Prupe.7G241000_v2.0.a1

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0014630
Physical Location & Seq
Reverse (-)
20737305 .. 20739888
2584 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G241000.1

Sequence Viewer

Length: 1200 bp
ATGGGTAGAAGAAGATTGCAAGGCACTGAAAATGCAACCAACGGTGTTGTGTTATCTTGTTCTGTGATTAGGATCAATCGAAGTCCTGCATCTCACGCTGGTGGGTTGTTTGCAAGCGTTGGTCAAGCAGCAAGGGGGTTTGTTATTACACCAAATCCACAGAATCCTATAGATAAAAGCACAAAGCTTCTGAGTTCCACATACATGAAATATATGCCAACTCCGGATTTTGGTTTGCGGATTGGCAGGGTTGATGAGTTGGTGGAAGGAGAGGCATTGGACCTTGGAGAAGAAGAGCTGCTCAAGAACAACAAAAGGGGTGGTTTGAAATTGAAAATTAAGATTGGGAATGCATCATTGAGAAGGTTGTTCAGTGGAGCAATAGCAGGCGTGGTGTCGCGCGCTGCGGTTGCACCATTGGAGACAATAAGGACCCATTTGATGGCGGGGAGCTGTGGTCACTCCAGTTCTCAAGTATTTCAATCTATTATGGAGACTGATGGATGGCAAGGCTTATTCAGGGGTACTTTGGTCAATGTCATCCGGGTTGCCCCAAGCAAGGCTATTGAGTTATTCGCTTATGATACGGTTAATAAGCACTTGACTCGACCTGGGGAGGAGCTGAAAATCCCTATTCCCGCTTCATCAATCGCAGGAGCTGTTGCTGGATTTAGCTCAACCTTGTGTACATACCCTCTGGAATTGTTAAAAACACGATTAACCGTGCAGAGAGGAGTGTACCAAAACTTCTTTCACGCATTTTCTAAAATTGTCCAAGAGGAGGGACCTGCAGGACTGTATAGAGGCCTCACCCCGAGTTTAATTGGAGTAATTCCATATGCTGCCGCCAATTACTTTGCTTATGATGCACTCTCAAAAGCTTACAAGAACGCTTTCAAAAAGGAGGAAATCGGAAATATAACGACGCTCTTAATCGGGTCAGCAGCTGCTGCAATTTCAAGCAGTGCAACTTTCCCACTTGAGGTGGCTAGAAAGAAAATGCAGGTCGGGGCTCTGAATGGGAGACAATACAAGGACATACTTCATGCTCTTTCTAGCACACTTGAGAGTGAAGGAATTGCTGGTTTATACAGAGGGTTGGGGCCAAGCTACATGAAATTGGTCCCTGCTGCTGGAATATCCTTCATGTGCTACGAGGCATGCAAGCGGATACTGACTGAGAACGAGGAAGAAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

400

Amino Acids

42.97

Weight (kDa)

9.41

Isoelectric Point (pI)

