RH2CG046600

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: Sequence Only
Biological Identity
rosa_samantha
Unknown
OG0012336
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG046600.1

Sequence Viewer

Length: 1260 bp
ATGGCTGCCGTCGGCGTCGAGACCAAGCCCGTCGAGGCCGTGCCGGAGGACACCTGCTCCGCCAAGCTCGCCGCCTCCAAACTCGGCGAGGGGCTCCGCCCTTACTATCTCCAACACATTCACGAGCTCCAGCTCCAGGTCCGCCAGAAGACCCACAATCTCAATCGACTCGAGGCTCAGCGGAACGAGCTCAATTCCAGAGTGAGAATGCTCAGGGAAGAACTACAACTTCTTCAGGAGCCTGGGTCCTATGTCGGTGAGGTTGTCAACGTCATGGGAAAGAACAAGGTTTTGGTTAAGGTTCATCCGGAAGGGAAGTATGTGGTTGATATTGATAAGAACATTGATATCACAAAGATCACACCATCTACAAGAGTGGCTCTACGCAATGACAGCTATGTTCTTCATTTAGTGCTGCCAAGCAAAGTAGATCCTCTCGTCAATCTGATGAAAGTGGAAAAGGTTCCAGATTCTACATATGATATGATTGGTGGTCTGGATCAGCAGATTAAAGAAATCAAAGAGGTCATTGAACTTCCAATTAAACATCCTGAATTGTTTGAAAGTCTTGGAATAGCTCAGCCAAAGGGAGTCCTGCTTTATGGTCCCCCCGGCACTGGCAAAACCTTGTTGGCTAGGGCTGTGGCTCATCACACTGACTGTACTTTCATCAGGGTTTCTGGTTCAGAGTTGGTTCAGAAATACATTGGGGAAGGTTCCCGAATGGTTAGAGAACTTTTCGTAATGGCCAGGGAACATGCTCCATCTATCATTTTTATGGATGAAATCGATAGTATTGGATCTGCTCGCATGGAATCTGGCAGTGGCAATGGGGACAGCGAGGTGCAGAGGACTATGCTTGAGCTTCTTAACCAACTGGATGGATTTGAGGCCTCAAACAAAATCAAGGTTTTGATGGCTACAAATCGTATTGATATTCTGGATCAAGCCCTGCTGAGGCCAGGACGCATAGACAGAAAGATCGAATTTCCCAACCCTAACGAAGAGTCTCGTTGGGACATTCTGAAAATCCATTCAAGAAGAATGAATTTAATGCGTGGAATTGACCTGAAGAAGATTGCGGAGAAAATGAACGGCGCCTCTGGCGCTGAGTTGAAGGCGGTTTGCACTGAAGCAGGAATGTTTGCACTGAGGGAGAGGAGAGTGCATGTAACCCAAGAAGACTTTGAGATGGCAGTTGCCAAGGTTATGAAGAAGGAGACGGAGAAGAATATGTCCCTGCGTAAGCTGTGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

419

Amino Acids

47.2

Weight (kDa)

8.52

Isoelectric Point (pI)

42.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prot_ATP_ID_OB_C PF16450 85 - 140 9.8e-13 Proteasomal ATPase OB C-terminal domain
AAA PF00004 198 - 331 5.4e-44 ATPase family associated with various cellular activities (AAA)
AAA_2 PF07724 198 - 291 1e-05 AAA domain (Cdc48 subfamily)
AAA_lid_PRS2_C PF23902 336 - 405 9.9e-06 PRS2 AAA+ lid C-terminal domain
AAA_lid_3 PF17862 355 - 397 1.5e-14 AAA+ lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012336)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19990 AT5G19990 AT5G19990 AT5G20000
fragaria_vesca FvH4_1g03980
malus_domestica MD02G1226600.v1.1 MD07G1087400.v1.1
prunus_persica Prupe.7G237100_v2.0.a1
pyrus_communis pycom02g19560
