FvH4_1g03980

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0012336
Physical Location & Seq
Reverse (-)
2115065 .. 2118919
3855 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g03980.t1

Sequence Viewer

Length: 1260 bp
ATGGCTGCAGTCGCCGCCGAGACCAAGCCCATCGATGCCGTGCCGGAGGAGACCTGCTCGTCCAAGCTCGCCGCCTCCAAACTCGGCGATGGGCTCCGGCCGTACTACCTCCAACACATTCACGAGCTCCAGCTCCAGGTCCGCCAGAAGACCCACAATCTCAATCGACTCGAGGCTCAGCGTAACGAGCTCAATTCCAGAGTGAGAATGCTCAGGGAAGAACTGCAGCTTCTTCAGGAGCCTGGGTCCTATGTCGGTGAGGTTGTCAACGTCATGGGAAAGAACAAGGTTTTGGTTAAGGTTCATCCGGAAGGGAAATATGTGGTTGATATCGATAAGAACATTGATATTACAAAGATCACACCATCTACACGTGTGGCTCTCCGCAATGACAGCTATGTTCTTCATTTAGTACTGCCAAGCAAAGTTGATCCTCTTGTCAATCTGATGAAAGTGGAGAAGGTTCCAGATTCTACATATGATATGATTGGTGGTCTGGATCAGCAGATTAAAGAAATCAAAGAGGTCATTGAACTTCCAATTAAACATCCTGAATTGTTCGAAAGTCTTGGAATAGCTCAGCCAAAGGGAGTCCTGCTTTATGGTCCCCCCGGCACTGGAAAAACCTTGTTGGCTAGGGCTGTGGCTCATCATACCGACTGTACTTTCATCAGGGTCTCTGGTTCAGAGTTGGTTCAGAAATACATTGGGGAAGGTTCCCGAATGGTTAGAGAACTTTTCGTCATGGCCAGGGAACATGCTCCATCTATCATCTTTATGGATGAAATCGATAGTATTGGATCTGCTCGTATGGAATCTGGCAGTGGCAATGGTGACAGTGAGGTGCAGCGGACTATGCTTGAGCTTCTTAATCAACTGGATGGATTTGAGGCCTCAAACAAAATCAAGGTTTTGATGGCTACAAATCGTATTGATATTTTGGATCAAGCCCTGCTGAGGCCAGGACGCATAGACAGGAAAATTGAATTTCCCAACCCTAACGAAGAGTCTCGTTGGGACATCCTGAAAATCCATTCAAGAAGAATGAATTTAATGCGTGGAATAGACCTGAAGAAGATTGCCGAGAAAATGAATGGCGCATCTGGTGCTGAGTTGAAGGCTGTATGTACTGAAGCAGGAATGTTTGCACTGAGGGAGAGGAGAGTGCATGTAACCCAAGAAGACTTTGAGATGGCAGTTGCCAAGGTTATGAAGAAGGAGACTGAGAAGAACATGTCCCTGCGCAAGCTGTGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

420

Amino Acids

47.2

Weight (kDa)

8.52

Isoelectric Point (pI)

43.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prot_ATP_ID_OB_C PF16450 85 - 140 9.8e-13 Proteasomal ATPase OB C-terminal domain
AAA PF00004 198 - 331 5.4e-44 ATPase family associated with various cellular activities (AAA)
AAA_2 PF07724 198 - 291 1e-05 AAA domain (Cdc48 subfamily)
AAA_lid_PRS2_C PF23902 336 - 405 9.9e-06 PRS2 AAA+ lid C-terminal domain
AAA_lid_3 PF17862 355 - 397 1.5e-14 AAA+ lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012336)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19990 AT5G19990 AT5G19990 AT5G20000
