ACCTGC 1 cut(s) 403
BspPI GGATC 1 cut(s) 269
BspT107I GGYRCC 2 cut(s) 391, 509
BsrBI CCGCTC 1 cut(s) 434
BsrDI GCAATG 2 cut(s) 57, 337
BsrFI RCCGGY 2 cut(s) 119, 332
BsrI ACTGG 2 cut(s) 278, 374
BssAI RCCGGY 2 cut(s) 119, 332
BssMI GATC 2 cut(s) 76, 274
Bst2UI CCWGG 2 cut(s) 136, 209
BstBAI YACGTR 1 cut(s) 126
BstC8I GCNNGC 2 cut(s) 121, 334
BstKTI GATC 2 cut(s) 79, 277
BstMBI GATC 2 cut(s) 76, 274
BstMCI CGRYCG 1 cut(s) 144
BstMWI GCNNNNNNNGC 4 cut(s) 38, 47, 140, 395
BstNI CCWGG 2 cut(s) 136, 209
BstSCI CCNGG 3 cut(s) 134, 207, 301
BstV1I GCAGC 3 cut(s) 59, 143, 373
BstX2I RGATCY 1 cut(s) 274
BstYI RGATCY 1 cut(s) 274
BstZI CGGCCG 1 cut(s) 141
BsuRI GGCC 2 cut(s) 143, 336
BveI ACCTGC 1 cut(s) 403
Cac8I GCNNGC 2 cut(s) 121, 334
CaiI CAGNNNCTG 1 cut(s) 71
CciI TCATGA 1 cut(s) 79
Cfr10I RCCGGY 2 cut(s) 119, 332
Cfr13I GGNCC 1 cut(s) 372
CseI GACGC 1 cut(s) 331
Csp6I GTAC 1 cut(s) 243
CviAII CATG 3 cut(s) 13, 80, 402
CviJI RGCY 9 cut(s) 11, 71, 101, 119, 134, 143, 212, 336, 386
CviKI_1 RGCY 9 cut(s) 11, 71, 101, 119, 134, 143, 212, 336, 386
CviQI GTAC 1 cut(s) 243
DpnI GATC 2 cut(s) 78, 276
DpnII GATC 2 cut(s) 76, 274
EaeI YGGCCR 2 cut(s) 141, 334
EagI CGGCCG 1 cut(s) 141
EclXI CGGCCG 1 cut(s) 141
Eco47I GGWCC 1 cut(s) 372
Eco52I CGGCCG 1 cut(s) 141
Eco57I CTGAAG 1 cut(s) 366
EcoRII CCWGG 2 cut(s) 134, 207
FaeI CATG 3 cut(s) 16, 83, 405
FaiI YATR 9 cut(s) 14, 60, 81, 87, 129, 150, 176, 262, 403
FatI CATG 3 cut(s) 12, 79, 401
FbaI TGATCA 1 cut(s) 76
Fnu4HI GCNGC 4 cut(s) 48, 132, 387, 390
Fsp4HI GCNGC 4 cut(s) 48, 132, 387, 390
GluI GCNGC 4 cut(s) 48, 132, 387, 390
HaeIII GGCC 2 cut(s) 143, 336
HapII CCGG 3 cut(s) 120, 303, 333
HgaI GACGC 1 cut(s) 331
Hin1II CATG 3 cut(s) 16, 83, 405
HincII GTYRAC 1 cut(s) 466
HindII GTYRAC 1 cut(s) 466
HpaI GTTAAC 1 cut(s) 466
HpaII CCGG 3 cut(s) 120, 303, 333
Hpy166II GTNNAC 1 cut(s) 466
Hpy188III TCNNGA 2 cut(s) 80, 195
Hpy8I GTNNAC 1 cut(s) 466
Hpy99I CGWCG 1 cut(s) 170
HpyCH4IV ACGT 2 cut(s) 125, 165
HpyCH4V TGCA 2 cut(s) 131, 324
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 47, 140, 395
HpySE526I ACGT 2 cut(s) 125, 165
Hsp92II CATG 3 cut(s) 16, 83, 405
KroI GCCGGC 2 cut(s) 119, 332
KroNI GCCGGC 2 cut(s) 121, 334