rosa_chinensis RchiOBHm_Chr2g0089461
rosa_laevigata RLG00000016031
rosa_multiflora Rmu_sc0000197.1_g000006
rosa_roxburghii Rroxscaffold_2G00151910 Rroxscaffold_6G00403280
rosa_rugosa Rorug02G0001000
rosa_samantha Rh2AG046200 Rh2CG046600 Rh2DG046200
rosa_wichuraiana Rw2G003640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 62
Acc36I ACCTGC 1 cut(s) 62
AccB1I GGYRCC 1 cut(s) 1097
AccIII TCCGGA 1 cut(s) 307
AciI CCGC 7 cut(s) 60, 72, 97, 142, 181, 1082, 1121
AclWI GGATC 4 cut(s) 425, 507, 808, 951
AcoI YGGCCR 1 cut(s) 747
AcsI RAATTY 2 cut(s) 986, 1048
AcuI CTGAAG 3 cut(s) 218, 1091, 1152
AcyI GRCGYC 2 cut(s) 15, 1098
AfaI GTAC 1 cut(s) 664
AfiI CCNNNNNNNGG 3 cut(s) 136, 617, 957
AgsI TTSAA 4 cut(s) 533, 563, 1038, 1117
AjnI CCWGG 4 cut(s) 135, 241, 749, 961
AjuI GAANNNNNNNTTGG 2 cut(s) 275, 307
AluBI AGCT 8 cut(s) 67, 127, 133, 190, 396, 578, 865, 1249
AluI AGCT 8 cut(s) 67, 127, 133, 190, 396, 578, 865, 1249
Alw21I GWGCWC 2 cut(s) 129, 192
Alw26I GTCTC 3 cut(s) 14, 1014, 1214
AlwI GGATC 4 cut(s) 425, 507, 808, 951
Ama87I CYCGRG 1 cut(s) 170
Aor13HI TCCGGA 1 cut(s) 307
AoxI GGCC 4 cut(s) 36, 747, 891, 959
ApeKI GCWGC 2 cut(s) 5, 415
ApoI RAATTY 2 cut(s) 986, 1048
Asp700I GAANNNNTTC 1 cut(s) 462
AspLEI GCGC 2 cut(s) 1100, 1109
AspS9I GGNCC 3 cut(s) 139, 246, 605
AsuC2I CCSGG 1 cut(s) 612
AsuHPI GGTGA 1 cut(s) 269
AvaI CYCGRG 1 cut(s) 170
AvaII GGWCC 3 cut(s) 139, 246, 605
BalI TGGCCA 1 cut(s) 749
BanI GGYRCC 1 cut(s) 1097
BanII GRGCYC 3 cut(s) 96, 129, 192
BauI CACGAG 1 cut(s) 122
BbsI GAAGAC 2 cut(s) 155, 1188
Bbv12I GWGCWC 2 cut(s) 129, 192
BbvCI CCTCAGC 1 cut(s) 956
BbvI GCAGC 1 cut(s) 402
BccI CCATC 5 cut(s) 373, 772, 875, 910, 1186
BceAI ACGGC 2 cut(s) 23, 1111
BciT130I CCWGG 4 cut(s) 137, 243, 751, 963
BcnI CCSGG 1 cut(s) 612
BcoDI GTCTC 3 cut(s) 14, 1014, 1214
BfaI CTAG 1 cut(s) 636
BfoI RGCGCY 2 cut(s) 1101, 1110
BfuAI ACCTGC 1 cut(s) 62
BisI GCNGC 3 cut(s) 6, 72, 416
BlpI GCTNAGC 2 cut(s) 177, 579
BlsI GCNGC 3 cut(s) 7, 73, 417
Bme1390I CCNGG 5 cut(s) 137, 243, 612, 751, 963
Bme18I GGWCC 3 cut(s) 139, 246, 605
BmeT110I CYCGRG 1 cut(s) 170
BmgT120I GGNCC 3 cut(s) 139, 246, 605
BmiI GGNNCC 7 cut(s) 95, 240, 247, 465, 607, 718, 1099
BmrFI CCNGG 5 cut(s) 137, 243, 612, 751, 963
BpiI GAAGAC 2 cut(s) 155, 1188
BpmI CTGGAG 2 cut(s) 113, 119
Bpu10I CCTNAGC 2 cut(s) 212, 956