fragaria_vesca FvH4_1g03980
malus_domestica MD02G1226600.v1.1 MD07G1087400.v1.1
prunus_persica Prupe.7G237100_v2.0.a1
pyrus_communis pycom02g19560
rosa_chinensis RchiOBHm_Chr2g0089461
rosa_laevigata RLG00000016031
rosa_multiflora Rmu_sc0000197.1_g000006
rosa_roxburghii Rroxscaffold_2G00151910 Rroxscaffold_6G00403280
rosa_rugosa Rorug02G0001000
rosa_samantha Rh2AG046200 Rh2CG046600 Rh2DG046200
rosa_wichuraiana Rw2G003640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 58
Acc16I TGCGCA 1 cut(s) 1244
Acc36I ACCTGC 1 cut(s) 62
AccIII TCCGGA 1 cut(s) 307
AciI CCGC 5 cut(s) 15, 72, 142, 385, 850
AclWI GGATC 4 cut(s) 425, 507, 808, 951
AcoI YGGCCR 2 cut(s) 98, 747
AcsI RAATTY 2 cut(s) 986, 1048
AcuI CTGAAG 3 cut(s) 218, 1091, 1152
AcvI CACGTG 1 cut(s) 374
AfaI GTAC 4 cut(s) 104, 414, 664, 1129
AfiI CCNNNNNNNGG 3 cut(s) 136, 617, 957
AflIII ACRYGT 3 cut(s) 371, 373, 1233
AgsI TTSAA 4 cut(s) 533, 986, 1038, 1117
AjnI CCWGG 4 cut(s) 135, 241, 749, 961
AjuI GAANNNNNNNTTGG 2 cut(s) 275, 307
AluBI AGCT 9 cut(s) 67, 127, 133, 190, 229, 396, 578, 865, 1249
AluI AGCT 9 cut(s) 67, 127, 133, 190, 229, 396, 578, 865, 1249
Alw21I GWGCWC 2 cut(s) 129, 192
Alw26I GTCTC 5 cut(s) 14, 44, 682, 1014, 1214
AlwI GGATC 4 cut(s) 425, 507, 808, 951
Ama87I CYCGRG 1 cut(s) 170
Aor13HI TCCGGA 1 cut(s) 307
AoxI GGCC 4 cut(s) 98, 747, 891, 959
ApeKI GCWGC 3 cut(s) 5, 226, 847
ApoI RAATTY 2 cut(s) 986, 1048
AspLEI GCGC 2 cut(s) 1100, 1245
AspS9I GGNCC 3 cut(s) 139, 246, 605
AsuC2I CCSGG 1 cut(s) 612
AsuHPI GGTGA 2 cut(s) 269, 845
AsuII TTCGAA 1 cut(s) 561
AvaI CYCGRG 1 cut(s) 170
AvaII GGWCC 3 cut(s) 139, 246, 605
BalI TGGCCA 1 cut(s) 749
BanII GRGCYC 3 cut(s) 96, 129, 192
BauI CACGAG 1 cut(s) 122
BbrPI CACGTG 1 cut(s) 374
BbsI GAAGAC 2 cut(s) 155, 1188
Bbv12I GWGCWC 2 cut(s) 129, 192
BbvCI CCTCAGC 1 cut(s) 956
BbvI GCAGC 2 cut(s) 238, 859
BccI CCATC 7 cut(s) 38, 83, 373, 772, 875, 910, 1186
BceAI ACGGC 2 cut(s) 23, 85
BciT130I CCWGG 4 cut(s) 137, 243, 751, 963
BcnI CCSGG 1 cut(s) 612
