Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0013580

Physical Location & Seq

Genomic Coordinates Reverse (-)

1495257 .. 1497488

Gene Structure 2232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g02410.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGATCTTAGTTTGGTTTTTTGTTTCTGGTAGTAAAGCTTATGATGAATGCAACAACACCGATATTCTGGGCGTACTAAACCAAGGACCAGCCAGTTACAGCCTCAACGAAACCGGCGATTACTACTTCATCTGCTCCTTCCCAGGCCACTGTAGCGAGGGTCAGAAGTTGAGCATCAAAGTGACAGCTAGTCCTGCTGCCCCTCCTCCTTCTGACAGTAAACCTCCTGCTTCGCCGCCAACCACAACGGCTCCTCCTCCTTCTGACACTAAGACTCCTTTGTCGCCACCAACCACAACCGCACCTCCTCCGTCTGCAGCCTCTTCCCTAGCTTCTACTTTTTCTACTGTTTTTATGTCCATTGCCATTGCTCTTTTCTTTGGAGAACAAGACTTGGCTTTAGTAACCAAGGAGGACTACGACGCCTGCAACACGGACAACCCCTTAGTTGTATTCCAAGAAGGCGGATGGTTTCGGTTTCGTCAGTCGGACACATATTATTTCACCTGCACCTTCGCCGGCCACTGCACCAAAGGTCAAAAGATTGCTCTGTATATTGCTCCCGCTTTTTCTCCTTCTCCAAGTCCATCTTCATGTCCAAGTGAAAAAACTGCTACTCAACATGCTAATGCGGTCAAATTTGTGTCCAAGAAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002239 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009605 GO:0009607 GO:0009628 GO:0009642 GO:0009646 GO:0009889 GO:0009987 GO:0015690 GO:0016020 GO:0019222 GO:0030001 GO:0031224 GO:0031225 GO:0031226 GO:0031323 GO:0031326 GO:0033554 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070417 GO:0071944 GO:0072512 GO:1900376 GO:1901141 GO:2000762

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

220

Amino Acids

23.38

Weight (kDa)

5.35

Isoelectric Point (pI)