Bpu1102I GCTNAGC 2 cut(s) 177, 579
BpuEI CTTGAG 1 cut(s) 881
BpuMI CCSGG 1 cut(s) 612
Bsa29I ATCGAT 1 cut(s) 789
BsaHI GRCGYC 2 cut(s) 15, 1098
BsaI GGTCTC 1 cut(s) 14
BsaJI CCNNGG 4 cut(s) 242, 610, 750, 1203
BsaWI WCCGGW 1 cut(s) 307
BsaXI ACNNNNNCTCC 4 cut(s) 41, 71, 230, 260
Bsc4I CCNNNNNNNGG 3 cut(s) 136, 617, 957
Bse1I ACTGG 2 cut(s) 622, 882
Bse3DI GCAATG 2 cut(s) 394, 835
BseAI TCCGGA 1 cut(s) 307
BseBI CCWGG 4 cut(s) 137, 243, 751, 963
BseCI ATCGAT 1 cut(s) 789
BseDI CCNNGG 4 cut(s) 242, 610, 750, 1203
BseGI GGATG 4 cut(s) 304, 547, 787, 886
BseLI CCNNNNNNNGG 3 cut(s) 136, 617, 957
BseMI GCAATG 2 cut(s) 394, 835
BseMII CTCAG 6 cut(s) 191, 226, 593, 947, 1101, 1142
BseNI ACTGG 2 cut(s) 622, 882
BseRI GAGGAG 1 cut(s) 1174
BseXI GCAGC 1 cut(s) 402
BsgI GTGCAG 1 cut(s) 866
BshFI GGCC 4 cut(s) 38, 749, 893, 961
BshNI GGYRCC 1 cut(s) 1097
BshVI ATCGAT 1 cut(s) 789
BsiHKAI GWGCWC 2 cut(s) 129, 192
BsiHKCI CYCGRG 1 cut(s) 170
BsiSI CCGG 3 cut(s) 44, 308, 612
BslFI GGGAC 4 cut(s) 591, 848, 1031, 1222
BslI CCNNNNNNNGG 3 cut(s) 136, 617, 957
BsmAI GTCTC 3 cut(s) 14, 1014, 1214
BsmBI CGTCTC 1 cut(s) 1214
BsmFI GGGAC 4 cut(s) 591, 848, 1031, 1222
BsmI GAATGC 1 cut(s) 213
BsnI GGCC 4 cut(s) 38, 749, 893, 961
Bso31I GGTCTC 1 cut(s) 14
BsoBI CYCGRG 1 cut(s) 170
Bsp1286I GDGCHC 3 cut(s) 96, 129, 192
Bsp13I TCCGGA 1 cut(s) 307
Bsp143I GATC 6 cut(s) 357, 430, 499, 800, 943, 981
Bsp1720I GCTNAGC 2 cut(s) 177, 579
BspACI CCGC 7 cut(s) 60, 72, 97, 142, 181, 1082, 1121
BspANI GGCC 4 cut(s) 38, 749, 893, 961
BspCNI CTCAG 6 cut(s) 190, 225, 592, 948, 1102, 1143
BspDI ATCGAT 1 cut(s) 789
BspEI TCCGGA 1 cut(s) 307
BspLI GGNNCC 7 cut(s) 95, 240, 247, 465, 607, 718, 1099
BspMI ACCTGC 1 cut(s) 62
BspPI GGATC 4 cut(s) 425, 507, 808, 951
BspT107I GGYRCC 1 cut(s) 1097
BspTNI GGTCTC 1 cut(s) 14
BsrDI GCAATG 2 cut(s) 394, 835
BsrI ACTGG 2 cut(s) 622, 882
BssECI CCNNGG 4 cut(s) 242, 610, 750, 1203
BssMI GATC 6 cut(s) 357, 430, 499, 800, 943, 981
BssNI GRCGYC 2 cut(s) 15, 1098
BssSI CACGAG 1 cut(s) 122
BssT1I CCWWGG 1 cut(s) 1203
Bst2BI CACGAG 1 cut(s) 122
Bst2UI CCWGG 4 cut(s) 137, 243, 751, 963
Bst4CI ACNGT 1 cut(s) 662
Bst6I CTCTTC 1 cut(s) 999
BstACI GRCGYC 2 cut(s) 15, 1098
BstC8I GCNNGC 2 cut(s) 69, 808
BstDEI CTNAG 6 cut(s) 177, 212, 579, 956, 1110, 1151