BcoDI GTCTC 5 cut(s) 14, 44, 682, 1014, 1214
BfaI CTAG 1 cut(s) 636
BfmI CTRYAG 2 cut(s) 6, 224
BfuAI ACCTGC 1 cut(s) 62
BisI GCNGC 5 cut(s) 6, 15, 72, 227, 848
BlpI GCTNAGC 2 cut(s) 177, 579
BlsI GCNGC 5 cut(s) 7, 16, 73, 228, 849
BmcAI AGTACT 1 cut(s) 414
Bme1390I CCNGG 5 cut(s) 137, 243, 612, 751, 963
Bme18I GGWCC 3 cut(s) 139, 246, 605
BmeT110I CYCGRG 1 cut(s) 170
BmgT120I GGNCC 3 cut(s) 139, 246, 605
BmiI GGNNCC 6 cut(s) 95, 240, 247, 465, 607, 718
BmrFI CCNGG 5 cut(s) 137, 243, 612, 751, 963
BmsI GCATC 2 cut(s) 25, 1109
BpiI GAAGAC 2 cut(s) 155, 1188
BplI GAGNNNNNCTC 2 cut(s) 41, 73
BpmI CTGGAG 2 cut(s) 113, 119
Bpu10I CCTNAGC 2 cut(s) 212, 956
Bpu1102I GCTNAGC 2 cut(s) 177, 579
Bpu14I TTCGAA 1 cut(s) 561
BpuEI CTTGAG 1 cut(s) 881
BpuMI CCSGG 1 cut(s) 612
Bsa29I ATCGAT 3 cut(s) 33, 333, 789
BsaAI YACGTR 1 cut(s) 374
BsaI GGTCTC 3 cut(s) 14, 44, 682
BsaJI CCNNGG 4 cut(s) 242, 610, 750, 1203
BsaWI WCCGGW 1 cut(s) 307
BsaXI ACNNNNNCTCC 2 cut(s) 230, 260
Bsc4I CCNNNNNNNGG 3 cut(s) 136, 617, 957
Bse1I ACTGG 2 cut(s) 622, 882
Bse3DI GCAATG 2 cut(s) 394, 835
BseAI TCCGGA 1 cut(s) 307
BseBI CCWGG 4 cut(s) 137, 243, 751, 963
BseCI ATCGAT 3 cut(s) 33, 333, 789
BseDI CCNNGG 4 cut(s) 242, 610, 750, 1203
BseGI GGATG 5 cut(s) 304, 547, 787, 886, 1020
BseLI CCNNNNNNNGG 3 cut(s) 136, 617, 957
BseMI GCAATG 2 cut(s) 394, 835
BseMII CTCAG 7 cut(s) 191, 226, 593, 947, 1101, 1142, 1215
BseNI ACTGG 2 cut(s) 622, 882
BseRI GAGGAG 2 cut(s) 62, 1174
BseX3I CGGCCG 1 cut(s) 98
BseXI GCAGC 2 cut(s) 238, 859
BsgI GTGCAG 1 cut(s) 866
Bsh1285I CGRYCG 1 cut(s) 101
BshFI GGCC 4 cut(s) 100, 749, 893, 961
BshVI ATCGAT 3 cut(s) 33, 333, 789
BsiEI CGRYCG 1 cut(s) 101
BsiHKAI GWGCWC 2 cut(s) 129, 192
BsiHKCI CYCGRG 1 cut(s) 170
BsiSI CCGG 4 cut(s) 44, 97, 308, 612
BslFI GGGAC 3 cut(s) 591, 1031, 1222
BslI CCNNNNNNNGG 3 cut(s) 136, 617, 957
BsmAI GTCTC 5 cut(s) 14, 44, 682, 1014, 1214
BsmFI GGGAC 3 cut(s) 591, 1031, 1222
BsmI GAATGC 1 cut(s) 213
BsnI GGCC 4 cut(s) 100, 749, 893, 961
Bso31I GGTCTC 3 cut(s) 14, 44, 682
BsoBI CYCGRG 1 cut(s) 170
Bsp119I TTCGAA 1 cut(s) 561
Bsp1286I GDGCHC 3 cut(s) 96, 129, 192
