Rw2G002800

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0013580
Physical Location & Seq
Reverse (-)
2529713 .. 2530468
756 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G002800.1

Sequence Viewer

Length: 486 bp
ATGAATGTTTTATTAGTTGCCGTGATAGCATTGGCAGCAACGTTACATAGAACAGAAGCTGATGATCATGAGTATGAGTTGGTTTGGGCTATTCCTTCTGGTGGAGCCGGCACGGCGGCACGTATGCAGCCTGCATTTGAGTTTTCGTCAGGAGAACAAGACCTGGCTTTAGTGACAAAGGAGGATTTTGATAGTTGTACCACTACAAATCCGATATGGGAAACAACAGATCCAGTTGGTGTTGGAATTGTTCAACCCGGCACATTTTATTTCATCTGCACATTCGCCGGCCATTGCGCCAAAGGGCAGAAAGTTGCCACAAACTGGACCAATTCTTCAGCTGCGGCACCTGCTCCATGTCCAAGTTCAACAGCAACCACTTACTCCGCTCTGCCACTTAAATTTCTCTCCAACAGAGTTAACAAGCACGGCAACAAGAAGAAAGTACGTGTCTTTGACATTAGGGGGTGCCATCTAAGTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

161

Amino Acids

17.23

Weight (kDa)

6.5

Isoelectric Point (pI)

