FvH4_1g02941

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0013580
Physical Location & Seq
Reverse (-)
1661154 .. 1661855
702 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g02941.t1

Sequence Viewer

Length: 489 bp
ATGGGAAAAGCCATGAATGTTTTGGTTGCGGTTATAGCATTGGCAGCAATGTTCTTGCATAGAACAGAAGCTGATGAAATCGAGCACACATTGGTTTGGGCTATTCCTTCTGGCGGAGCCGGCGAGTATGCAACCTGGGCGGCGGAGCATCCCTTTGTACTTGATGGCCAGACTTACGATAGTATAACATTTGAATTTGCAACAGGAGAACAAGACCTGGCTGCAGTGACAAAGGAGGATTTTGACAGTTGTACCACCACAAACCCGATATGGAAAAATTCATATGCAATAAACTATGCGCCTGGTTATGCCAGCACATACTATTTCACCAGCACATTCGCCGGCCATTGCACCAAAGGGCAAAAGATTGCCCTTACCTGGACTTCGGGGGCGGCACCTTCTCCGTGTCCAAGTTCATCAGCAACCACTCACTCCGCTCTGCCACTTAAATTTTTCTCCAAAAGAGTTAACAAGCATGACAACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

163

Amino Acids

17.55

Weight (kDa)

5.58

Isoelectric Point (pI)