Bsp13I TCCGGA 1 cut(s) 307
Bsp143I GATC 5 cut(s) 357, 430, 499, 800, 943
Bsp1720I GCTNAGC 2 cut(s) 177, 579
BspACI CCGC 5 cut(s) 15, 72, 142, 385, 850
BspANI GGCC 4 cut(s) 100, 749, 893, 961
BspCNI CTCAG 7 cut(s) 190, 225, 592, 948, 1102, 1143, 1216
BspDI ATCGAT 3 cut(s) 33, 333, 789
BspEI TCCGGA 1 cut(s) 307
BspLI GGNNCC 6 cut(s) 95, 240, 247, 465, 607, 718
BspMAI CTGCAG 2 cut(s) 10, 228
BspMI ACCTGC 1 cut(s) 62
BspPI GGATC 4 cut(s) 425, 507, 808, 951
BspT104I TTCGAA 1 cut(s) 561
BspTNI GGTCTC 3 cut(s) 14, 44, 682
BsrDI GCAATG 2 cut(s) 394, 835
BsrI ACTGG 2 cut(s) 622, 882
BssECI CCNNGG 4 cut(s) 242, 610, 750, 1203
BssMI GATC 5 cut(s) 357, 430, 499, 800, 943
BssSI CACGAG 1 cut(s) 122
BssT1I CCWWGG 1 cut(s) 1203
Bst2BI CACGAG 1 cut(s) 122
Bst2UI CCWGG 4 cut(s) 137, 243, 751, 963
Bst4CI ACNGT 2 cut(s) 662, 839
Bst6I CTCTTC 1 cut(s) 999
BstAPI GCANNNNNTGC 1 cut(s) 1106
BstBAI YACGTR 1 cut(s) 374
BstBI TTCGAA 1 cut(s) 561
BstC8I GCNNGC 2 cut(s) 69, 1247
BstDEI CTNAG 7 cut(s) 177, 212, 579, 956, 1110, 1151, 1224
BstF5I GGATG 5 cut(s) 304, 547, 787, 886, 1020
BstHHI GCGC 2 cut(s) 1100, 1245
BstKTI GATC 5 cut(s) 360, 433, 502, 803, 946
BstMAI GTCTC 5 cut(s) 14, 44, 682, 1014, 1214
BstMBI GATC 5 cut(s) 357, 430, 499, 800, 943
BstMCI CGRYCG 1 cut(s) 101
BstMWI GCNNNNNNNGC 6 cut(s) 11, 14, 187, 393, 856, 1106
BstNI CCWGG 4 cut(s) 137, 243, 751, 963
BstNSI RCATGY 3 cut(s) 761, 1172, 1237
BstSCI CCNGG 5 cut(s) 135, 241, 610, 749, 961
BstSFI CTRYAG 2 cut(s) 6, 224
BstV1I GCAGC 2 cut(s) 238, 859
BstV2I GAAGAC 2 cut(s) 155, 1188
BstX2I RGATCY 1 cut(s) 800
BstYI RGATCY 1 cut(s) 800
BstZI CGGCCG 1 cut(s) 98
Bsu15I ATCGAT 3 cut(s) 33, 333, 789
BsuRI GGCC 4 cut(s) 100, 749, 893, 961
BsuTUI ATCGAT 3 cut(s) 33, 333, 789
BtgZI GCGATG 1 cut(s) 102
BtsCI GGATG 5 cut(s) 304, 547, 787, 886, 1020
BtsI GCAGTG 1 cut(s) 829
BtsIMutI CAGTG 4 cut(s) 615, 829, 844, 1148
BveI ACCTGC 1 cut(s) 62
Cac8I GCNNGC 2 cut(s) 69, 1247
CfoI GCGC 2 cut(s) 1100, 1245
Cfr13I GGNCC 3 cut(s) 139, 246, 605
ClaI ATCGAT 3 cut(s) 33, 333, 789
CseI GACGC 1 cut(s) 975
Csp6I GTAC 4 cut(s) 103, 413, 663, 1128
