FvH4_1g03510

Adenine nucleotide transporter BT1, chloroplastic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0014630
Physical Location & Seq
Forward (+)
1918206 .. 1920007
1802 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g03510.t1

Sequence Viewer

Length: 1227 bp
ATGATGGATAGAGGAAGATTGCAAGTGATTGAACATGCAAGTGAAGAATTTGTGTTGTTTTGTTCTGGGATTAGGATTCAGTGGAGTCCTCCAGAGAACGCTTCTCGTGGCTTATTTGCAAGTATTGGTCAAGTGGCAATGGGAATGGGGTTTGGTATTTCACCTAATCCACAGAATCTTAGGATGGACAGCACCACAAAACTACTGAGCTCCACATACATGAGATATGTGCCTGTGCCGGATTTGGGTTTTCGGGTCAGTGGAGTTCAAGAGTTGGTGATGGAAGAAGTACTAGAGATTGAAGAGGAAGCAGAGGTTGTGACCATGAACAAAATGAAGAACAGAATACATGGTTTTGGAAAGAAAATCAAGATTGCTAATGCATCACTAAGAAGGCTGCTGAGTGGAGCCATAGCAGGTGTTGTGTCAAGGACAGCAGTTGCACCATTGGAGACCATAAGGACCAACTTAATGGTGGGGAGCTGTGGCAACTCATCCAGTGCAGTATTTCAGTCTATCATGGGAGCTGATGGATGGCAAGGCTTGTATAGAGGCAATTTGGTTAATGTCATTCGCGTTGCGCCAAGCAAGGGTATAGAGTTATTTGTGTTTGATATGGTGAACAAGTACTTGACTAGACCAGGGGAAGAGCTGAAAGTCCCTATTCCTGCTTCATCAATCGCAGGCGCCCTTGCTGGATTTAGCTCAACCTTGTGTACATACCCTCTTGAGCTGTTAAAAACACGATTCACTGTCCAGAGAGGAGTGTACAATAACTTTTTTGATGCATTTTCCAAGATTGTCATAGAGGGAGGACCTGGAGAGCTGTACAGAGGCCTTACACCAAGTCTAATAGGAGTAATCCCATATGCTGCCTCCAACTATTTCGCTTATGATACACTCTCAAAAGCTTATAAGAAGGCTTCCAAGAAGGAGGAAATCGGAAATGTAATGACGCTGTTGATTGGATCAGCATCTGCTGCATTTTCAAGCAGCGCAACTTTCCCACTTGAGGTTGCTCGGAAGCAAATGCAGGTCAATGGGAGACAATACAAACACATACTTCATGCTCTTTGTAGCATATTTGAAAGTGAAGGACTCGCTGGTTTGTACAAAGGGTTAGGGCCAAGCTGCATGAAGCTGGTTCCTGCTGCTGGGATATCCTTCATGTGCTACGAAGCATGCAAGAGGATACTCGCTGAGAACGAGAATCAGGAAGAAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

409

Amino Acids

44.47

Weight (kDa)

8.83

Isoelectric Point (pI)