66.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013580)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02940 FvH4_1g02941
pyrus_communis	pycom02g02410
rosa_multiflora	Rmu_sc0003275.1_g000023 Rmu_sc0003275.1_g000043
rosa_roxburghii	Rroxscaffold_2G00152960
rosa_rugosa	Rorug01G0480700 Rorug01G0481200
rosa_samantha	Rh2AG035600 Rh2AG035800 Rh2BG034700 Rh2BG035100 Rh2CG035900 Rh2CG036200 Rh2DG035400 Rh2DG035600
rosa_wichuraiana	Rw2G002800 Rw2G002820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	515
AasI	GACNNNNNNGTC	1 cut(s)	280
Acc36I	ACCTGC	1 cut(s)	515
AciI	CCGC	5 cut(s)	236, 300, 465, 564, 632
AcoI	YGGCCR	1 cut(s)	520
AcsI	RAATTY	1 cut(s)	638
AcyI	GRCGYC	1 cut(s)	423
AfaI	GTAC	1 cut(s)	75
AhdI	GACNNNNNGTC	1 cut(s)	189
AjnI	CCWGG	1 cut(s)	142
AjuI	GAANNNNNNNTTGG	2 cut(s)	574, 606
AluBI	AGCT	3 cut(s)	38, 188, 332
AluI	AGCT	3 cut(s)	38, 188, 332
AoxI	GGCC	2 cut(s)	145, 520
ApeKI	GCWGC	2 cut(s)	197, 317
ApoI	RAATTY	1 cut(s)	638
AspS9I	GGNCC	1 cut(s)	86
AsuHPI	GGTGA	1 cut(s)	496
AvaII	GGWCC	1 cut(s)	86
BbvI	GCAGC	2 cut(s)	184, 329
BccI	CCATC	2 cut(s)	462, 595
BceAI	ACGGC	1 cut(s)	264
BciT130I	CCWGG	1 cut(s)	144
BfaI	CTAG	2 cut(s)	189, 329
BfmI	CTRYAG	2 cut(s)	151, 315
BfuAI	ACCTGC	1 cut(s)	515
BisI	GCNGC	3 cut(s)	198, 236, 318
BlsI	GCNGC	3 cut(s)	199, 237, 319
Bme1390I	CCNGG	1 cut(s)	144
Bme18I	GGWCC	1 cut(s)	86
BmeRI	GACNNNNNGTC	1 cut(s)	189
BmgT120I	GGNCC	1 cut(s)	86
BmiI	GGNNCC	1 cut(s)	252
BmrFI	CCNGG	1 cut(s)	144
BmsI	GCATC	1 cut(s)	183
BsaHI	GRCGYC	1 cut(s)	423
BsaJI	CCNNGG	3 cut(s)	82, 142, 408
BsaXI	ACNNNNNCTCC	8 cut(s)	235, 238, 259, 265, 268, 289, 289, 319
Bse118I	RCCGGY	2 cut(s)	113, 518
Bse1I	ACTGG	1 cut(s)	93
Bse3DI	GCAATG	2 cut(s)	360, 366
BseBI	CCWGG	1 cut(s)	144
BseDI	CCNNGG	3 cut(s)	82, 142, 408
BseGI	GGATG	1 cut(s)	473
BseMI	GCAATG	2 cut(s)	360, 366
BseNI	ACTGG	1 cut(s)	93
BseRI	GAGGAG	4 cut(s)	195, 243, 246, 297
BseXI	GCAGC	2 cut(s)	184, 329
BsgI	GTGCAG	2 cut(s)	493, 511
BshFI	GGCC	2 cut(s)	147, 522
BsiSI	CCGG	2 cut(s)	114, 519
BsmI	GAATGC	1 cut(s)	53
BsnI	GGCC	2 cut(s)	147, 522
Bsp143I	GATC	1 cut(s)	3
BspACI	CCGC	5 cut(s)	236, 300, 465, 564, 632
BspANI	GGCC	2 cut(s)	147, 522
BspLI	GGNNCC	1 cut(s)	252
BspMAI	CTGCAG	1 cut(s)	319
BspMI	ACCTGC	1 cut(s)	515
BsrDI	GCAATG	2 cut(s)	360, 366
BsrFI	RCCGGY	2 cut(s)	113, 518
BsrI	ACTGG	1 cut(s)	93
BssAI	RCCGGY	2 cut(s)	113, 518
BssECI	CCNNGG	3 cut(s)	82, 142, 408
BssMI	GATC	1 cut(s)	3
BssNI	GRCGYC	1 cut(s)	423
BssT1I	CCWWGG	2 cut(s)	82, 408
Bst2UI	CCWGG	1 cut(s)	144
Bst4CI	ACNGT	3 cut(s)	152, 218, 349
Bst6I	CTCTTC	1 cut(s)	328
BstACI	GRCGYC	1 cut(s)	423
BstC8I	GCNNGC	2 cut(s)	427, 520
BstDEI	CTNAG	3 cut(s)	7, 270, 445
BstF5I	GGATG	1 cut(s)	473
BstKTI	GATC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	2 cut(s)	153, 194
BstNI	CCWGG	1 cut(s)	144
BstNSI	RCATGY	1 cut(s)	626
BstSCI	CCNGG	1 cut(s)	142
BstSFI	CTRYAG	2 cut(s)	151, 315
BstV1I	GCAGC	2 cut(s)	184, 329
BsuRI	GGCC	2 cut(s)	147, 522
BtsCI	GGATG	1 cut(s)	473
BtsI	GCAGTG	1 cut(s)	523
BtsIMutI	CAGTG	2 cut(s)	148, 523
BveI	ACCTGC	1 cut(s)	515
Cac8I	GCNNGC	2 cut(s)	427, 520
Cfr10I	RCCGGY	2 cut(s)	113, 518
Cfr13I	GGNCC	1 cut(s)	86
CseI	GACGC	1 cut(s)	431
Csp6I	GTAC	1 cut(s)	74
CviAII	CATG	2 cut(s)	594, 623
CviQI	GTAC	1 cut(s)	74
DdeI	CTNAG	3 cut(s)	7, 270, 445
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
DrdI	GACNNNNNNGTC	1 cut(s)	280
DriI	GACNNNNNGTC	1 cut(s)	189
DseDI	GACNNNNNNGTC	1 cut(s)	280