41.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 41 - 121 1.6e-08 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 394
AccBSI CCGCTC 1 cut(s) 437
AciI CCGC 6 cut(s) 29, 114, 140, 143, 392, 435
AcoI YGGCCR 2 cut(s) 166, 343
AcsI RAATTY 3 cut(s) 194, 277, 449
AfaI GTAC 2 cut(s) 159, 253
AfiI CCNNNNNNNGG 2 cut(s) 113, 378
AgsI TTSAA 1 cut(s) 194
AjnI CCWGG 4 cut(s) 134, 216, 301, 377
AluBI AGCT 1 cut(s) 71
AluI AGCT 1 cut(s) 71
Alw21I GWGCWC 1 cut(s) 87
AlwNI CAGNNNCTG 1 cut(s) 71
AoxI GGCC 2 cut(s) 166, 343
ApeKI GCWGC 2 cut(s) 44, 221
ApoI RAATTY 3 cut(s) 194, 277, 449
AspLEI GCGC 1 cut(s) 301
AsuHPI GGTGA 1 cut(s) 319
BaeI ACNNNNGTAYC 2 cut(s) 235, 268
BalI TGGCCA 1 cut(s) 168
BanI GGYRCC 1 cut(s) 394
Bbv12I GWGCWC 1 cut(s) 87
BbvI GCAGC 2 cut(s) 56, 208
BccI CCATC 1 cut(s) 158
BciT130I CCWGG 4 cut(s) 136, 218, 303, 379
BfmI CTRYAG 1 cut(s) 222
BisI GCNGC 4 cut(s) 45, 141, 222, 393
BlsI GCNGC 4 cut(s) 46, 142, 223, 394
Bme1390I CCNGG 4 cut(s) 136, 218, 303, 379
BmiI GGNNCC 2 cut(s) 118, 396
BmrFI CCNGG 4 cut(s) 136, 218, 303, 379
BmsI GCATC 1 cut(s) 157
BsaJI CCNNGG 1 cut(s) 135
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 378
Bse118I RCCGGY 2 cut(s) 119, 341
Bse3DI GCAATG 2 cut(s) 54, 346
BseBI CCWGG 4 cut(s) 136, 218, 303, 379
BseDI CCNNGG 1 cut(s) 135
BseGI GGATG 1 cut(s) 148
BseLI CCNNNNNNNGG 2 cut(s) 113, 378
BseMI GCAATG 2 cut(s) 54, 346
BseXI GCAGC 2 cut(s) 56, 208
BshFI GGCC 2 cut(s) 168, 345
BshNI GGYRCC 1 cut(s) 394
BsiHKAI GWGCWC 1 cut(s) 87
BsiSI CCGG 2 cut(s) 120, 342
BslI CCNNNNNNNGG 2 cut(s) 113, 378
BsnI GGCC 2 cut(s) 168, 345
Bsp1286I GDGCHC 1 cut(s) 87
BspACI CCGC 6 cut(s) 29, 114, 140, 143, 392, 435
BspANI GGCC 2 cut(s) 168, 345
BspLI GGNNCC 2 cut(s) 118, 396
BspMAI CTGCAG 1 cut(s) 226
BspT107I GGYRCC 1 cut(s) 394
BsrBI CCGCTC 1 cut(s) 437
BsrDI GCAATG 2 cut(s) 54, 346
BsrFI RCCGGY 2 cut(s) 119, 341
BssAI RCCGGY 2 cut(s) 119, 341
BssECI CCNNGG 1 cut(s) 135
Bst2UI CCWGG 4 cut(s) 136, 218, 303, 379
Bst4CI ACNGT 1 cut(s) 248
BstC8I GCNNGC 3 cut(s) 121, 313, 343
BstF5I GGATG 1 cut(s) 148
BstHHI GCGC 1 cut(s) 301
BstMWI GCNNNNNNNGC 4 cut(s) 35, 44, 120, 137
BstNI CCWGG 4 cut(s) 136, 218, 303, 379
BstSCI CCNGG 4 cut(s) 134, 216, 301, 377
BstSFI CTRYAG 1 cut(s) 222
BstV1I GCAGC 2 cut(s) 56, 208
BsuRI GGCC 2 cut(s) 168, 345
BtsCI GGATG 1 cut(s) 148
BtsI GCAGTG 1 cut(s) 231
BtsIMutI CAGTG 1 cut(s) 231
Cac8I GCNNGC 3 cut(s) 121, 313, 343
CaiI CAGNNNCTG 1 cut(s) 71
CfoI GCGC 1 cut(s) 301
Cfr10I RCCGGY 2 cut(s) 119, 341
Csp6I GTAC 2 cut(s) 158, 252
CviAII CATG 2 cut(s) 13, 476
CviJI RGCY 7 cut(s) 11, 71, 101, 119, 168, 221, 345
CviKI_1 RGCY 7 cut(s) 11, 71, 101, 119, 168, 221, 345
CviQI GTAC 2 cut(s) 158, 252
EaeI YGGCCR 2 cut(s) 166, 343
EciI GGCGGA 2 cut(s) 129, 158
EcoRII CCWGG 4 cut(s) 134, 216, 301, 377