45.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 130 - 213 6.4e-19 Mitochondrial carrier protein
Mito_carr PF00153 220 - 307 3.8e-22 Mitochondrial carrier protein
Mito_carr PF00153 316 - 401 2.8e-22 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014630)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03510
malus_domestica MD02G1034100.v1.1 MD15G1174900.v1.1
prunus_persica Prupe.7G241000_v2.0.a1
pyrus_communis pycom02g02790 pycom15g15640
rosa_chinensis RchiOBHm_Chr2g0088721
rosa_laevigata RLG00000015979
rosa_multiflora Rmu_sc0006835.1_g000004
rosa_roxburghii Rroxscaffold_2G00152370
rosa_rugosa Rorug01G0486500 Rorug01G0486600
rosa_samantha Rh2AG041700 Rh2BG040400 Rh2CG041200 Rh2DG040800
rosa_wichuraiana Rw2G003270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 915
AarI CACCTGC 1 cut(s) 407
Acc36I ACCTGC 2 cut(s) 407, 1024
AccB1I GGYRCC 1 cut(s) 686
AccII CGCG 1 cut(s) 576
AclWI GGATC 1 cut(s) 976
AcsI RAATTY 1 cut(s) 47
AcyI GRCGYC 1 cut(s) 687
AfaI GTAC 6 cut(s) 291, 629, 718, 770, 830, 1112
AfiI CCNNNNNNNGG 4 cut(s) 245, 590, 1012, 1154
AgsI TTSAA 5 cut(s) 32, 269, 302, 990, 1088
AjnI CCWGG 2 cut(s) 640, 817
Alw21I GWGCWC 1 cut(s) 212
Alw26I GTCTC 2 cut(s) 446, 1039
AlwI GGATC 1 cut(s) 976
AlwNI CAGNNNCTG 1 cut(s) 977
AoxI GGCC 2 cut(s) 835, 1124
ApeKI GCWGC 6 cut(s) 397, 872, 980, 993, 1131, 1151
ApoI RAATTY 1 cut(s) 47
AspLEI GCGC 3 cut(s) 583, 689, 998
AspS9I GGNCC 3 cut(s) 462, 815, 1124
AsuHPI GGTGA 3 cut(s) 153, 289, 631
AvaII GGWCC 2 cut(s) 462, 815
BanI GGYRCC 1 cut(s) 686
BanII GRGCYC 1 cut(s) 212
BauI CACGAG 1 cut(s) 105
Bbv12I GWGCWC 1 cut(s) 212
BbvI GCAGC 6 cut(s) 384, 859, 967, 1005, 1118, 1138
BccI CCATC 4 cut(s) 178, 274, 524, 528
BciT130I CCWGG 2 cut(s) 642, 819
BciVI GTATCC 1 cut(s) 1185
BcoDI GTCTC 2 cut(s) 446, 1039
BfaI CTAG 2 cut(s) 293, 636
BfoI RGCGCY 1 cut(s) 690
BfuAI ACCTGC 2 cut(s) 407, 1024
BfuI GTATCC 1 cut(s) 1185
BisI GCNGC 6 cut(s) 398, 873, 981, 994, 1132, 1152
BlsI GCNGC 6 cut(s) 399, 874, 982, 995, 1133, 1153
BmcAI AGTACT 2 cut(s) 291, 629
Bme1390I CCNGG 2 cut(s) 642, 819
Bme18I GGWCC 2 cut(s) 462, 815
BmgT120I GGNCC 3 cut(s) 462, 815, 1124
BmiI GGNNCC 3 cut(s) 409, 688, 1146
BmrFI CCNGG 2 cut(s) 642, 819
BmsI GCATC 3 cut(s) 392, 775, 983
BpmI CTGGAG 2 cut(s) 75, 840
BpuEI CTTGAG 2 cut(s) 749, 1031
BsaBI GATNNNNATC 1 cut(s) 973
BsaHI GRCGYC 1 cut(s) 687
BsaI GGTCTC 1 cut(s) 446
BsaJI CCNNGG 1 cut(s) 641
Bsc4I CCNNNNNNNGG 4 cut(s) 245, 590, 1012, 1154
Bse1I ACTGG 1 cut(s) 498
Bse3DI GCAATG 1 cut(s) 144
Bse8I GATNNNNATC 1 cut(s) 973
BseBI CCWGG 2 cut(s) 642, 819