CviAII CATG 5 cut(s) 274, 745, 758, 1169, 1234
CviQI GTAC 4 cut(s) 103, 413, 663, 1128
DdeI CTNAG 7 cut(s) 177, 212, 579, 956, 1110, 1151, 1224
DpnI GATC 5 cut(s) 359, 432, 501, 802, 945
DpnII GATC 5 cut(s) 357, 430, 499, 800, 943
DrdI GACNNNNNNGTC 1 cut(s) 58
DseDI GACNNNNNNGTC 1 cut(s) 58
EaeI YGGCCR 2 cut(s) 98, 747
EagI CGGCCG 1 cut(s) 98
Eam1104I CTCTTC 1 cut(s) 999
EarI CTCTTC 1 cut(s) 999
EciI GGCGGA 1 cut(s) 131
Ecl136II GAGCTC 2 cut(s) 127, 190
EclXI CGGCCG 1 cut(s) 98
Eco130I CCWWGG 1 cut(s) 1203
Eco147I AGGCCT 1 cut(s) 893
Eco24I GRGCYC 3 cut(s) 96, 129, 192
Eco31I GGTCTC 3 cut(s) 14, 44, 682
Eco32I GATATC 1 cut(s) 331
Eco47I GGWCC 3 cut(s) 139, 246, 605
Eco52I CGGCCG 1 cut(s) 98
Eco53kI GAGCTC 2 cut(s) 127, 190
Eco57I CTGAAG 3 cut(s) 218, 1091, 1152
Eco72I CACGTG 1 cut(s) 374
Eco88I CYCGRG 1 cut(s) 170
EcoICRI GAGCTC 2 cut(s) 127, 190
EcoO109I RGGNCCY 1 cut(s) 246
EcoRII CCWGG 4 cut(s) 135, 241, 749, 961
EcoRV GATATC 1 cut(s) 331
EcoT14I CCWWGG 1 cut(s) 1203
EcoT38I GRGCYC 3 cut(s) 96, 129, 192
ErhI CCWWGG 1 cut(s) 1203
FaeI CATG 5 cut(s) 277, 748, 761, 1172, 1237
FaqI GGGAC 3 cut(s) 591, 1031, 1222
FatI CATG 5 cut(s) 273, 744, 757, 1168, 1233
FauNDI CATATG 1 cut(s) 478
Fnu4HI GCNGC 5 cut(s) 6, 15, 72, 227, 848
FokI GGATG 5 cut(s) 291, 534, 794, 893, 1007
FriOI GRGCYC 3 cut(s) 96, 129, 192
Fsp4HI GCNGC 5 cut(s) 6, 15, 72, 227, 848
FspBI CTAG 1 cut(s) 636
FspI TGCGCA 1 cut(s) 1244
GlaI GCGC 2 cut(s) 1099, 1244
GluI GCNGC 5 cut(s) 6, 15, 72, 227, 848
GsuI CTGGAG 2 cut(s) 113, 119
HaeIII GGCC 4 cut(s) 100, 749, 893, 961
HapII CCGG 4 cut(s) 44, 97, 308, 612
HgaI GACGC 1 cut(s) 975
HhaI GCGC 2 cut(s) 1100, 1245
Hin1II CATG 5 cut(s) 277, 748, 761, 1172, 1237
Hin6I GCGC 2 cut(s) 1098, 1243
HinP1I GCGC 2 cut(s) 1098, 1243
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HinfI GANTC 5 cut(s) 168, 470, 591, 815, 1007
HpaII CCGG 4 cut(s) 44, 97, 308, 612
HphI GGTGA 2 cut(s) 269, 845
Hpy166II GTNNAC 1 cut(s) 268
Hpy188I TCNGA 3 cut(s) 447, 688, 699
Hpy8I GTNNAC 1 cut(s) 268
HpyAV CCTTC 5 cut(s) 305, 454, 707, 1111, 1210
