Rorug01G0486500

Adenine nucleotide transporter BT1, chloroplastic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0014630
Physical Location & Seq
Forward (+)
57247742 .. 57250625
2884 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0486500.1

Sequence Viewer

Length: 879 bp
ATGAGTTTCAGAGATCTGGAGTCTGGTCTGCCTCCGCAACGACAAAGACAATCCTCGCTTTTCTTGAAGAAGAATTCTTCGTCCTCAAAGAATTACTATGAGAAGAACAAGGAGGAGGCGGAGGAGGAGCCGTCGCGGGCGGTGGCCGCTGGGATTTTCCAATTGCAAACCGCCGTCTCCTCCTTTTACCGCCTCGTCAATTCCCTCGGCACCCCTAAAGACACCCTTCAACTCCGTGACAACCTGCATAAGACAAGGACACATATTGGGCAGTTGGTGAAAGATATCTCAGCTAAACTTAAGCAAGCTAGTGATACTGATCACCATGCTGAAGTTAGTGTTGTCAAGAAGATTGCTGATGCTAAGCTTGCAAAGAATTTCCAGGCAGCTCTTAAAGACTATCAGAAGGCCCAAAGGCTTGCTGCTGAAAGGGAGACTTCATATGCTCCTTTTGTTCCCAAACAAGTTCTCCCTTCCAGTTATTCTCCCCACGAACAAGAGATGAGTTCAGCTAGAAGTCCCAAGCAGCAATCGCTCCTTGTAGAATCAGAAAGACAAGCAATTTTGCTATCAGACAATGAGATTGCATTCAATGAAGCCATTATTGAGGAAAGGGAGCAAGGGATCCAAGAAATTCAGCAACAAATTAGTGAGGTTAATGAGATTTTCAAAGATCTAGCTGTCCTAGTTCAAGATCAAGGAGCTGTAATAGATGATTTTAGTTCCAATATTGACAACGCTCATTCTGCAACTGCACAAGCTGCTTCCCAACTTTCAAAAGCATCCAAGCTCCAAAAATCAAATTCATCCCTGACCTGTTTGCTGCTGGTGATATTTGGAATAGTCCTCATCATTGTCCTTATAGTTGTTGTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

292

Amino Acids

32.39

Weight (kDa)

6.34

Isoelectric Point (pI)