BseDI CCNNGG 1 cut(s) 641
BseGI GGATG 3 cut(s) 189, 494, 539
BseJI GATNNNNATC 1 cut(s) 973
BseLI CCNNNNNNNGG 4 cut(s) 245, 590, 1012, 1154
BseMI GCAATG 1 cut(s) 144
BseMII CTCAG 3 cut(s) 197, 392, 1191
BseNI ACTGG 1 cut(s) 498
BseRI GAGGAG 1 cut(s) 777
BseXI GCAGC 6 cut(s) 384, 859, 967, 1005, 1118, 1138
BseYI CCCAGC 1 cut(s) 1154
BsgI GTGCAG 1 cut(s) 522
Bsh1236I CGCG 1 cut(s) 576
BshFI GGCC 2 cut(s) 837, 1126
BshNI GGYRCC 1 cut(s) 686
BsiHKAI GWGCWC 1 cut(s) 212
BsiSI CCGG 1 cut(s) 239
BslFI GGGAC 1 cut(s) 644
BslI CCNNNNNNNGG 4 cut(s) 245, 590, 1012, 1154
BsmAI GTCTC 2 cut(s) 446, 1039
BsmFI GGGAC 1 cut(s) 644
BsnI GGCC 2 cut(s) 837, 1126
Bso31I GGTCTC 1 cut(s) 446
Bsp1286I GDGCHC 1 cut(s) 212
Bsp1407I TGTACA 4 cut(s) 716, 768, 828, 1110
Bsp143I GATC 1 cut(s) 968
BspANI GGCC 2 cut(s) 837, 1126
BspCNI CTCAG 3 cut(s) 198, 393, 1192
BspFNI CGCG 1 cut(s) 576
BspLI GGNNCC 3 cut(s) 409, 688, 1146
BspMI ACCTGC 2 cut(s) 407, 1024
BspPI GGATC 1 cut(s) 976
BspQI GCTCTTC 1 cut(s) 642
BspT107I GGYRCC 1 cut(s) 686
BspTNI GGTCTC 1 cut(s) 446
BsrDI GCAATG 1 cut(s) 144
BsrGI TGTACA 4 cut(s) 716, 768, 828, 1110
BsrI ACTGG 1 cut(s) 498
BssECI CCNNGG 1 cut(s) 641
BssMI GATC 1 cut(s) 968
BssNI GRCGYC 1 cut(s) 687
BssSI CACGAG 1 cut(s) 105
Bst2BI CACGAG 1 cut(s) 105
Bst2UI CCWGG 2 cut(s) 642, 819
Bst4CI ACNGT 1 cut(s) 754
Bst6I CTCTTC 2 cut(s) 297, 642
BstACI GRCGYC 1 cut(s) 687
BstAPI GCANNNNNTGC 1 cut(s) 980
BstAUI TGTACA 4 cut(s) 716, 768, 828, 1110
BstC8I GCNNGC 2 cut(s) 685, 1183
BstDEI CTNAG 5 cut(s) 179, 206, 389, 401, 1200
BstF5I GGATG 3 cut(s) 189, 494, 539
BstFNI CGCG 1 cut(s) 576
BstH2I RGCGCY 1 cut(s) 690
BstHHI GCGC 3 cut(s) 583, 689, 998
BstKTI GATC 1 cut(s) 971
BstMAI GTCTC 2 cut(s) 446, 1039
BstMBI GATC 1 cut(s) 968
BstMWI GCNNNNNNNGC 1 cut(s) 980
BstNI CCWGG 2 cut(s) 642, 819
BstNSI RCATGY 2 cut(s) 38, 1185
BstSCI CCNGG 2 cut(s) 640, 817
BstUI CGCG 1 cut(s) 576
BstV1I GCAGC 6 cut(s) 384, 859, 967, 1005, 1118, 1138
BstXI CCANNNNNNTGG 1 cut(s) 472
BsuI GTATCC 1 cut(s) 1185
BsuRI GGCC 2 cut(s) 837, 1126
BtsCI GGATG 3 cut(s) 189, 494, 539
BtsIMutI CAGTG 4 cut(s) 86, 265, 505, 750
BveI ACCTGC 2 cut(s) 407, 1024
Cac8I GCNNGC 2 cut(s) 685, 1183
CaiI CAGNNNCTG 1 cut(s) 977
CfoI GCGC 3 cut(s) 583, 689, 998
Cfr13I GGNCC 3 cut(s) 462, 815, 1124
CseI GACGC 1 cut(s) 964
Csp6I GTAC 6 cut(s) 290, 628, 717, 769, 829, 1111
CviAII CATG 9 cut(s) 35, 220, 325, 350, 520, 1067, 1135, 1168, 1182
CviQI GTAC 6 cut(s) 290, 628, 717, 769, 829, 1111
DdeI CTNAG 5 cut(s) 179, 206, 389, 401, 1200
DinI GGCGCC 1 cut(s) 688