34.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 45 - 103 2.4e-09 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 358
Acc36I ACCTGC 1 cut(s) 358
AccB1I GGYRCC 2 cut(s) 346, 468
AccB7I CCANNNNNTGG 1 cut(s) 324
AccBSI CCGCTC 1 cut(s) 389
AciI CCGC 3 cut(s) 116, 344, 387
AclI AACGTT 1 cut(s) 41
AclWI GGATC 1 cut(s) 224
AcoI YGGCCR 1 cut(s) 289
AcsI RAATTY 1 cut(s) 401
AcuI CTGAAG 1 cut(s) 321
AfaI GTAC 2 cut(s) 199, 447
AfiI CCNNNNNNNGG 2 cut(s) 101, 324
AflIII ACRYGT 1 cut(s) 448
AgsI TTSAA 2 cut(s) 254, 369
AjnI CCWGG 1 cut(s) 162
AluBI AGCT 2 cut(s) 59, 341
AluI AGCT 2 cut(s) 59, 341
AlwI GGATC 1 cut(s) 224
AlwNI CAGNNNCTG 1 cut(s) 59
AoxI GGCC 1 cut(s) 289
ApeKI GCWGC 3 cut(s) 35, 127, 341
ApoI RAATTY 1 cut(s) 401
AspLEI GCGC 1 cut(s) 299
AspS9I GGNCC 1 cut(s) 327
AsuC2I CCSGG 1 cut(s) 258
AvaII GGWCC 1 cut(s) 327
BanI GGYRCC 2 cut(s) 346, 468
BbvI GCAGC 3 cut(s) 47, 139, 328
BccI CCATC 1 cut(s) 480
BceAI ACGGC 3 cut(s) 5, 129, 445
BciT130I CCWGG 1 cut(s) 164
BclI TGATCA 1 cut(s) 64
BcnI CCSGG 1 cut(s) 258
BfuAI ACCTGC 1 cut(s) 358
BglI GCCNNNNNGGC 1 cut(s) 113
BisI GCNGC 5 cut(s) 36, 117, 128, 342, 345
BlsI GCNGC 5 cut(s) 37, 118, 129, 343, 346
Bme1390I CCNGG 2 cut(s) 164, 258
Bme18I GGWCC 1 cut(s) 327
BmgT120I GGNCC 1 cut(s) 327
BmiI GGNNCC 3 cut(s) 106, 348, 470
BmrFI CCNGG 2 cut(s) 164, 258
BpuMI CCSGG 1 cut(s) 258
BsaAI YACGTR 2 cut(s) 122, 449
Bsc4I CCNNNNNNNGG 2 cut(s) 101, 324
Bse118I RCCGGY 2 cut(s) 107, 287
Bse1I ACTGG 2 cut(s) 233, 329
Bse3DI GCAATG 1 cut(s) 292
BseBI CCWGG 1 cut(s) 164
BseLI CCNNNNNNNGG 2 cut(s) 101, 324
BseMI GCAATG 1 cut(s) 292
BseNI ACTGG 2 cut(s) 233, 329
BseXI GCAGC 3 cut(s) 47, 139, 328
BsgI GTGCAG 1 cut(s) 262
BshFI GGCC 1 cut(s) 291
BshNI GGYRCC 2 cut(s) 346, 468
BsiSI CCGG 3 cut(s) 108, 258, 288
BslI CCNNNNNNNGG 2 cut(s) 101, 324
BsnI GGCC 1 cut(s) 291
Bsp143I GATC 2 cut(s) 64, 229
BspACI CCGC 3 cut(s) 116, 344, 387
BspANI GGCC 1 cut(s) 291
BspHI TCATGA 1 cut(s) 67
BspLI GGNNCC 3 cut(s) 106, 348, 470
BspMI ACCTGC 1 cut(s) 358
BspPI GGATC 1 cut(s) 224
BspT107I GGYRCC 2 cut(s) 346, 468
BsrBI CCGCTC 1 cut(s) 389
BsrDI GCAATG 1 cut(s) 292
BsrFI RCCGGY 2 cut(s) 107, 287
BsrI ACTGG 2 cut(s) 233, 329
BssAI RCCGGY 2 cut(s) 107, 287
BssMI GATC 2 cut(s) 64, 229
Bst2UI CCWGG 1 cut(s) 164
BstBAI YACGTR 2 cut(s) 122, 449
BstC8I GCNNGC 3 cut(s) 109, 132, 289
BstDEI CTNAG 1 cut(s) 476
BstHHI GCGC 1 cut(s) 299
BstKTI GATC 2 cut(s) 67, 232
BstMBI GATC 2 cut(s) 64, 229
BstMWI GCNNNNNNNGC 4 cut(s) 26, 35, 113, 350
BstNI CCWGG 1 cut(s) 164
BstSCI CCNGG 2 cut(s) 162, 256
BstV1I GCAGC 3 cut(s) 47, 139, 328
BstX2I RGATCY 1 cut(s) 229
BstYI RGATCY 1 cut(s) 229
BsuRI GGCC 1 cut(s) 291
BveI ACCTGC 1 cut(s) 358
Cac8I GCNNGC 3 cut(s) 109, 132, 289
CaiI CAGNNNCTG 1 cut(s) 59
CciI TCATGA 1 cut(s) 67
CfoI GCGC 1 cut(s) 299
Cfr10I RCCGGY 2 cut(s) 107, 287
Cfr13I GGNCC 1 cut(s) 327
Csp6I GTAC 2 cut(s) 198, 446
CviAII CATG 2 cut(s) 68, 357
CviJI RGCY 7 cut(s) 59, 89, 107, 130, 167, 291, 341
CviKI_1 RGCY 7 cut(s) 59, 89, 107, 130, 167, 291, 341
CviQI GTAC 2 cut(s) 198, 446
DdeI CTNAG 1 cut(s) 476
DpnI GATC 2 cut(s) 66, 231
DpnII GATC 2 cut(s) 64, 229
EaeI YGGCCR 1 cut(s) 289
Eco47I GGWCC 1 cut(s) 327