EaeI	YGGCCR	1 cut(s)	520
Eam1104I	CTCTTC	1 cut(s)	328
Eam1105I	GACNNNNNGTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	328
EciI	GGCGGA	1 cut(s)	480
Eco130I	CCWWGG	2 cut(s)	82, 408
Eco47I	GGWCC	1 cut(s)	86
EcoRII	CCWGG	1 cut(s)	142
EcoT14I	CCWWGG	2 cut(s)	82, 408
ErhI	CCWWGG	2 cut(s)	82, 408
FaeI	CATG	2 cut(s)	597, 626
FaiI	YATR	6 cut(s)	42, 356, 496, 555, 595, 624
FalI	AAGNNNNNCTT	2 cut(s)	574, 606
FatI	CATG	2 cut(s)	593, 622
FauI	CCCGC	1 cut(s)	571
Fnu4HI	GCNGC	3 cut(s)	198, 236, 318
FokI	GGATG	1 cut(s)	480
Fsp4HI	GCNGC	3 cut(s)	198, 236, 318
FspBI	CTAG	2 cut(s)	189, 329
GluI	GCNGC	3 cut(s)	198, 236, 318
HaeIII	GGCC	2 cut(s)	147, 522
HapII	CCGG	2 cut(s)	114, 519
HgaI	GACGC	1 cut(s)	431
Hin1I	GRCGYC	1 cut(s)	423
Hin1II	CATG	2 cut(s)	597, 626
HindIII	AAGCTT	1 cut(s)	36
HinfI	GANTC	1 cut(s)	274
HpaII	CCGG	2 cut(s)	114, 519
HphI	GGTGA	1 cut(s)	496
Hpy166II	GTNNAC	1 cut(s)	221
Hpy188I	TCNGA	4 cut(s)	165, 214, 265, 490
Hpy8I	GTNNAC	1 cut(s)	221
Hpy99I	CGWCG	1 cut(s)	425
HpyAV	CCTTC	6 cut(s)	148, 219, 270, 455, 523, 585
HpyCH4III	ACNGT	3 cut(s)	152, 218, 349
HpyCH4V	TGCA	5 cut(s)	51, 317, 429, 510, 528
HpyF10VI	GCNNNNNNNGC	2 cut(s)	153, 194
HpyF3I	CTNAG	3 cut(s)	7, 270, 445
Hsp92I	GRCGYC	1 cut(s)	423
Hsp92II	CATG	2 cut(s)	597, 626
KroI	GCCGGC	1 cut(s)	518
KroNI	GCCGGC	1 cut(s)	520
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	3 cut(s)	140, 256, 565
Lsp1109I	GCAGC	2 cut(s)	184, 329
LweI	GCATC	1 cut(s)	183
MaeI	CTAG	2 cut(s)	189, 329
MaeIII	GTNAC	3 cut(s)	95, 181, 403
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	2 cut(s)	315, 582
MluCI	AATT	1 cut(s)	638
MlyI	GAGTC	1 cut(s)	268
MmeI	TCCRAC	1 cut(s)	468
MroNI	GCCGGC	1 cut(s)	518
MslI	CAYNNNNRTG	3 cut(s)	179, 592, 627
MspI	CCGG	2 cut(s)	114, 519
MspR9I	CCNGG	1 cut(s)	144
Mva1269I	GAATGC	1 cut(s)	53
MvaI	CCWGG	1 cut(s)	144
MwoI	GCNNNNNNNGC	2 cut(s)	153, 194
NaeI	GCCGGC	1 cut(s)	520
NdeII	GATC	1 cut(s)	3
NgoMIV	GCCGGC	1 cut(s)	518
NlaIII	CATG	2 cut(s)	597, 626
NlaIV	GGNNCC	1 cut(s)	252
NmuCI	GTSAC	1 cut(s)	181
NspI	RCATGY	1 cut(s)	626
PaqCI	CACCTGC	1 cut(s)	515
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PctI	GAATGC	1 cut(s)	53
PdiI	GCCGGC	1 cut(s)	520
PkrI	GCNGC	3 cut(s)	199, 237, 319
PleI	GAGTC	1 cut(s)	268
PpsI	GAGTC	1 cut(s)	268
Psp6I	CCWGG	1 cut(s)	142
PspGI	CCWGG	1 cut(s)	142
PspN4I	GGNNCC	1 cut(s)	252
PspPI	GGNCC	1 cut(s)	86
PstI	CTGCAG	1 cut(s)	319
RsaI	GTAC	1 cut(s)	75
RsaNI	GTAC	1 cut(s)	74
RseI	CAYNNNNRTG	3 cut(s)	179, 592, 627
SatI	GCNGC	3 cut(s)	198, 236, 318
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	1 cut(s)	86
SchI	GAGTC	1 cut(s)	268
ScrFI	CCNGG	1 cut(s)	144
SetI	ASST	8 cut(s)	40, 190, 226, 307, 334, 509, 515, 538
SfaNI	GCATC	1 cut(s)	183
SfcI	CTRYAG	2 cut(s)	151, 315
SinI	GGWCC	1 cut(s)	86
SmiMI	CAYNNNNRTG	3 cut(s)	179, 592, 627
Sse9I	AATT	1 cut(s)	638
SsiI	CCGC	5 cut(s)	236, 300, 465, 564, 632
SspMI	CTAG	2 cut(s)	189, 329
StyD4I	CCNGG	1 cut(s)	142
StyI	CCWWGG	2 cut(s)	82, 408
TaaI	ACNGT	3 cut(s)	152, 218, 349
TasI	AATT	1 cut(s)	638
TauI	GCSGC	1 cut(s)	238
TscAI	CASTG	2 cut(s)	155, 530
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	2 cut(s)	197, 317
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	3 cut(s)	60, 118, 582
TspGWI	ACGGA	2 cut(s)	300, 449
TspRI	CASTG	2 cut(s)	155, 530
VpaK11BI	GGWCC	1 cut(s)	86
XapI	RAATTY	1 cut(s)	638
XceI	RCATGY	1 cut(s)	626
XspI	CTAG	2 cut(s)	189, 329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.