45.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014630)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03510
malus_domestica MD02G1034100.v1.1 MD15G1174900.v1.1
prunus_persica Prupe.7G241000_v2.0.a1
pyrus_communis pycom02g02790 pycom15g15640
rosa_chinensis RchiOBHm_Chr2g0088721
rosa_laevigata RLG00000015979
rosa_multiflora Rmu_sc0006835.1_g000004
rosa_roxburghii Rroxscaffold_2G00152370
rosa_rugosa Rorug01G0486500 Rorug01G0486600
rosa_samantha Rh2AG041700 Rh2BG040400 Rh2CG041200 Rh2DG040800
rosa_wichuraiana Rw2G003270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 796, 994
AccB7I CCANNNNNTGG 1 cut(s) 442
AccII CGCG 2 cut(s) 400, 402
AccIII TCCGGA 1 cut(s) 223
AciI CCGC 6 cut(s) 238, 407, 446, 639, 846, 1168
AclWI GGATC 1 cut(s) 80
AfaI GTAC 3 cut(s) 526, 688, 740
AfiI CCNNNNNNNGG 6 cut(s) 230, 442, 559, 781, 982, 1133
AgsI TTSAA 5 cut(s) 328, 334, 482, 898, 960
AjnI CCWGG 1 cut(s) 610
AjuI GAANNNNNNNTTGG 2 cut(s) 735, 767
AleI CACNNNNGTG 1 cut(s) 99
AluBI AGCT 9 cut(s) 187, 298, 453, 622, 659, 675, 881, 947, 1110
AluI AGCT 9 cut(s) 187, 298, 453, 622, 659, 675, 881, 947, 1110
Alw26I GTCTC 3 cut(s) 416, 488, 1018
AlwI GGATC 1 cut(s) 80
AlwNI CAGNNNCTG 3 cut(s) 659, 947, 950
Ama87I CYCGRG 1 cut(s) 814
Aor13HI TCCGGA 1 cut(s) 223
AoxI GGCC 2 cut(s) 805, 1103
ApeKI GCWGC 8 cut(s) 128, 298, 404, 842, 944, 947, 950, 1130
Asp700I GAANNNNTTC 1 cut(s) 893
AspLEI GCGC 2 cut(s) 402, 404
AspS9I GGNCC 5 cut(s) 280, 432, 785, 1103, 1123
AsuC2I CCSGG 1 cut(s) 545
AsuHPI GGTGA 1 cut(s) 802
AvaI CYCGRG 1 cut(s) 814
AvaII GGWCC 4 cut(s) 280, 432, 785, 1123
BaeI ACNNNNGTAYC 2 cut(s) 516, 549
BanII GRGCYC 1 cut(s) 1015
BarI GAAGNNNNNNTAC 2 cut(s) 731, 763
BbvI GCAGC 8 cut(s) 140, 285, 391, 829, 934, 937, 956, 1117
BccI CCATC 3 cut(s) 436, 494, 498
BcgI CGANNNNNNTGC 2 cut(s) 587, 621
BciT130I CCWGG 1 cut(s) 612
BciVI GTATCC 1 cut(s) 1164
BcnI CCSGG 1 cut(s) 545
BcoDI GTCTC 3 cut(s) 416, 488, 1018
BfaI CTAG 2 cut(s) 990, 1056
BfmI CTRYAG 2 cut(s) 168, 789
BfuAI ACCTGC 2 cut(s) 796, 994
BfuI GTATCC 1 cut(s) 1164
BisI GCNGC 9 cut(s) 129, 299, 405, 843, 846, 945, 948, 951, 1131
BlsI GCNGC 9 cut(s) 130, 300, 406, 844, 847, 946, 949, 952, 1132
Bme1390I CCNGG 2 cut(s) 545, 612
Bme18I GGWCC 4 cut(s) 280, 432, 785, 1123
BmeT110I CYCGRG 1 cut(s) 814
BmgT120I GGNCC 5 cut(s) 280, 432, 785, 1103, 1123
BmiI GGNNCC 4 cut(s) 434, 786, 1104, 1125
BmrFI CCNGG 2 cut(s) 545, 612
BmsI GCATC 3 cut(s) 98, 362, 856
BpmI CTGGAG 1 cut(s) 448
BpuEI CTTGAG 4 cut(s) 287, 456, 1001, 1085
BpuMI CCSGG 1 cut(s) 545
BsaBI GATNNNNATC 1 cut(s) 71
BsaJI CCNNGG 2 cut(s) 283, 611