FaeI CATG 2 cut(s) 16, 479
FatI CATG 2 cut(s) 12, 475
FauNDI CATATG 1 cut(s) 283
Fnu4HI GCNGC 4 cut(s) 45, 141, 222, 393
FokI GGATG 1 cut(s) 135
Fsp4HI GCNGC 4 cut(s) 45, 141, 222, 393
GlaI GCGC 1 cut(s) 300
GluI GCNGC 4 cut(s) 45, 141, 222, 393
HaeIII GGCC 2 cut(s) 168, 345
HapII CCGG 2 cut(s) 120, 342
HhaI GCGC 1 cut(s) 301
Hin1II CATG 2 cut(s) 16, 479
Hin6I GCGC 1 cut(s) 299
HinP1I GCGC 1 cut(s) 299
HincII GTYRAC 1 cut(s) 469
HindII GTYRAC 1 cut(s) 469
HpaI GTTAAC 1 cut(s) 469
HpaII CCGG 2 cut(s) 120, 342
HphI GGTGA 1 cut(s) 319
Hpy166II GTNNAC 1 cut(s) 469
Hpy8I GTNNAC 1 cut(s) 469
HpyAV CCTTC 2 cut(s) 117, 408
HpyCH4III ACNGT 1 cut(s) 248
HpyCH4V TGCA 6 cut(s) 58, 131, 200, 224, 287, 351
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 44, 120, 137
Hsp92II CATG 2 cut(s) 16, 479
HspAI GCGC 1 cut(s) 299
KroI GCCGGC 2 cut(s) 119, 341
KroNI GCCGGC 2 cut(s) 121, 343
KspAI GTTAAC 1 cut(s) 469
LmnI GCTCC 2 cut(s) 116, 145
Lsp1109I GCAGC 2 cut(s) 56, 208
LweI GCATC 1 cut(s) 157
MaeIII GTNAC 1 cut(s) 226
MbiI CCGCTC 1 cut(s) 437
MhlI GDGCHC 1 cut(s) 87
MlsI TGGCCA 1 cut(s) 168
MluCI AATT 3 cut(s) 194, 277, 449
MluNI TGGCCA 1 cut(s) 168
MnlI CCTC 1 cut(s) 229
Mox20I TGGCCA 1 cut(s) 168
MroNI GCCGGC 2 cut(s) 119, 341
MscI TGGCCA 1 cut(s) 168
MseI TTAA 2 cut(s) 447, 468
Msp20I TGGCCA 1 cut(s) 168
MspI CCGG 2 cut(s) 120, 342
MspR9I CCNGG 4 cut(s) 136, 218, 303, 379
MvaI CCWGG 4 cut(s) 136, 218, 303, 379
MwoI GCNNNNNNNGC 4 cut(s) 35, 44, 120, 137
NaeI GCCGGC 2 cut(s) 121, 343
NdeI CATATG 1 cut(s) 283
NgoMIV GCCGGC 2 cut(s) 119, 341
NlaIII CATG 2 cut(s) 16, 479
NlaIV GGNNCC 2 cut(s) 118, 396
NmuCI GTSAC 1 cut(s) 226
PdiI GCCGGC 2 cut(s) 121, 343
PkrI GCNGC 4 cut(s) 46, 142, 223, 394
Psp6I CCWGG 4 cut(s) 134, 216, 301, 377
PspGI CCWGG 4 cut(s) 134, 216, 301, 377
PspN4I GGNNCC 2 cut(s) 118, 396
PstI CTGCAG 1 cut(s) 226
PstNI CAGNNNCTG 1 cut(s) 71
RsaI GTAC 2 cut(s) 159, 253
RsaNI GTAC 2 cut(s) 158, 252
SaqAI TTAA 2 cut(s) 447, 468
SatI GCNGC 4 cut(s) 45, 141, 222, 393
ScrFI CCNGG 4 cut(s) 136, 218, 303, 379
SduI GDGCHC 1 cut(s) 87
SetI ASST 5 cut(s) 73, 137, 219, 380, 400
SfaNI GCATC 1 cut(s) 157
SfcI CTRYAG 1 cut(s) 222
Sse9I AATT 3 cut(s) 194, 277, 449
SsiI CCGC 6 cut(s) 29, 114, 140, 143, 392, 435
StyD4I CCNGG 4 cut(s) 134, 216, 301, 377
TaaI ACNGT 1 cut(s) 248
TaqI TCGA 1 cut(s) 81
TasI AATT 3 cut(s) 194, 277, 449
TatI WGTACW 1 cut(s) 157
TauI GCSGC 2 cut(s) 143, 395
Tru1I TTAA 2 cut(s) 447, 468
Tru9I TTAA 2 cut(s) 447, 468
TscAI CASTG 1 cut(s) 231
TseFI GTSAC 1 cut(s) 226
TseI GCWGC 2 cut(s) 44, 221
Tsp45I GTSAC 1 cut(s) 226
TspDTI ATGAA 4 cut(s) 29, 90, 270, 405
TspGWI ACGGA 1 cut(s) 393
TspRI CASTG 1 cut(s) 231
XapI RAATTY 3 cut(s) 194, 277, 449
XcmI CCANNNNNNNNNTGG 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.