Rh2AG035600

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0013580
Physical Location & Seq
Reverse (-)
2655752 .. 2656507
756 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG035600.1

Sequence Viewer

Length: 474 bp
ATGAATGTTTTATTAGTTGCCGTGATAGCATTGGCAGCAACGTTACATAGAACAGAAGCTGATGATCATGAGTATGAGTTGGTTTGGGCTATTCCTTCTGGTGGAGCCGGCACGGCGGCACCATTTGAGTTTTCGTCAGGAGAACAAGACCTGGCTTTAGTGACAAAGGAGGATTTTGATAGTTGTACCACTACAAATCCGATATGGGAAACAACAGATCCAGTTGGTGTTGGAATTGTTCAACCCGGCACATTTTATTTCATCTGCACATTCGCCGGCCATTGCGCCAAAGGGCAGAAAGTTGCCACAAACTGGACCAATTCTTCAGCTGCGGCACCTGCTCCATGTCCAAGTTCAACAGCAACCACTTACTCCGCTCTGCCACTTAAATTTCTCTCCAACAGAGTTAACAAGCACGGCAACAAGAAGAAAGTACGTGTCTTTGACATTAGGGGGTGCCATCTAAGTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

157

Amino Acids

16.75

Weight (kDa)

6.17

Isoelectric Point (pI)