BsaWI WCCGGW 1 cut(s) 223
BsaXI ACNNNNNCTCC 2 cut(s) 442, 472
Bsc4I CCNNNNNNNGG 6 cut(s) 230, 442, 559, 781, 982, 1133
Bse1I ACTGG 1 cut(s) 465
Bse8I GATNNNNATC 1 cut(s) 71
BseAI TCCGGA 1 cut(s) 223
BseBI CCWGG 1 cut(s) 612
BseDI CCNNGG 2 cut(s) 283, 611
BseGI GGATG 2 cut(s) 509, 540
BseJI GATNNNNATC 1 cut(s) 71
BseLI CCNNNNNNNGG 6 cut(s) 230, 442, 559, 781, 982, 1133
BseMII CTCAG 2 cut(s) 182, 1170
BseNI ACTGG 1 cut(s) 465
BsePI GCGCGC 1 cut(s) 400
BseRI GAGGAG 3 cut(s) 632, 747, 794
BseXI GCAGC 8 cut(s) 140, 285, 391, 829, 934, 937, 956, 1117
BsgI GTGCAG 1 cut(s) 746
Bsh1236I CGCG 2 cut(s) 400, 402
BshFI GGCC 2 cut(s) 807, 1105
BsiHKCI CYCGRG 1 cut(s) 814
BsiSI CCGG 2 cut(s) 224, 544
BslFI GGGAC 2 cut(s) 798, 1109
BslI CCNNNNNNNGG 6 cut(s) 230, 442, 559, 781, 982, 1133
BsmAI GTCTC 3 cut(s) 416, 488, 1018
BsmFI GGGAC 2 cut(s) 798, 1109
BsmI GAATGC 1 cut(s) 355
BsnI GGCC 2 cut(s) 807, 1105
BsoBI CYCGRG 1 cut(s) 814
Bsp1286I GDGCHC 1 cut(s) 1015
Bsp13I TCCGGA 1 cut(s) 223
Bsp1407I TGTACA 1 cut(s) 686
Bsp143I GATC 1 cut(s) 72
BspACI CCGC 6 cut(s) 238, 407, 446, 639, 846, 1168
BspANI GGCC 2 cut(s) 807, 1105
BspCNI CTCAG 2 cut(s) 183, 1171
BspEI TCCGGA 1 cut(s) 223
BspFNI CGCG 2 cut(s) 400, 402
BspLI GGNNCC 4 cut(s) 434, 786, 1104, 1125
BspMAI CTGCAG 1 cut(s) 793
BspMI ACCTGC 2 cut(s) 796, 994
BspPI GGATC 1 cut(s) 80
BspQI GCTCTTC 1 cut(s) 288
BsrGI TGTACA 1 cut(s) 686
BsrI ACTGG 1 cut(s) 465
BssECI CCNNGG 2 cut(s) 283, 611
BssHII GCGCGC 1 cut(s) 400
BssMI GATC 1 cut(s) 72
BssT1I CCWWGG 1 cut(s) 283
Bst2UI CCWGG 1 cut(s) 612
Bst4CI ACNGT 4 cut(s) 44, 589, 724, 798
Bst6I CTCTTC 1 cut(s) 288
BstAPI GCANNNNNTGC 1 cut(s) 950
BstAUI TGTACA 1 cut(s) 686
BstC8I GCNNGC 5 cut(s) 115, 388, 402, 1162, 1166
BstDEI CTNAG 2 cut(s) 191, 1179
BstF5I GGATG 2 cut(s) 509, 540
BstFNI CGCG 2 cut(s) 400, 402
BstHHI GCGC 2 cut(s) 402, 404
BstKTI GATC 1 cut(s) 75
BstMAI GTCTC 3 cut(s) 416, 488, 1018
BstMBI GATC 1 cut(s) 72
BstMWI GCNNNNNNNGC 4 cut(s) 95, 410, 866, 950
BstNI CCWGG 1 cut(s) 612
BstNSI RCATGY 1 cut(s) 1164
BstSCI CCNGG 2 cut(s) 543, 610
BstSFI CTRYAG 2 cut(s) 168, 789
BstUI CGCG 2 cut(s) 400, 402
BstV1I GCAGC 8 cut(s) 140, 285, 391, 829, 934, 937, 956, 1117
BsuI GTATCC 1 cut(s) 1164
BsuRI GGCC 2 cut(s) 807, 1105
BtsCI GGATG 2 cut(s) 509, 540
BtsI GCAGTG 1 cut(s) 970
BtsIMutI CAGTG 3 cut(s) 24, 379, 970
BveI ACCTGC 2 cut(s) 796, 994
Cac8I GCNNGC 5 cut(s) 115, 388, 402, 1162, 1166
CaiI CAGNNNCTG 3 cut(s) 659, 947, 950
CfoI GCGC 2 cut(s) 402, 404
Cfr13I GGNCC 5 cut(s) 280, 432, 785, 1103, 1123
CseI GACGC 1 cut(s) 934
Csp6I GTAC 3 cut(s) 525, 687, 739