BstF5I GGATG 4 cut(s) 304, 547, 787, 886
BstH2I RGCGCY 2 cut(s) 1101, 1110
BstHHI GCGC 2 cut(s) 1100, 1109
BstKTI GATC 6 cut(s) 360, 433, 502, 803, 946, 984
BstMAI GTCTC 3 cut(s) 14, 1014, 1214
BstMBI GATC 6 cut(s) 357, 430, 499, 800, 943, 981
BstMWI GCNNNNNNNGC 5 cut(s) 68, 187, 393, 1104, 1106
BstNI CCWGG 4 cut(s) 137, 243, 751, 963
BstNSI RCATGY 2 cut(s) 761, 1172
BstSCI CCNGG 5 cut(s) 135, 241, 610, 749, 961
BstV1I GCAGC 1 cut(s) 402
BstV2I GAAGAC 2 cut(s) 155, 1188
BstX2I RGATCY 2 cut(s) 430, 800
BstXI CCANNNNNNTGG 1 cut(s) 881
BstYI RGATCY 2 cut(s) 430, 800
Bsu15I ATCGAT 1 cut(s) 789
BsuRI GGCC 4 cut(s) 38, 749, 893, 961
BsuTUI ATCGAT 1 cut(s) 789
BtsCI GGATG 4 cut(s) 304, 547, 787, 886
BtsI GCAGTG 1 cut(s) 829
BtsIMutI CAGTG 5 cut(s) 615, 654, 829, 1128, 1148
BveI ACCTGC 1 cut(s) 62
Cac8I GCNNGC 2 cut(s) 69, 808
CfoI GCGC 2 cut(s) 1100, 1109
Cfr13I GGNCC 3 cut(s) 139, 246, 605
ClaI ATCGAT 1 cut(s) 789
CseI GACGC 2 cut(s) 4, 975
Csp6I GTAC 1 cut(s) 663
CviAII CATG 4 cut(s) 274, 758, 811, 1169
CviQI GTAC 1 cut(s) 663
DdeI CTNAG 6 cut(s) 177, 212, 579, 956, 1110, 1151
DinI GGCGCC 1 cut(s) 1099
DpnI GATC 6 cut(s) 359, 432, 501, 802, 945, 983
DpnII GATC 6 cut(s) 357, 430, 499, 800, 943, 981
EaeI YGGCCR 1 cut(s) 747
Eam1104I CTCTTC 1 cut(s) 999
EarI CTCTTC 1 cut(s) 999
EciI GGCGGA 3 cut(s) 49, 86, 131
Ecl136II GAGCTC 2 cut(s) 127, 190
Eco130I CCWWGG 1 cut(s) 1203
Eco147I AGGCCT 1 cut(s) 893
Eco24I GRGCYC 3 cut(s) 96, 129, 192
Eco31I GGTCTC 1 cut(s) 14
Eco32I GATATC 1 cut(s) 349
Eco47I GGWCC 3 cut(s) 139, 246, 605
Eco53kI GAGCTC 2 cut(s) 127, 190
Eco57I CTGAAG 3 cut(s) 218, 1091, 1152
Eco88I CYCGRG 1 cut(s) 170
EcoICRI GAGCTC 2 cut(s) 127, 190
EcoO109I RGGNCCY 1 cut(s) 246
EcoRII CCWGG 4 cut(s) 135, 241, 749, 961
EcoRV GATATC 1 cut(s) 349
EcoT14I CCWWGG 1 cut(s) 1203
EcoT38I GRGCYC 3 cut(s) 96, 129, 192
EgeI GGCGCC 1 cut(s) 1099
EheI GGCGCC 1 cut(s) 1099
ErhI CCWWGG 1 cut(s) 1203
Esp3I CGTCTC 1 cut(s) 1214
FaeI CATG 4 cut(s) 277, 761, 814, 1172
FaqI GGGAC 4 cut(s) 591, 848, 1031, 1222
FatI CATG 4 cut(s) 273, 757, 810, 1168
FauNDI CATATG 1 cut(s) 478
Fnu4HI GCNGC 3 cut(s) 6, 72, 416
FokI GGATG 4 cut(s) 291, 534, 794, 893
FriOI GRGCYC 3 cut(s) 96, 129, 192
Fsp4HI GCNGC 3 cut(s) 6, 72, 416
FspBI CTAG 1 cut(s) 636
GlaI GCGC 2 cut(s) 1099, 1108
GluI GCNGC 3 cut(s) 6, 72, 416