Ksp22I TGATCA 1 cut(s) 76
KspAI GTTAAC 1 cut(s) 466
Kzo9I GATC 2 cut(s) 76, 274
LmnI GCTCC 2 cut(s) 116, 403
Lsp1109I GCAGC 3 cut(s) 59, 143, 373
MaeII ACGT 2 cut(s) 125, 165
MaeIII GTNAC 2 cut(s) 54, 217
MalI GATC 2 cut(s) 78, 276
MbiI CCGCTC 1 cut(s) 434
MboI GATC 2 cut(s) 76, 274
MboII GAAGA 2 cut(s) 372, 496
MflI RGATCY 1 cut(s) 274
MluCI AATT 3 cut(s) 291, 376, 446
MmeI TCCRAC 2 cut(s) 268, 480
MnlI CCTC 1 cut(s) 220
MroNI GCCGGC 2 cut(s) 119, 332
MseI TTAA 2 cut(s) 444, 465
MslI CAYNNNNRTG 1 cut(s) 84
MspA1I CMGCKG 1 cut(s) 386
MspI CCGG 3 cut(s) 120, 303, 333
MspR9I CCNGG 3 cut(s) 136, 209, 303
MvaI CCWGG 2 cut(s) 136, 209
MwoI GCNNNNNNNGC 4 cut(s) 38, 47, 140, 395
NaeI GCCGGC 2 cut(s) 121, 334
NciI CCSGG 1 cut(s) 303
NdeII GATC 2 cut(s) 76, 274
NgoMIV GCCGGC 2 cut(s) 119, 332
NlaIII CATG 3 cut(s) 16, 83, 405
NlaIV GGNNCC 3 cut(s) 118, 393, 511
NmeAIII GCCGAG 1 cut(s) 169
NmuCI GTSAC 1 cut(s) 217
PagI TCATGA 1 cut(s) 79
PaqCI CACCTGC 1 cut(s) 403
PdiI GCCGGC 2 cut(s) 121, 334
PflMI CCANNNNNTGG 1 cut(s) 369
PkrI GCNGC 4 cut(s) 49, 133, 388, 391
Ppu21I YACGTR 1 cut(s) 126
Psp6I CCWGG 2 cut(s) 134, 207
PspGI CCWGG 2 cut(s) 134, 207
PspN4I GGNNCC 3 cut(s) 118, 393, 511
PspPI GGNCC 1 cut(s) 372
PstNI CAGNNNCTG 1 cut(s) 71
PsuI RGATCY 1 cut(s) 274
PvuII CAGCTG 1 cut(s) 386
RsaI GTAC 1 cut(s) 244
RsaNI GTAC 1 cut(s) 243
RseI CAYNNNNRTG 1 cut(s) 84
SaqAI TTAA 2 cut(s) 444, 465
SatI GCNGC 4 cut(s) 48, 132, 387, 390
Sau3AI GATC 2 cut(s) 76, 274
Sau96I GGNCC 1 cut(s) 372
ScrFI CCNGG 3 cut(s) 136, 209, 303
SetI ASST 7 cut(s) 73, 128, 155, 168, 210, 388, 397
SinI GGWCC 1 cut(s) 372
SmiMI CAYNNNNRTG 1 cut(s) 84
Sse9I AATT 3 cut(s) 291, 376, 446
SsiI CCGC 2 cut(s) 389, 432
StyD4I CCNGG 3 cut(s) 134, 207, 301
TaiI ACGT 2 cut(s) 128, 168
TaqI TCGA 1 cut(s) 168
TasI AATT 3 cut(s) 291, 376, 446
TauI GCSGC 1 cut(s) 392
Tru1I TTAA 2 cut(s) 444, 465
Tru9I TTAA 2 cut(s) 444, 465
TseFI GTSAC 1 cut(s) 217
TseI GCWGC 3 cut(s) 47, 131, 386
Tsp45I GTSAC 1 cut(s) 217
TspDTI ATGAA 3 cut(s) 29, 180, 307
TspGWI ACGGA 1 cut(s) 96
Van91I CCANNNNNTGG 1 cut(s) 369
VpaK11BI GGWCC 1 cut(s) 372
XapI RAATTY 1 cut(s) 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.