CspCI CAANNNNNGTGG 2 cut(s) 301, 336
CviAII CATG 5 cut(s) 205, 1046, 1114, 1147, 1161
CviQI GTAC 3 cut(s) 525, 687, 739
DdeI CTNAG 2 cut(s) 191, 1179
DpnI GATC 1 cut(s) 74
DpnII GATC 1 cut(s) 72
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
Eco130I CCWWGG 1 cut(s) 283
Eco147I AGGCCT 1 cut(s) 807
Eco24I GRGCYC 1 cut(s) 1015
Eco47I GGWCC 4 cut(s) 280, 432, 785, 1123
Eco88I CYCGRG 1 cut(s) 814
EcoO109I RGGNCCY 2 cut(s) 432, 785
EcoRII CCWGG 1 cut(s) 610
EcoT14I CCWWGG 1 cut(s) 283
EcoT22I ATGCAT 1 cut(s) 355
EcoT38I GRGCYC 1 cut(s) 1015
ErhI CCWWGG 1 cut(s) 283
FaeI CATG 5 cut(s) 208, 1049, 1117, 1150, 1164
FaqI GGGAC 2 cut(s) 798, 1109
FatI CATG 5 cut(s) 204, 1045, 1113, 1146, 1160
FauI CCCGC 2 cut(s) 439, 646
FauNDI CATATG 1 cut(s) 838
Fnu4HI GCNGC 9 cut(s) 129, 299, 405, 843, 846, 945, 948, 951, 1131
FokI GGATG 2 cut(s) 516, 527
FriOI GRGCYC 1 cut(s) 1015
Fsp4HI GCNGC 9 cut(s) 129, 299, 405, 843, 846, 945, 948, 951, 1131
FspBI CTAG 2 cut(s) 990, 1056
GlaI GCGC 2 cut(s) 401, 403
GluI GCNGC 9 cut(s) 129, 299, 405, 843, 846, 945, 948, 951, 1131
GsuI CTGGAG 1 cut(s) 448
HaeIII GGCC 2 cut(s) 807, 1105
HapII CCGG 2 cut(s) 224, 544
HgaI GACGC 1 cut(s) 934
HhaI GCGC 2 cut(s) 402, 404
Hin1II CATG 5 cut(s) 208, 1049, 1117, 1150, 1164
Hin6I GCGC 2 cut(s) 400, 402
HinP1I GCGC 2 cut(s) 400, 402
HindIII AAGCTT 2 cut(s) 185, 879
HinfI GANTC 2 cut(s) 163, 604
HpaII CCGG 2 cut(s) 224, 544
HphI GGTGA 1 cut(s) 802
Hpy166II GTNNAC 2 cut(s) 687, 739
Hpy188I TCNGA 3 cut(s) 192, 914, 1017
Hpy188III TCNNGA 3 cut(s) 224, 304, 698
Hpy8I GTNNAC 2 cut(s) 687, 739
Hpy99I CGWCG 1 cut(s) 928
HpyAV CCTTC 4 cut(s) 260, 357, 1067, 1153
HpyCH4III ACNGT 4 cut(s) 44, 589, 724, 798
HpyF10VI GCNNNNNNNGC 4 cut(s) 95, 410, 866, 950
HpyF3I CTNAG 2 cut(s) 191, 1179
Hsp92II CATG 5 cut(s) 208, 1049, 1117, 1150, 1164
HspAI GCGC 2 cut(s) 400, 402
Kpn2I TCCGGA 1 cut(s) 223
Kzo9I GATC 1 cut(s) 72
LguI GCTCTTC 1 cut(s) 288
LmnI GCTCC 4 cut(s) 377, 450, 619, 656
Lsp1109I GCAGC 8 cut(s) 140, 285, 391, 829, 934, 937, 956, 1117
LweI GCATC 3 cut(s) 98, 362, 856
MaeI CTAG 2 cut(s) 990, 1056
MaeIII GTNAC 1 cut(s) 458
MalI GATC 1 cut(s) 74
MboI GATC 1 cut(s) 72
MboII GAAGA 4 cut(s) 21, 24, 302, 305
MhlI GDGCHC 1 cut(s) 1015
MlyI GAGTC 1 cut(s) 598
Mph1103I ATGCAT 1 cut(s) 355
MroI TCCGGA 1 cut(s) 223
MroXI GAANNNNTTC 1 cut(s) 893
MseI TTAA 6 cut(s) 339, 591, 707, 719, 821, 932
MslI CAYNNNNRTG 2 cut(s) 99, 203
MspA1I CMGCKG 1 cut(s) 947
MspI CCGG 2 cut(s) 224, 544
MspR9I CCNGG 2 cut(s) 545, 612
Mva1269I GAATGC 1 cut(s) 355
MvaI CCWGG 1 cut(s) 612
MvnI CGCG 2 cut(s) 400, 402