58.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Syntaxin_2 PF14523 46 - 170 2.6e-32 Syntaxin-like protein
SNARE PF05739 236 - 287 1.4e-14 SNARE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014630)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03510
malus_domestica MD02G1034100.v1.1 MD15G1174900.v1.1
prunus_persica Prupe.7G241000_v2.0.a1
pyrus_communis pycom02g02790 pycom15g15640
rosa_chinensis RchiOBHm_Chr2g0088721
rosa_laevigata RLG00000015979
rosa_multiflora Rmu_sc0006835.1_g000004
rosa_roxburghii Rroxscaffold_2G00152370
rosa_rugosa Rorug01G0486500 Rorug01G0486600
rosa_samantha Rh2AG041700 Rh2BG040400 Rh2CG041200 Rh2DG040800
rosa_wichuraiana Rw2G003270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 252
AccB1I GGYRCC 1 cut(s) 209
AccII CGCG 1 cut(s) 136
AciI CCGC 7 cut(s) 35, 119, 136, 140, 147, 171, 190
AclWI GGATC 2 cut(s) 619, 632
AcoI YGGCCR 1 cut(s) 144
AcsI RAATTY 4 cut(s) 73, 376, 633, 802
AcuI CTGAAG 1 cut(s) 351
AflII CTTAAG 1 cut(s) 299
AgsI TTSAA 6 cut(s) 67, 230, 592, 670, 692, 777
AjnI CCWGG 1 cut(s) 381
AluBI AGCT 9 cut(s) 293, 308, 367, 389, 512, 680, 704, 761, 790
AluI AGCT 9 cut(s) 293, 308, 367, 389, 512, 680, 704, 761, 790
Alw26I GTCTC 2 cut(s) 181, 428
AlwI GGATC 2 cut(s) 619, 632
AoxI GGCC 2 cut(s) 144, 408
ApeKI GCWGC 5 cut(s) 386, 422, 526, 761, 823
ApoI RAATTY 4 cut(s) 73, 376, 633, 802
AspS9I GGNCC 1 cut(s) 409
AsuHPI GGTGA 3 cut(s) 289, 314, 841
BamHI GGATCC 1 cut(s) 624
BanI GGYRCC 1 cut(s) 209
BbvI GCAGC 5 cut(s) 398, 409, 538, 748, 810
BceAI ACGGC 2 cut(s) 115, 158
BciT130I CCWGG 1 cut(s) 383
BclI TGATCA 1 cut(s) 319
BcoDI GTCTC 2 cut(s) 181, 428
BfaI CTAG 4 cut(s) 309, 513, 677, 686
BfrI CTTAAG 1 cut(s) 299
BfuAI ACCTGC 1 cut(s) 252
BglII AGATCT 2 cut(s) 13, 673
BisI GCNGC 6 cut(s) 147, 387, 423, 527, 762, 824
BlpI GCTNAGC 1 cut(s) 363
BlsI GCNGC 6 cut(s) 148, 388, 424, 528, 763, 825
Bme1390I CCNGG 1 cut(s) 383
BmgT120I GGNCC 1 cut(s) 409
BmiI GGNNCC 3 cut(s) 129, 211, 626
BmrFI CCNGG 1 cut(s) 383
BmsI GCATC 2 cut(s) 349, 791
BpmI CTGGAG 1 cut(s) 38
Bpu1102I GCTNAGC 1 cut(s) 363
BsaBI GATNNNNATC 1 cut(s) 318
BsaJI CCNNGG 1 cut(s) 205
BsaXI ACNNNNNCTCC 4 cut(s) 116, 146, 453, 483
Bse1I ACTGG 1 cut(s) 477
Bse8I GATNNNNATC 1 cut(s) 318
BseBI CCWGG 1 cut(s) 383
BseDI CCNNGG 1 cut(s) 205
BseGI GGATG 2 cut(s) 782, 806
BseJI GATNNNNATC 1 cut(s) 318
BseMII CTCAG 1 cut(s) 303
BseNI ACTGG 1 cut(s) 477
BseRI GAGGAG 4 cut(s) 128, 137, 140, 169
BseXI GCAGC 5 cut(s) 398, 409, 538, 748, 810
BseYI CCCAGC 1 cut(s) 149