35.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 38 - 99 1.4e-09 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 346
Acc36I ACCTGC 1 cut(s) 346
AccB1I GGYRCC 3 cut(s) 118, 334, 456
AccB7I CCANNNNNTGG 1 cut(s) 312
AccBSI CCGCTC 1 cut(s) 377
AciI CCGC 3 cut(s) 116, 332, 375
AclI AACGTT 1 cut(s) 41
AclWI GGATC 1 cut(s) 212
AcoI YGGCCR 1 cut(s) 277
AcsI RAATTY 1 cut(s) 389
AcuI CTGAAG 1 cut(s) 309
AfaI GTAC 2 cut(s) 187, 435
AfiI CCNNNNNNNGG 2 cut(s) 101, 312
AflIII ACRYGT 1 cut(s) 436
AgsI TTSAA 2 cut(s) 242, 357
AjnI CCWGG 1 cut(s) 150
AluBI AGCT 2 cut(s) 59, 329
AluI AGCT 2 cut(s) 59, 329
AlwI GGATC 1 cut(s) 212
AlwNI CAGNNNCTG 1 cut(s) 59
AoxI GGCC 1 cut(s) 277
ApeKI GCWGC 2 cut(s) 35, 329
ApoI RAATTY 1 cut(s) 389
AspLEI GCGC 1 cut(s) 287
AspS9I GGNCC 1 cut(s) 315
AsuC2I CCSGG 1 cut(s) 246
AvaII GGWCC 1 cut(s) 315
BanI GGYRCC 3 cut(s) 118, 334, 456
BbvI GCAGC 2 cut(s) 47, 316
BccI CCATC 1 cut(s) 468
BceAI ACGGC 3 cut(s) 5, 129, 433
BciT130I CCWGG 1 cut(s) 152
BclI TGATCA 1 cut(s) 64
BcnI CCSGG 1 cut(s) 246
BfuAI ACCTGC 1 cut(s) 346
BglI GCCNNNNNGGC 1 cut(s) 113
BisI GCNGC 4 cut(s) 36, 117, 330, 333
BlsI GCNGC 4 cut(s) 37, 118, 331, 334
Bme1390I CCNGG 2 cut(s) 152, 246
Bme18I GGWCC 1 cut(s) 315
BmgT120I GGNCC 1 cut(s) 315
BmiI GGNNCC 4 cut(s) 106, 120, 336, 458
BmrFI CCNGG 2 cut(s) 152, 246
BpuMI CCSGG 1 cut(s) 246
BsaAI YACGTR 1 cut(s) 437
Bsc4I CCNNNNNNNGG 2 cut(s) 101, 312
Bse118I RCCGGY 2 cut(s) 107, 275
Bse1I ACTGG 2 cut(s) 221, 317
Bse3DI GCAATG 1 cut(s) 280
BseBI CCWGG 1 cut(s) 152
BseLI CCNNNNNNNGG 2 cut(s) 101, 312
BseMI GCAATG 1 cut(s) 280
BseNI ACTGG 2 cut(s) 221, 317
BseXI GCAGC 2 cut(s) 47, 316
BsgI GTGCAG 1 cut(s) 250
BshFI GGCC 1 cut(s) 279
BshNI GGYRCC 3 cut(s) 118, 334, 456
BsiSI CCGG 3 cut(s) 108, 246, 276
BslI CCNNNNNNNGG 2 cut(s) 101, 312
BsnI GGCC 1 cut(s) 279
Bsp143I GATC 2 cut(s) 64, 217
BspACI CCGC 3 cut(s) 116, 332, 375
BspANI GGCC 1 cut(s) 279
BspHI TCATGA 1 cut(s) 67
BspLI GGNNCC 4 cut(s) 106, 120, 336, 458
BspMI ACCTGC 1 cut(s) 346
BspPI GGATC 1 cut(s) 212
BspT107I GGYRCC 3 cut(s) 118, 334, 456
BsrBI CCGCTC 1 cut(s) 377
BsrDI GCAATG 1 cut(s) 280
BsrFI RCCGGY 2 cut(s) 107, 275
BsrI ACTGG 2 cut(s) 221, 317
BssAI RCCGGY 2 cut(s) 107, 275
BssMI GATC 2 cut(s) 64, 217
Bst2UI CCWGG 1 cut(s) 152
BstBAI YACGTR 1 cut(s) 437
BstC8I GCNNGC 2 cut(s) 109, 277
BstDEI CTNAG 1 cut(s) 464
BstHHI GCGC 1 cut(s) 287
BstKTI GATC 2 cut(s) 67, 220
BstMBI GATC 2 cut(s) 64, 217
BstMWI GCNNNNNNNGC 4 cut(s) 26, 35, 113, 338
BstNI CCWGG 1 cut(s) 152
BstSCI CCNGG 2 cut(s) 150, 244
BstV1I GCAGC 2 cut(s) 47, 316
BstX2I RGATCY 1 cut(s) 217
BstYI RGATCY 1 cut(s) 217
BsuRI GGCC 1 cut(s) 279
BveI ACCTGC 1 cut(s) 346
Cac8I GCNNGC 2 cut(s) 109, 277
CaiI CAGNNNCTG 1 cut(s) 59
CciI TCATGA 1 cut(s) 67
CfoI GCGC 1 cut(s) 287
Cfr10I RCCGGY 2 cut(s) 107, 275
Cfr13I GGNCC 1 cut(s) 315
Csp6I GTAC 2 cut(s) 186, 434
CviAII CATG 2 cut(s) 68, 345
CviJI RGCY 6 cut(s) 59, 89, 107, 155, 279, 329
CviKI_1 RGCY 6 cut(s) 59, 89, 107, 155, 279, 329
CviQI GTAC 2 cut(s) 186, 434
DdeI CTNAG 1 cut(s) 464
DpnI GATC 2 cut(s) 66, 219
DpnII GATC 2 cut(s) 64, 217
EaeI YGGCCR 1 cut(s) 277