Eco57I CTGAAG 1 cut(s) 321
EcoRII CCWGG 1 cut(s) 162
FaeI CATG 2 cut(s) 71, 360
FaiI YATR 6 cut(s) 48, 69, 75, 125, 217, 358
FatI CATG 2 cut(s) 67, 356
FbaI TGATCA 1 cut(s) 64
Fnu4HI GCNGC 5 cut(s) 36, 117, 128, 342, 345
Fsp4HI GCNGC 5 cut(s) 36, 117, 128, 342, 345
GlaI GCGC 1 cut(s) 298
GluI GCNGC 5 cut(s) 36, 117, 128, 342, 345
HaeIII GGCC 1 cut(s) 291
HapII CCGG 3 cut(s) 108, 258, 288
HhaI GCGC 1 cut(s) 299
Hin1II CATG 2 cut(s) 71, 360
Hin6I GCGC 1 cut(s) 297
HinP1I GCGC 1 cut(s) 297
HincII GTYRAC 1 cut(s) 421
HindII GTYRAC 1 cut(s) 421
HpaI GTTAAC 1 cut(s) 421
HpaII CCGG 3 cut(s) 108, 258, 288
Hpy166II GTNNAC 1 cut(s) 421
Hpy188I TCNGA 1 cut(s) 213
Hpy188III TCNNGA 2 cut(s) 68, 150
Hpy8I GTNNAC 1 cut(s) 421
HpyAV CCTTC 1 cut(s) 105
HpyCH4IV ACGT 3 cut(s) 41, 121, 448
HpyCH4V TGCA 3 cut(s) 127, 134, 279
HpyF10VI GCNNNNNNNGC 4 cut(s) 26, 35, 113, 350
HpyF3I CTNAG 1 cut(s) 476
HpySE526I ACGT 3 cut(s) 41, 121, 448
Hsp92II CATG 2 cut(s) 71, 360
HspAI GCGC 1 cut(s) 297
KroI GCCGGC 2 cut(s) 107, 287
KroNI GCCGGC 2 cut(s) 109, 289
Ksp22I TGATCA 1 cut(s) 64
KspAI GTTAAC 1 cut(s) 421
Kzo9I GATC 2 cut(s) 64, 229
LmnI GCTCC 2 cut(s) 104, 358
Lsp1109I GCAGC 3 cut(s) 47, 139, 328
MaeII ACGT 3 cut(s) 41, 121, 448
MaeIII GTNAC 2 cut(s) 42, 172
MalI GATC 2 cut(s) 66, 231
MbiI CCGCTC 1 cut(s) 389
MboI GATC 2 cut(s) 64, 229
MboII GAAGA 2 cut(s) 327, 451
MflI RGATCY 1 cut(s) 229
MluCI AATT 3 cut(s) 246, 331, 401
MmeI TCCRAC 2 cut(s) 223, 435
MnlI CCTC 1 cut(s) 175
MroNI GCCGGC 2 cut(s) 107, 287
MseI TTAA 3 cut(s) 399, 420, 484
MslI CAYNNNNRTG 1 cut(s) 72
MspA1I CMGCKG 1 cut(s) 341
MspI CCGG 3 cut(s) 108, 258, 288
MspR9I CCNGG 2 cut(s) 164, 258
MvaI CCWGG 1 cut(s) 164
MwoI GCNNNNNNNGC 4 cut(s) 26, 35, 113, 350
NaeI GCCGGC 2 cut(s) 109, 289
NciI CCSGG 1 cut(s) 258
NdeII GATC 2 cut(s) 64, 229
NgoMIV GCCGGC 2 cut(s) 107, 287
NlaIII CATG 2 cut(s) 71, 360
NlaIV GGNNCC 3 cut(s) 106, 348, 470
NmuCI GTSAC 1 cut(s) 172
PagI TCATGA 1 cut(s) 67
PaqCI CACCTGC 1 cut(s) 358
PdiI GCCGGC 2 cut(s) 109, 289
PflMI CCANNNNNTGG 1 cut(s) 324
PkrI GCNGC 5 cut(s) 37, 118, 129, 343, 346
Ppu21I YACGTR 2 cut(s) 122, 449
Psp1406I AACGTT 1 cut(s) 41
Psp6I CCWGG 1 cut(s) 162
PspGI CCWGG 1 cut(s) 162
PspN4I GGNNCC 3 cut(s) 106, 348, 470
PspPI GGNCC 1 cut(s) 327
PstNI CAGNNNCTG 1 cut(s) 59
PsuI RGATCY 1 cut(s) 229
PvuII CAGCTG 1 cut(s) 341
RsaI GTAC 2 cut(s) 199, 447
RsaNI GTAC 2 cut(s) 198, 446
RseI CAYNNNNRTG 1 cut(s) 72
SaqAI TTAA 3 cut(s) 399, 420, 484
SatI GCNGC 5 cut(s) 36, 117, 128, 342, 345
Sau3AI GATC 2 cut(s) 64, 229
Sau96I GGNCC 1 cut(s) 327
ScrFI CCNGG 2 cut(s) 164, 258
SetI ASST 7 cut(s) 44, 61, 124, 165, 343, 352, 451
SinI GGWCC 1 cut(s) 327
SmiMI CAYNNNNRTG 1 cut(s) 72
Sse9I AATT 3 cut(s) 246, 331, 401
SsiI CCGC 3 cut(s) 116, 344, 387
StyD4I CCNGG 2 cut(s) 162, 256
TaiI ACGT 3 cut(s) 44, 124, 451
TasI AATT 3 cut(s) 246, 331, 401
TauI GCSGC 2 cut(s) 119, 347
Tru1I TTAA 3 cut(s) 399, 420, 484
Tru9I TTAA 3 cut(s) 399, 420, 484
TseFI GTSAC 1 cut(s) 172
TseI GCWGC 3 cut(s) 35, 127, 341
Tsp45I GTSAC 1 cut(s) 172
TspDTI ATGAA 2 cut(s) 17, 262
Van91I CCANNNNNTGG 1 cut(s) 324
VpaK11BI GGWCC 1 cut(s) 327
XapI RAATTY 1 cut(s) 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.