BsgI GTGCAG 1 cut(s) 738
Bsh1236I CGCG 1 cut(s) 136
BshFI GGCC 2 cut(s) 146, 410
BshNI GGYRCC 1 cut(s) 209
BslFI GGGAC 1 cut(s) 504
BsmAI GTCTC 2 cut(s) 181, 428
BsmBI CGTCTC 1 cut(s) 181
BsmFI GGGAC 1 cut(s) 504
BsmI GAATGC 1 cut(s) 587
BsnI GGCC 2 cut(s) 146, 410
Bsp143I GATC 5 cut(s) 13, 319, 624, 673, 694
Bsp1720I GCTNAGC 1 cut(s) 363
BspACI CCGC 7 cut(s) 35, 119, 136, 140, 147, 171, 190
BspANI GGCC 2 cut(s) 146, 410
BspCNI CTCAG 1 cut(s) 302
BspFNI CGCG 1 cut(s) 136
BspLI GGNNCC 3 cut(s) 129, 211, 626
BspMI ACCTGC 1 cut(s) 252
BspPI GGATC 2 cut(s) 619, 632
BspT107I GGYRCC 1 cut(s) 209
BspTI CTTAAG 1 cut(s) 299
BsrI ACTGG 1 cut(s) 477
BssECI CCNNGG 1 cut(s) 205
BssMI GATC 5 cut(s) 13, 319, 624, 673, 694
Bst2UI CCWGG 1 cut(s) 383
BstAFI CTTAAG 1 cut(s) 299
BstAPI GCANNNNNTGC 1 cut(s) 761
BstC8I GCNNGC 4 cut(s) 138, 306, 369, 420
BstDEI CTNAG 2 cut(s) 289, 363
BstF5I GGATG 2 cut(s) 782, 806
BstFNI CGCG 1 cut(s) 136
BstKTI GATC 5 cut(s) 16, 322, 627, 676, 697
BstMAI GTCTC 2 cut(s) 181, 428
BstMBI GATC 5 cut(s) 13, 319, 624, 673, 694
BstMWI GCNNNNNNNGC 5 cut(s) 146, 368, 532, 746, 761
BstNI CCWGG 1 cut(s) 383
BstSCI CCNGG 1 cut(s) 381
BstUI CGCG 1 cut(s) 136
BstV1I GCAGC 5 cut(s) 398, 409, 538, 748, 810
BstX2I RGATCY 3 cut(s) 13, 624, 673
BstYI RGATCY 3 cut(s) 13, 624, 673
BsuRI GGCC 2 cut(s) 146, 410
BtsCI GGATG 2 cut(s) 782, 806
BveI ACCTGC 1 cut(s) 252
Cac8I GCNNGC 4 cut(s) 138, 306, 369, 420
Cfr13I GGNCC 1 cut(s) 409
CviAII CATG 1 cut(s) 326
DdeI CTNAG 2 cut(s) 289, 363
DpnI GATC 5 cut(s) 15, 321, 626, 675, 696
DpnII GATC 5 cut(s) 13, 319, 624, 673, 694
EaeI YGGCCR 1 cut(s) 144
EciI GGCGGA 1 cut(s) 134
Eco32I GATATC 1 cut(s) 286
Eco57I CTGAAG 1 cut(s) 351
EcoRI GAATTC 1 cut(s) 73
EcoRII CCWGG 1 cut(s) 381
EcoRV GATATC 1 cut(s) 286
Esp3I CGTCTC 1 cut(s) 181
FaeI CATG 1 cut(s) 329
FaiI YATR 7 cut(s) 99, 249, 264, 327, 442, 444, 863
FalI AAGNNNNNCTT 4 cut(s) 210, 242, 421, 453
FaqI GGGAC 1 cut(s) 504
FatI CATG 1 cut(s) 325
FauI CCCGC 1 cut(s) 129
FauNDI CATATG 1 cut(s) 442
FbaI TGATCA 1 cut(s) 319
Fnu4HI GCNGC 6 cut(s) 147, 387, 423, 527, 762, 824
FokI GGATG 2 cut(s) 769, 793
Fsp4HI GCNGC 6 cut(s) 147, 387, 423, 527, 762, 824
FspBI CTAG 4 cut(s) 309, 513, 677, 686
GluI GCNGC 6 cut(s) 147, 387, 423, 527, 762, 824
GsaI CCCAGC 1 cut(s) 153
GsuI CTGGAG 1 cut(s) 38
HaeIII GGCC 2 cut(s) 146, 410
Hin1II CATG 1 cut(s) 329
HindIII AAGCTT 1 cut(s) 365
HinfI GANTC 2 cut(s) 20, 545
HphI GGTGA 3 cut(s) 289, 314, 841
Hpy188I TCNGA 4 cut(s) 11, 405, 550, 574
Hpy188III TCNNGA 4 cut(s) 17, 64, 346, 692