MwoI GCNNNNNNNGC 4 cut(s) 95, 410, 866, 950
NciI CCSGG 1 cut(s) 545
NdeI CATATG 1 cut(s) 838
NdeII GATC 1 cut(s) 72
NlaIII CATG 5 cut(s) 208, 1049, 1117, 1150, 1164
NlaIV GGNNCC 4 cut(s) 434, 786, 1104, 1125
NmuCI GTSAC 1 cut(s) 458
NsiI ATGCAT 1 cut(s) 355
NspI RCATGY 1 cut(s) 1164
OliI CACNNNNGTG 1 cut(s) 99
PaeI GCATGC 1 cut(s) 1164
PauI GCGCGC 1 cut(s) 400
PceI AGGCCT 1 cut(s) 807
PciSI GCTCTTC 1 cut(s) 288
PctI GAATGC 1 cut(s) 355
PdmI GAANNNNTTC 1 cut(s) 893
PfeI GAWTC 1 cut(s) 163
PflMI CCANNNNNTGG 1 cut(s) 442
PkrI GCNGC 9 cut(s) 130, 300, 406, 844, 847, 946, 949, 952, 1132
PleI GAGTC 1 cut(s) 598
PpsI GAGTC 1 cut(s) 598
PpuMI RGGWCCY 2 cut(s) 432, 785
Psp5II RGGWCCY 2 cut(s) 432, 785
Psp6I CCWGG 1 cut(s) 610
PspGI CCWGG 1 cut(s) 610
PspN4I GGNNCC 4 cut(s) 434, 786, 1104, 1125
PspPI GGNCC 5 cut(s) 280, 432, 785, 1103, 1123
PspPPI RGGWCCY 2 cut(s) 432, 785
PstI CTGCAG 1 cut(s) 793
PstNI CAGNNNCTG 3 cut(s) 659, 947, 950
PteI GCGCGC 1 cut(s) 400
PvuII CAGCTG 1 cut(s) 947
RsaI GTAC 3 cut(s) 526, 688, 740
RsaNI GTAC 3 cut(s) 525, 687, 739
RseI CAYNNNNRTG 2 cut(s) 99, 203
SapI GCTCTTC 1 cut(s) 288
SaqAI TTAA 6 cut(s) 339, 591, 707, 719, 821, 932
SatI GCNGC 9 cut(s) 129, 299, 405, 843, 846, 945, 948, 951, 1131
Sau3AI GATC 1 cut(s) 72
Sau96I GGNCC 5 cut(s) 280, 432, 785, 1103, 1123
SbfI CCTGCAGG 1 cut(s) 793
SchI GAGTC 1 cut(s) 598
ScrFI CCNGG 2 cut(s) 545, 612
SdaI CCTGCAGG 1 cut(s) 793
SduI GDGCHC 1 cut(s) 1015
SfaNI GCATC 3 cut(s) 98, 362, 856
SfcI CTRYAG 2 cut(s) 168, 789
SinI GGWCC 4 cut(s) 280, 432, 785, 1123
SmiMI CAYNNNNRTG 2 cut(s) 99, 203
SmlI CTYRAG 4 cut(s) 302, 471, 980, 1064
SmoI CTYRAG 4 cut(s) 302, 471, 980, 1064
SphI GCATGC 1 cut(s) 1164
Sse8387I CCTGCAGG 1 cut(s) 793
SseBI AGGCCT 1 cut(s) 807
SsiI CCGC 6 cut(s) 238, 407, 446, 639, 846, 1168
SspMI CTAG 2 cut(s) 990, 1056
StuI AGGCCT 1 cut(s) 807
StyD4I CCNGG 2 cut(s) 543, 610
StyI CCWWGG 1 cut(s) 283
TaaI ACNGT 4 cut(s) 44, 589, 724, 798
TaqI TCGA 2 cut(s) 79, 607
TatI WGTACW 1 cut(s) 686
TauI GCSGC 1 cut(s) 848
TfiI GAWTC 1 cut(s) 163
Tru1I TTAA 6 cut(s) 339, 591, 707, 719, 821, 932
Tru9I TTAA 6 cut(s) 339, 591, 707, 719, 821, 932
TscAI CASTG 3 cut(s) 31, 379, 970
TseFI GTSAC 1 cut(s) 458
TseI GCWGC 8 cut(s) 128, 298, 404, 842, 944, 947, 950, 1130
Tsp45I GTSAC 1 cut(s) 458
TspDTI ATGAA 5 cut(s) 221, 633, 1034, 1130, 1135
TspRI CASTG 3 cut(s) 31, 379, 970
Van91I CCANNNNNTGG 1 cut(s) 442
VpaK11BI GGWCC 4 cut(s) 280, 432, 785, 1123
XceI RCATGY 1 cut(s) 1164
XmnI GAANNNNTTC 1 cut(s) 893
XspI CTAG 2 cut(s) 990, 1056
Zsp2I ATGCAT 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.