HpyCH4III ACNGT 2 cut(s) 662, 839
HpyCH4IV ACGT 2 cut(s) 270, 373
HpyCH4V TGCA 5 cut(s) 8, 226, 847, 1148, 1168
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 14, 187, 393, 856, 1106
HpyF3I CTNAG 7 cut(s) 177, 212, 579, 956, 1110, 1151, 1224
HpySE526I ACGT 2 cut(s) 270, 373
Hsp92II CATG 5 cut(s) 277, 748, 761, 1172, 1237
HspAI GCGC 2 cut(s) 1098, 1243
Kpn2I TCCGGA 1 cut(s) 307
Kzo9I GATC 5 cut(s) 357, 430, 499, 800, 943
LmnI GCTCC 5 cut(s) 99, 132, 138, 238, 766
Lsp1109I GCAGC 2 cut(s) 238, 859
LweI GCATC 2 cut(s) 25, 1109
MaeI CTAG 1 cut(s) 636
MaeII ACGT 2 cut(s) 270, 373
MaeIII GTNAC 3 cut(s) 182, 833, 1171
MalI GATC 5 cut(s) 359, 432, 501, 802, 945
MboI GATC 5 cut(s) 357, 430, 499, 800, 943
MflI RGATCY 1 cut(s) 800
MhlI GDGCHC 3 cut(s) 96, 129, 192
MlsI TGGCCA 1 cut(s) 749
MluCI AATT 6 cut(s) 193, 540, 554, 981, 986, 1048
MluNI TGGCCA 1 cut(s) 749
MlyI GAGTC 3 cut(s) 162, 600, 1016
MmeI TCCRAC 1 cut(s) 136
Mox20I TGGCCA 1 cut(s) 749
MroI TCCGGA 1 cut(s) 307
MscI TGGCCA 1 cut(s) 749
MseI TTAA 5 cut(s) 297, 510, 543, 870, 1052
MslI CAYNNNNRTG 1 cut(s) 776
Msp20I TGGCCA 1 cut(s) 749
MspA1I CMGCKG 1 cut(s) 850
MspI CCGG 4 cut(s) 44, 97, 308, 612
MspR9I CCNGG 5 cut(s) 137, 243, 612, 751, 963
Mva1269I GAATGC 1 cut(s) 213
MvaI CCWGG 4 cut(s) 137, 243, 751, 963
MwoI GCNNNNNNNGC 6 cut(s) 11, 14, 187, 393, 856, 1106
NciI CCSGG 1 cut(s) 612
NdeI CATATG 1 cut(s) 478
NdeII GATC 5 cut(s) 357, 430, 499, 800, 943
NlaIII CATG 5 cut(s) 277, 748, 761, 1172, 1237
NlaIV GGNNCC 6 cut(s) 95, 240, 247, 465, 607, 718
NmeAIII GCCGAG 3 cut(s) 43, 63, 1108
NmuCI GTSAC 1 cut(s) 833
NsbI TGCGCA 1 cut(s) 1244
NspI RCATGY 3 cut(s) 761, 1172, 1237
NspV TTCGAA 1 cut(s) 561
PaeR7I CTCGAG 1 cut(s) 170
PceI AGGCCT 1 cut(s) 893
PciI ACATGT 1 cut(s) 1233
PctI GAATGC 1 cut(s) 213
PfeI GAWTC 2 cut(s) 470, 815
PkrI GCNGC 5 cut(s) 7, 16, 73, 228, 849
PleI GAGTC 3 cut(s) 162, 599, 1015
PmaCI CACGTG 1 cut(s) 374
PmlI CACGTG 1 cut(s) 374
PpsI GAGTC 3 cut(s) 162, 599, 1015
Ppu21I YACGTR 1 cut(s) 374
PpuMI RGGWCCY 1 cut(s) 246
PscI ACATGT 1 cut(s) 1233
Psp124BI GAGCTC 2 cut(s) 129, 192