GsuI CTGGAG 2 cut(s) 113, 119
HaeII RGCGCY 2 cut(s) 1101, 1110
HaeIII GGCC 4 cut(s) 38, 749, 893, 961
HapII CCGG 3 cut(s) 44, 308, 612
HgaI GACGC 2 cut(s) 4, 975
HhaI GCGC 2 cut(s) 1100, 1109
Hin1I GRCGYC 2 cut(s) 15, 1098
Hin1II CATG 4 cut(s) 277, 761, 814, 1172
Hin6I GCGC 2 cut(s) 1098, 1107
HinP1I GCGC 2 cut(s) 1098, 1107
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HinfI GANTC 5 cut(s) 168, 470, 591, 815, 1007
HpaII CCGG 3 cut(s) 44, 308, 612
HphI GGTGA 1 cut(s) 269
Hpy166II GTNNAC 1 cut(s) 268
Hpy188I TCNGA 4 cut(s) 447, 688, 699, 1026
Hpy8I GTNNAC 1 cut(s) 268
Hpy99I CGWCG 3 cut(s) 14, 20, 35
HpyAV CCTTC 4 cut(s) 305, 707, 1111, 1210
HpyCH4III ACNGT 1 cut(s) 662
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 4 cut(s) 847, 1128, 1148, 1168
HpyF10VI GCNNNNNNNGC 5 cut(s) 68, 187, 393, 1104, 1106
HpyF3I CTNAG 6 cut(s) 177, 212, 579, 956, 1110, 1151
HpySE526I ACGT 1 cut(s) 270
Hsp92I GRCGYC 2 cut(s) 15, 1098
Hsp92II CATG 4 cut(s) 277, 761, 814, 1172
HspAI GCGC 2 cut(s) 1098, 1107
KasI GGCGCC 1 cut(s) 1097
Kpn2I TCCGGA 1 cut(s) 307
Kzo9I GATC 6 cut(s) 357, 430, 499, 800, 943, 981
LmnI GCTCC 6 cut(s) 62, 99, 132, 138, 238, 766
Lsp1109I GCAGC 1 cut(s) 402
MaeI CTAG 1 cut(s) 636
MaeII ACGT 1 cut(s) 270
MaeIII GTNAC 1 cut(s) 1171
MalI GATC 6 cut(s) 359, 432, 501, 802, 945, 983
MboI GATC 6 cut(s) 357, 430, 499, 800, 943, 981
MflI RGATCY 2 cut(s) 430, 800
MhlI GDGCHC 3 cut(s) 96, 129, 192
MlsI TGGCCA 1 cut(s) 749
MluCI AATT 6 cut(s) 193, 540, 554, 986, 1048, 1062
MluNI TGGCCA 1 cut(s) 749
Mly113I GGCGCC 1 cut(s) 1098
MlyI GAGTC 3 cut(s) 162, 600, 1016
MmeI TCCRAC 1 cut(s) 136
Mox20I TGGCCA 1 cut(s) 749
MroI TCCGGA 1 cut(s) 307
MroXI GAANNNNTTC 1 cut(s) 462
MscI TGGCCA 1 cut(s) 749
MseI TTAA 5 cut(s) 297, 510, 543, 870, 1052
MslI CAYNNNNRTG 1 cut(s) 776
Msp20I TGGCCA 1 cut(s) 749
MspA1I CMGCKG 1 cut(s) 181
MspI CCGG 3 cut(s) 44, 308, 612
MspR9I CCNGG 5 cut(s) 137, 243, 612, 751, 963
Mva1269I GAATGC 1 cut(s) 213
MvaI CCWGG 4 cut(s) 137, 243, 751, 963
MwoI GCNNNNNNNGC 5 cut(s) 68, 187, 393, 1104, 1106
NarI GGCGCC 1 cut(s) 1098
NciI CCSGG 1 cut(s) 612
NdeI CATATG 1 cut(s) 478
NdeII GATC 6 cut(s) 357, 430, 499, 800, 943, 981
NlaIII CATG 4 cut(s) 277, 761, 814, 1172
NlaIV GGNNCC 7 cut(s) 95, 240, 247, 465, 607, 718, 1099
NmeAIII GCCGAG 1 cut(s) 63
NspI RCATGY 2 cut(s) 761, 1172