DpnI GATC 1 cut(s) 970
DpnII GATC 1 cut(s) 968
Eam1104I CTCTTC 2 cut(s) 297, 642
EarI CTCTTC 2 cut(s) 297, 642
Ecl136II GAGCTC 1 cut(s) 210
Eco147I AGGCCT 1 cut(s) 837
Eco24I GRGCYC 1 cut(s) 212
Eco31I GGTCTC 1 cut(s) 446
Eco32I GATATC 1 cut(s) 1161
Eco47I GGWCC 2 cut(s) 462, 815
Eco53kI GAGCTC 1 cut(s) 210
EcoICRI GAGCTC 1 cut(s) 210
EcoO109I RGGNCCY 1 cut(s) 815
EcoRII CCWGG 2 cut(s) 640, 817
EcoRV GATATC 1 cut(s) 1161
EcoT22I ATGCAT 2 cut(s) 385, 790
EcoT38I GRGCYC 1 cut(s) 212
EgeI GGCGCC 1 cut(s) 688
EheI GGCGCC 1 cut(s) 688
FaeI CATG 9 cut(s) 38, 223, 328, 353, 523, 1070, 1138, 1171, 1185
FaqI GGGAC 1 cut(s) 644
FatI CATG 9 cut(s) 34, 219, 324, 349, 519, 1066, 1134, 1167, 1181
FauNDI CATATG 1 cut(s) 868
Fnu4HI GCNGC 6 cut(s) 398, 873, 981, 994, 1132, 1152
FokI GGATG 3 cut(s) 196, 481, 546
FriOI GRGCYC 1 cut(s) 212
Fsp4HI GCNGC 6 cut(s) 398, 873, 981, 994, 1132, 1152
FspBI CTAG 2 cut(s) 293, 636
GlaI GCGC 3 cut(s) 582, 688, 997
GluI GCNGC 6 cut(s) 398, 873, 981, 994, 1132, 1152
GsaI CCCAGC 1 cut(s) 1158
GsuI CTGGAG 2 cut(s) 75, 840
HaeII RGCGCY 1 cut(s) 690
HaeIII GGCC 2 cut(s) 837, 1126
HapII CCGG 1 cut(s) 239
HgaI GACGC 1 cut(s) 964
HhaI GCGC 3 cut(s) 583, 689, 998
Hin1I GRCGYC 1 cut(s) 687
Hin1II CATG 9 cut(s) 38, 223, 328, 353, 523, 1070, 1138, 1171, 1185
Hin6I GCGC 3 cut(s) 581, 687, 996
HinP1I GCGC 3 cut(s) 581, 687, 996
HindIII AAGCTT 1 cut(s) 909
HinfI GANTC 6 cut(s) 76, 85, 175, 747, 1098, 1210
HpaII CCGG 1 cut(s) 239
HphI GGTGA 3 cut(s) 153, 289, 631
Hpy166II GTNNAC 3 cut(s) 622, 717, 769
Hpy188I TCNGA 2 cut(s) 944, 1023
Hpy188III TCNNGA 6 cut(s) 92, 269, 370, 728, 757, 1214
Hpy8I GTNNAC 3 cut(s) 622, 717, 769
HpyAV CCTTC 5 cut(s) 387, 913, 925, 1088, 1174
HpyCH4III ACNGT 1 cut(s) 754
HpyF10VI GCNNNNNNNGC 1 cut(s) 980
HpyF3I CTNAG 5 cut(s) 179, 206, 389, 401, 1200
Hsp92I GRCGYC 1 cut(s) 687
Hsp92II CATG 9 cut(s) 38, 223, 328, 353, 523, 1070, 1138, 1171, 1185
HspAI GCGC 3 cut(s) 581, 687, 996
KasI GGCGCC 1 cut(s) 686
Kzo9I GATC 1 cut(s) 968
LguI GCTCTTC 1 cut(s) 642
LmnI GCTCC 4 cut(s) 215, 407, 480, 524
Lsp1109I GCAGC 6 cut(s) 384, 859, 967, 1005, 1118, 1138
LweI GCATC 3 cut(s) 392, 775, 983
MaeI CTAG 2 cut(s) 293, 636
MaeIII GTNAC 1 cut(s) 319
MalI GATC 1 cut(s) 970
MboI GATC 1 cut(s) 968
MboII GAAGA 6 cut(s) 27, 56, 296, 314, 349, 659
MhlI GDGCHC 1 cut(s) 212
MluCI AATT 2 cut(s) 47, 556
Mly113I GGCGCC 1 cut(s) 687
MlyI GAGTC 2 cut(s) 94, 1092
MmeI TCCRAC 1 cut(s) 903
Mph1103I ATGCAT 2 cut(s) 385, 790
MseI TTAA 3 cut(s) 470, 564, 737
MslI CAYNNNNRTG 2 cut(s) 39, 218
MspI CCGG 1 cut(s) 239