Eco47I GGWCC 1 cut(s) 315
Eco57I CTGAAG 1 cut(s) 309
EcoRII CCWGG 1 cut(s) 150
FaeI CATG 2 cut(s) 71, 348
FaiI YATR 5 cut(s) 48, 69, 75, 205, 346
FatI CATG 2 cut(s) 67, 344
FbaI TGATCA 1 cut(s) 64
Fnu4HI GCNGC 4 cut(s) 36, 117, 330, 333
Fsp4HI GCNGC 4 cut(s) 36, 117, 330, 333
GlaI GCGC 1 cut(s) 286
GluI GCNGC 4 cut(s) 36, 117, 330, 333
HaeIII GGCC 1 cut(s) 279
HapII CCGG 3 cut(s) 108, 246, 276
HhaI GCGC 1 cut(s) 287
Hin1II CATG 2 cut(s) 71, 348
Hin6I GCGC 1 cut(s) 285
HinP1I GCGC 1 cut(s) 285
HincII GTYRAC 1 cut(s) 409
HindII GTYRAC 1 cut(s) 409
HpaI GTTAAC 1 cut(s) 409
HpaII CCGG 3 cut(s) 108, 246, 276
Hpy166II GTNNAC 1 cut(s) 409
Hpy188I TCNGA 1 cut(s) 201
Hpy188III TCNNGA 2 cut(s) 68, 138
Hpy8I GTNNAC 1 cut(s) 409
HpyAV CCTTC 1 cut(s) 105
HpyCH4IV ACGT 2 cut(s) 41, 436
HpyCH4V TGCA 1 cut(s) 267
HpyF10VI GCNNNNNNNGC 4 cut(s) 26, 35, 113, 338
HpyF3I CTNAG 1 cut(s) 464
HpySE526I ACGT 2 cut(s) 41, 436
Hsp92II CATG 2 cut(s) 71, 348
HspAI GCGC 1 cut(s) 285
KroI GCCGGC 2 cut(s) 107, 275
KroNI GCCGGC 2 cut(s) 109, 277
Ksp22I TGATCA 1 cut(s) 64
KspAI GTTAAC 1 cut(s) 409
Kzo9I GATC 2 cut(s) 64, 217
LmnI GCTCC 2 cut(s) 104, 346
Lsp1109I GCAGC 2 cut(s) 47, 316
MaeII ACGT 2 cut(s) 41, 436
MaeIII GTNAC 2 cut(s) 42, 160
MalI GATC 2 cut(s) 66, 219
MbiI CCGCTC 1 cut(s) 377
MboI GATC 2 cut(s) 64, 217
MboII GAAGA 2 cut(s) 315, 439
MflI RGATCY 1 cut(s) 217
MluCI AATT 3 cut(s) 234, 319, 389
MmeI TCCRAC 2 cut(s) 211, 423
MnlI CCTC 1 cut(s) 163
MroNI GCCGGC 2 cut(s) 107, 275
MseI TTAA 3 cut(s) 387, 408, 472
MslI CAYNNNNRTG 1 cut(s) 72
MspA1I CMGCKG 1 cut(s) 329
MspI CCGG 3 cut(s) 108, 246, 276
MspR9I CCNGG 2 cut(s) 152, 246
MvaI CCWGG 1 cut(s) 152
MwoI GCNNNNNNNGC 4 cut(s) 26, 35, 113, 338
NaeI GCCGGC 2 cut(s) 109, 277
NciI CCSGG 1 cut(s) 246
NdeII GATC 2 cut(s) 64, 217
NgoMIV GCCGGC 2 cut(s) 107, 275
NlaIII CATG 2 cut(s) 71, 348
NlaIV GGNNCC 4 cut(s) 106, 120, 336, 458
NmuCI GTSAC 1 cut(s) 160
PagI TCATGA 1 cut(s) 67
PaqCI CACCTGC 1 cut(s) 346
PdiI GCCGGC 2 cut(s) 109, 277
PflMI CCANNNNNTGG 1 cut(s) 312
PkrI GCNGC 4 cut(s) 37, 118, 331, 334
Ppu21I YACGTR 1 cut(s) 437
Psp1406I AACGTT 1 cut(s) 41
Psp6I CCWGG 1 cut(s) 150
PspGI CCWGG 1 cut(s) 150
PspN4I GGNNCC 4 cut(s) 106, 120, 336, 458
PspPI GGNCC 1 cut(s) 315
PstNI CAGNNNCTG 1 cut(s) 59
PsuI RGATCY 1 cut(s) 217
PvuII CAGCTG 1 cut(s) 329
RsaI GTAC 2 cut(s) 187, 435
RsaNI GTAC 2 cut(s) 186, 434
RseI CAYNNNNRTG 1 cut(s) 72
SaqAI TTAA 3 cut(s) 387, 408, 472
SatI GCNGC 4 cut(s) 36, 117, 330, 333
Sau3AI GATC 2 cut(s) 64, 217
Sau96I GGNCC 1 cut(s) 315
ScrFI CCNGG 2 cut(s) 152, 246
SetI ASST 6 cut(s) 44, 61, 153, 331, 340, 439
SinI GGWCC 1 cut(s) 315
SmiMI CAYNNNNRTG 1 cut(s) 72
Sse9I AATT 3 cut(s) 234, 319, 389
SsiI CCGC 3 cut(s) 116, 332, 375
StyD4I CCNGG 2 cut(s) 150, 244
TaiI ACGT 2 cut(s) 44, 439
TasI AATT 3 cut(s) 234, 319, 389
TauI GCSGC 2 cut(s) 119, 335
Tru1I TTAA 3 cut(s) 387, 408, 472
Tru9I TTAA 3 cut(s) 387, 408, 472
TseFI GTSAC 1 cut(s) 160
TseI GCWGC 2 cut(s) 35, 329
Tsp45I GTSAC 1 cut(s) 160
TspDTI ATGAA 2 cut(s) 17, 250
Van91I CCANNNNNTGG 1 cut(s) 312
VpaK11BI GGWCC 1 cut(s) 315
XapI RAATTY 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.