Psp5II RGGWCCY 1 cut(s) 246
Psp6I CCWGG 4 cut(s) 135, 241, 749, 961
PspCI CACGTG 1 cut(s) 374
PspGI CCWGG 4 cut(s) 135, 241, 749, 961
PspN4I GGNNCC 6 cut(s) 95, 240, 247, 465, 607, 718
PspPI GGNCC 3 cut(s) 139, 246, 605
PspPPI RGGWCCY 1 cut(s) 246
PspXI VCTCGAGB 1 cut(s) 170
PstI CTGCAG 2 cut(s) 10, 228
PsuI RGATCY 1 cut(s) 800
RsaI GTAC 4 cut(s) 104, 414, 664, 1129
RsaNI GTAC 4 cut(s) 103, 413, 663, 1128
RseI CAYNNNNRTG 1 cut(s) 776
SacI GAGCTC 2 cut(s) 129, 192
SaqAI TTAA 5 cut(s) 297, 510, 543, 870, 1052
SatI GCNGC 5 cut(s) 6, 15, 72, 227, 848
Sau3AI GATC 5 cut(s) 357, 430, 499, 800, 943
Sau96I GGNCC 3 cut(s) 139, 246, 605
ScaI AGTACT 1 cut(s) 414
SchI GAGTC 3 cut(s) 162, 600, 1016
ScrFI CCNGG 5 cut(s) 137, 243, 612, 751, 963
SduI GDGCHC 3 cut(s) 96, 129, 192
SfaNI GCATC 2 cut(s) 25, 1109
SfcI CTRYAG 2 cut(s) 6, 224
Sfr274I CTCGAG 1 cut(s) 170
SfuI TTCGAA 1 cut(s) 561
SinI GGWCC 3 cut(s) 139, 246, 605
SlaI CTCGAG 1 cut(s) 170
SmiMI CAYNNNNRTG 1 cut(s) 776
SmlI CTYRAG 2 cut(s) 170, 860
SmoI CTYRAG 2 cut(s) 170, 860
Sse9I AATT 6 cut(s) 193, 540, 554, 981, 986, 1048
SseBI AGGCCT 1 cut(s) 893
SsiI CCGC 5 cut(s) 15, 72, 142, 385, 850
SspMI CTAG 1 cut(s) 636
SstI GAGCTC 2 cut(s) 129, 192
StuI AGGCCT 1 cut(s) 893
StyD4I CCNGG 5 cut(s) 135, 241, 610, 749, 961
StyI CCWWGG 1 cut(s) 1203
TaaI ACNGT 2 cut(s) 662, 839
TaiI ACGT 2 cut(s) 273, 376
TaqI TCGA 6 cut(s) 33, 166, 171, 333, 561, 789
TasI AATT 6 cut(s) 193, 540, 554, 981, 986, 1048
TatI WGTACW 3 cut(s) 412, 662, 1127
TauI GCSGC 2 cut(s) 17, 74
TfiI GAWTC 2 cut(s) 470, 815
Tru1I TTAA 5 cut(s) 297, 510, 543, 870, 1052
Tru9I TTAA 5 cut(s) 297, 510, 543, 870, 1052
TscAI CASTG 4 cut(s) 622, 829, 844, 1155
TseFI GTSAC 1 cut(s) 833
TseI GCWGC 3 cut(s) 5, 226, 847
Tsp45I GTSAC 1 cut(s) 833
TspDTI ATGAA 8 cut(s) 293, 395, 464, 658, 798, 1061, 1106, 1226
TspRI CASTG 4 cut(s) 622, 829, 844, 1155
VpaK11BI GGWCC 3 cut(s) 139, 246, 605
XapI RAATTY 2 cut(s) 986, 1048
XceI RCATGY 3 cut(s) 761, 1172, 1237
XhoI CTCGAG 1 cut(s) 170
XspI CTAG 1 cut(s) 636
ZrmI AGTACT 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.