MspR9I CCNGG 2 cut(s) 642, 819
MvaI CCWGG 2 cut(s) 642, 819
MvnI CGCG 1 cut(s) 576
MwoI GCNNNNNNNGC 1 cut(s) 980
NarI GGCGCC 1 cut(s) 687
NdeI CATATG 1 cut(s) 868
NdeII GATC 1 cut(s) 968
NlaIII CATG 9 cut(s) 38, 223, 328, 353, 523, 1070, 1138, 1171, 1185
NlaIV GGNNCC 3 cut(s) 409, 688, 1146
NmuCI GTSAC 1 cut(s) 319
NsiI ATGCAT 2 cut(s) 385, 790
NspI RCATGY 2 cut(s) 38, 1185
PaeI GCATGC 1 cut(s) 1185
PaqCI CACCTGC 1 cut(s) 407
PceI AGGCCT 1 cut(s) 837
PciSI GCTCTTC 1 cut(s) 642
PcsI WCGNNNNNNNCGW 1 cut(s) 1203
PfeI GAWTC 4 cut(s) 76, 175, 747, 1210
PkrI GCNGC 6 cut(s) 399, 874, 982, 995, 1133, 1153
PleI GAGTC 2 cut(s) 93, 1092
PluTI GGCGCC 1 cut(s) 690
PpsI GAGTC 2 cut(s) 93, 1092
PpuMI RGGWCCY 1 cut(s) 815
PsiI TTATAA 1 cut(s) 915
Psp124BI GAGCTC 1 cut(s) 212
Psp5II RGGWCCY 1 cut(s) 815
Psp6I CCWGG 2 cut(s) 640, 817
PspFI CCCAGC 1 cut(s) 1154
PspGI CCWGG 2 cut(s) 640, 817
PspN4I GGNNCC 3 cut(s) 409, 688, 1146
PspPI GGNCC 3 cut(s) 462, 815, 1124
PspPPI RGGWCCY 1 cut(s) 815
PstNI CAGNNNCTG 1 cut(s) 977
RsaI GTAC 6 cut(s) 291, 629, 718, 770, 830, 1112
RsaNI GTAC 6 cut(s) 290, 628, 717, 769, 829, 1111
RseI CAYNNNNRTG 2 cut(s) 39, 218
SacI GAGCTC 1 cut(s) 212
SapI GCTCTTC 1 cut(s) 642
SaqAI TTAA 3 cut(s) 470, 564, 737
SatI GCNGC 6 cut(s) 398, 873, 981, 994, 1132, 1152
Sau3AI GATC 1 cut(s) 968
Sau96I GGNCC 3 cut(s) 462, 815, 1124
ScaI AGTACT 2 cut(s) 291, 629
SchI GAGTC 2 cut(s) 94, 1092
ScrFI CCNGG 2 cut(s) 642, 819
SduI GDGCHC 1 cut(s) 212
SfaNI GCATC 3 cut(s) 392, 775, 983
SfoI GGCGCC 1 cut(s) 688
SinI GGWCC 2 cut(s) 462, 815
SmiMI CAYNNNNRTG 2 cut(s) 39, 218
SmlI CTYRAG 2 cut(s) 728, 1010
SmoI CTYRAG 2 cut(s) 728, 1010
SphI GCATGC 1 cut(s) 1185
Sse9I AATT 2 cut(s) 47, 556
SseBI AGGCCT 1 cut(s) 837
SspDI GGCGCC 1 cut(s) 686
SspMI CTAG 2 cut(s) 293, 636
SstI GAGCTC 1 cut(s) 212
StuI AGGCCT 1 cut(s) 837
StyD4I CCNGG 2 cut(s) 640, 817
TaaI ACNGT 1 cut(s) 754
TasI AATT 2 cut(s) 47, 556
TatI WGTACW 6 cut(s) 289, 627, 716, 768, 828, 1110
TfiI GAWTC 4 cut(s) 76, 175, 747, 1210
Tru1I TTAA 3 cut(s) 470, 564, 737
Tru9I TTAA 3 cut(s) 470, 564, 737
TscAI CASTG 4 cut(s) 86, 265, 505, 757
TseFI GTSAC 1 cut(s) 319
TseI GCWGC 6 cut(s) 397, 872, 980, 993, 1131, 1151
Tsp45I GTSAC 1 cut(s) 319
TspDTI ATGAA 6 cut(s) 341, 350, 663, 1055, 1151, 1156
TspRI CASTG 4 cut(s) 86, 265, 505, 757
VpaK11BI GGWCC 2 cut(s) 462, 815
XapI RAATTY 1 cut(s) 47
XceI RCATGY 2 cut(s) 38, 1185
XcmI CCANNNNNNNNNTGG 1 cut(s) 472
XspI CTAG 2 cut(s) 293, 636
ZrmI AGTACT 2 cut(s) 291, 629
Zsp2I ATGCAT 2 cut(s) 385, 790
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.