Hpy99I CGWCG 1 cut(s) 136
HpyAV CCTTC 3 cut(s) 236, 400, 483
HpyCH4V TGCA 6 cut(s) 166, 247, 371, 587, 749, 755
HpyF10VI GCNNNNNNNGC 5 cut(s) 146, 368, 532, 746, 761
HpyF3I CTNAG 2 cut(s) 289, 363
Hsp92II CATG 1 cut(s) 329
Ksp22I TGATCA 1 cut(s) 319
Kzo9I GATC 5 cut(s) 13, 319, 624, 673, 694
LmnI GCTCC 6 cut(s) 127, 451, 540, 616, 701, 795
Lsp1109I GCAGC 5 cut(s) 398, 409, 538, 748, 810
LweI GCATC 2 cut(s) 349, 791
MaeI CTAG 4 cut(s) 309, 513, 677, 686
MaeIII GTNAC 1 cut(s) 236
MalI GATC 5 cut(s) 15, 321, 626, 675, 696
MboI GATC 5 cut(s) 13, 319, 624, 673, 694
MboII GAAGA 5 cut(s) 69, 79, 82, 115, 361
MfeI CAATTG 1 cut(s) 161
MflI RGATCY 3 cut(s) 13, 624, 673
MluCI AATT 9 cut(s) 73, 91, 161, 199, 376, 561, 633, 645, 802
MlyI GAGTC 1 cut(s) 29
MseI TTAA 3 cut(s) 300, 393, 657
MspA1I CMGCKG 1 cut(s) 149
MspCI CTTAAG 1 cut(s) 299
MspR9I CCNGG 1 cut(s) 383
MunI CAATTG 1 cut(s) 161
Mva1269I GAATGC 1 cut(s) 587
MvaI CCWGG 1 cut(s) 383
MvnI CGCG 1 cut(s) 136
MwoI GCNNNNNNNGC 5 cut(s) 146, 368, 532, 746, 761
NdeI CATATG 1 cut(s) 442
NdeII GATC 5 cut(s) 13, 319, 624, 673, 694
NlaIII CATG 1 cut(s) 329
NlaIV GGNNCC 3 cut(s) 129, 211, 626
NmeAIII GCCGAG 1 cut(s) 186
NmuCI GTSAC 1 cut(s) 236
PctI GAATGC 1 cut(s) 587
PfeI GAWTC 1 cut(s) 545
PkrI GCNGC 6 cut(s) 148, 388, 424, 528, 763, 825
PleI GAGTC 1 cut(s) 28
PpsI GAGTC 1 cut(s) 28
Psp6I CCWGG 1 cut(s) 381
PspFI CCCAGC 1 cut(s) 149
PspGI CCWGG 1 cut(s) 381
PspN4I GGNNCC 3 cut(s) 129, 211, 626
PspPI GGNCC 1 cut(s) 409
PsuI RGATCY 3 cut(s) 13, 624, 673
SaqAI TTAA 3 cut(s) 300, 393, 657
SatI GCNGC 6 cut(s) 147, 387, 423, 527, 762, 824
Sau3AI GATC 5 cut(s) 13, 319, 624, 673, 694
Sau96I GGNCC 1 cut(s) 409
SchI GAGTC 1 cut(s) 29
ScrFI CCNGG 1 cut(s) 383
SfaNI GCATC 2 cut(s) 349, 791
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
Sse9I AATT 9 cut(s) 73, 91, 161, 199, 376, 561, 633, 645, 802
SsiI CCGC 7 cut(s) 35, 119, 136, 140, 147, 171, 190
SspI AATATT 1 cut(s) 730
SspMI CTAG 4 cut(s) 309, 513, 677, 686
StyD4I CCNGG 1 cut(s) 381
TasI AATT 9 cut(s) 73, 91, 161, 199, 376, 561, 633, 645, 802
TauI GCSGC 1 cut(s) 149
TfiI GAWTC 1 cut(s) 545
Tru1I TTAA 3 cut(s) 300, 393, 657
Tru9I TTAA 3 cut(s) 300, 393, 657
TseFI GTSAC 1 cut(s) 236
TseI GCWGC 5 cut(s) 386, 422, 526, 761, 823
Tsp45I GTSAC 1 cut(s) 236
TspDTI ATGAA 3 cut(s) 429, 609, 795
TspGWI ACGGA 1 cut(s) 224
Vha464I CTTAAG 1 cut(s) 299
XapI RAATTY 4 cut(s) 73, 376, 633, 802
XspI CTAG 4 cut(s) 309, 513, 677, 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.