PaeR7I CTCGAG 1 cut(s) 170
PaqCI CACCTGC 1 cut(s) 62
PceI AGGCCT 1 cut(s) 893
PctI GAATGC 1 cut(s) 213
PdmI GAANNNNTTC 1 cut(s) 462
PfeI GAWTC 2 cut(s) 470, 815
PkrI GCNGC 3 cut(s) 7, 73, 417
PleI GAGTC 3 cut(s) 162, 599, 1015
PluTI GGCGCC 1 cut(s) 1101
PpsI GAGTC 3 cut(s) 162, 599, 1015
PpuMI RGGWCCY 1 cut(s) 246
Psp124BI GAGCTC 2 cut(s) 129, 192
Psp5II RGGWCCY 1 cut(s) 246
Psp6I CCWGG 4 cut(s) 135, 241, 749, 961
PspGI CCWGG 4 cut(s) 135, 241, 749, 961
PspN4I GGNNCC 7 cut(s) 95, 240, 247, 465, 607, 718, 1099
PspPI GGNCC 3 cut(s) 139, 246, 605
PspPPI RGGWCCY 1 cut(s) 246
PspXI VCTCGAGB 1 cut(s) 170
PsuI RGATCY 2 cut(s) 430, 800
RsaI GTAC 1 cut(s) 664
RsaNI GTAC 1 cut(s) 663
RseI CAYNNNNRTG 1 cut(s) 776
SacI GAGCTC 2 cut(s) 129, 192
SaqAI TTAA 5 cut(s) 297, 510, 543, 870, 1052
SatI GCNGC 3 cut(s) 6, 72, 416
Sau3AI GATC 6 cut(s) 357, 430, 499, 800, 943, 981
Sau96I GGNCC 3 cut(s) 139, 246, 605
SchI GAGTC 3 cut(s) 162, 600, 1016
ScrFI CCNGG 5 cut(s) 137, 243, 612, 751, 963
SduI GDGCHC 3 cut(s) 96, 129, 192
SfoI GGCGCC 1 cut(s) 1099
Sfr274I CTCGAG 1 cut(s) 170
SinI GGWCC 3 cut(s) 139, 246, 605
SlaI CTCGAG 1 cut(s) 170
SmiMI CAYNNNNRTG 1 cut(s) 776
SmlI CTYRAG 2 cut(s) 170, 860
SmoI CTYRAG 2 cut(s) 170, 860
Sse9I AATT 6 cut(s) 193, 540, 554, 986, 1048, 1062
SseBI AGGCCT 1 cut(s) 893
SsiI CCGC 7 cut(s) 60, 72, 97, 142, 181, 1082, 1121
SspDI GGCGCC 1 cut(s) 1097
SspMI CTAG 1 cut(s) 636
SstI GAGCTC 2 cut(s) 129, 192
StuI AGGCCT 1 cut(s) 893
StyD4I CCNGG 5 cut(s) 135, 241, 610, 749, 961
StyI CCWWGG 1 cut(s) 1203
TaaI ACNGT 1 cut(s) 662
TaiI ACGT 1 cut(s) 273
TaqI TCGA 6 cut(s) 18, 33, 166, 171, 789, 984
TasI AATT 6 cut(s) 193, 540, 554, 986, 1048, 1062
TatI WGTACW 1 cut(s) 662
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 2 cut(s) 470, 815
Tru1I TTAA 5 cut(s) 297, 510, 543, 870, 1052
Tru9I TTAA 5 cut(s) 297, 510, 543, 870, 1052
TscAI CASTG 5 cut(s) 622, 661, 829, 1135, 1155
TseI GCWGC 2 cut(s) 5, 415
TspDTI ATGAA 8 cut(s) 293, 395, 464, 658, 798, 1061, 1106, 1226
TspGWI ACGGA 1 cut(s) 1238
TspRI CASTG 5 cut(s) 622, 661, 829, 1135, 1155
VpaK11BI GGWCC 3 cut(s) 139, 246, 605
XapI RAATTY 2 cut(s) 986, 1048
XceI RCATGY 2 cut(s) 761, 1172
XhoI CTCGAG 1 cut(s) 170
XmnI GAANNNNTTC 1 cut(s) 462
XspI CTAG 1 cut(s) 636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.