Rroxscaffold_6G00403280

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0012336
Physical Location & Seq
Forward (+)
25748574 .. 25749832
1259 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00403280.1

Sequence Viewer

Length: 1065 bp
ATGGCTGCCGTCGGCGTCGAGACCAAGCCCGTCGAGGCCGTGCCGGAGGACACCTGCTCCGCCAAGCTCGCCGCCTCCAAACTCGGCGAGGGGCTCCGCCCTTACTATCTCCAACACATTCACGAGCTCCAGCTCCAGGTCCGCCAGAAGACCCACAATCTCAATCGACTCGAGGCTCAGCGGAACGAGCTCAATTCCAGAGTGAGAATGCTCAGGGAAGAACTACAACTTCTTCAGGAGCCTGGGTCCTATGTCGGTGAGGTTGTCAACGTCATGGGAAAGAACAAGGTTTTGGTTAAGGTTCATCCGGAAGGGAAGTATGTGGTTGATATTGATAAGAACATTGATATCACAAAGATCACACCATCTACAAGAGTGGCTCTACGCAATGACAGCTATGTTCTTCATTTAGTGCTGCCAAGCAAAGTAGATCCTCTCGTCAATCTGATGAAAGTGGAAAAGGTTCCAGATTCTACATATGATATGATTGGTGAGTTGGTTCAGAAATACATTGGGGAAGGTTCCCGAATGGTTAGAGAACTTTTCGTAATGGCCAGGGAACATGCTCCATCTATCATTTTTATGGATGAAATTGATAGTATTGGATCTGCTCGCATGGAATCTGGCAGTGGCAATGGGGACAGCGAGGTGCAGAGGACTATGCTTGAGCTTCTTAACCAACTGGATGGATTTGAGGCCTCAAACAAAATCAAGGTTCTGATGGCTACAAATCGTATTGATATTCTGGATCAAGCCCTGCTGAGGCCAGGACGCATAGACAGAAAGATCGAATTTCCCAACCCTAACGAAGAGTCTCGCTGGGACATTCTGAAAATCCATTCAAGAAGAATGAATTTAATGCGTGGAATTGACCTGAAGAAGATTGCGGAGAAAATGAACGGCGCCTCTGGCGCTGAGTTGAAGGCTGTTTGCACTGAAGCAGGAATGTTTGCACTGAGGGAGAGGAGAGTGCATGTAACCCAAGAAGACTTTGAGATGGCAGTTGCCAAGGTTATGAAGAAGGAGACGGAGAAGAATATGTCCCTGCGTAAGCTGTGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

354

Amino Acids

40.2

Weight (kDa)

8.63

Isoelectric Point (pI)

44.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prot_ATP_ID_OB_C PF16450 85 - 140 7.6e-13 Proteasomal ATPase OB C-terminal domain
AAA PF00004 164 - 266 1.9e-26 ATPase family associated with various cellular activities (AAA)
AAA_lid_PRS2_C PF23902 271 - 340 7.6e-06 PRS2 AAA+ lid C-terminal domain
AAA_lid_3 PF17862 290 - 332 1.2e-14 AAA+ lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012336)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19990 AT5G19990 AT5G19990 AT5G20000
fragaria_vesca FvH4_1g03980
malus_domestica MD02G1226600.v1.1 MD07G1087400.v1.1
prunus_persica Prupe.7G237100_v2.0.a1
pyrus_communis pycom02g19560
rosa_chinensis RchiOBHm_Chr2g0089461
rosa_laevigata RLG00000016031
rosa_multiflora Rmu_sc0000197.1_g000006
rosa_roxburghii Rroxscaffold_2G00151910 Rroxscaffold_6G00403280
rosa_rugosa Rorug02G0001000
rosa_samantha Rh2AG046200 Rh2CG046600 Rh2DG046200
rosa_wichuraiana Rw2G003640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 62
Acc36I ACCTGC 1 cut(s) 62
AccB1I GGYRCC 1 cut(s) 902
AccIII TCCGGA 1 cut(s) 307
AciI CCGC 6 cut(s) 60, 72, 97, 142, 181, 887
AclWI GGATC 3 cut(s) 425, 613, 756
AcoI YGGCCR 1 cut(s) 552
AcsI RAATTY 2 cut(s) 791, 853
AcuI CTGAAG 3 cut(s) 218, 896, 957
AcyI GRCGYC 2 cut(s) 15, 903
AfiI CCNNNNNNNGG 2 cut(s) 136, 762
AgsI TTSAA 2 cut(s) 843, 922
AjnI CCWGG 4 cut(s) 135, 241, 554, 766
AjuI GAANNNNNNNTTGG 2 cut(s) 275, 307
AluBI AGCT 7 cut(s) 67, 127, 133, 190, 396, 670, 1054
AluI AGCT 7 cut(s) 67, 127, 133, 190, 396, 670, 1054
Alw21I GWGCWC 2 cut(s) 129, 192
Alw26I GTCTC 3 cut(s) 14, 819, 1019
AlwI GGATC 3 cut(s) 425, 613, 756
Ama87I CYCGRG 1 cut(s) 170
Aor13HI TCCGGA 1 cut(s) 307
AoxI GGCC 4 cut(s) 36, 552, 696, 764
ApeKI GCWGC 2 cut(s) 5, 415
ApoI RAATTY 2 cut(s) 791, 853
Asp700I GAANNNNTTC 1 cut(s) 462
AspLEI GCGC 2 cut(s) 905, 914
AspS9I GGNCC 2 cut(s) 139, 246
AsuHPI GGTGA 2 cut(s) 269, 503
AvaI CYCGRG 1 cut(s) 170
AvaII GGWCC 2 cut(s) 139, 246
BalI TGGCCA 1 cut(s) 554
BanI GGYRCC 1 cut(s) 902
BanII GRGCYC 3 cut(s) 96, 129, 192
BauI CACGAG 1 cut(s) 122
BbsI GAAGAC 2 cut(s) 155, 993
Bbv12I GWGCWC 2 cut(s) 129, 192
BbvCI CCTCAGC 1 cut(s) 761
BbvI GCAGC 1 cut(s) 402
BccI CCATC 5 cut(s) 373, 577, 680, 715, 991
BceAI ACGGC 2 cut(s) 23, 916
BciT130I CCWGG 4 cut(s) 137, 243, 556, 768
BcoDI GTCTC 3 cut(s) 14, 819, 1019
BfoI RGCGCY 2 cut(s) 906, 915
BfuAI ACCTGC 1 cut(s) 62
BisI GCNGC 3 cut(s) 6, 72, 416
BlpI GCTNAGC 1 cut(s) 177
BlsI GCNGC 3 cut(s) 7, 73, 417
Bme1390I CCNGG 4 cut(s) 137, 243, 556, 768
Bme18I GGWCC 2 cut(s) 139, 246
BmeT110I CYCGRG 1 cut(s) 170
BmgT120I GGNCC 2 cut(s) 139, 246
BmiI GGNNCC 6 cut(s) 95, 240, 247, 465, 523, 904
BmrFI CCNGG 4 cut(s) 137, 243, 556, 768
BpiI GAAGAC 2 cut(s) 155, 993
BpmI CTGGAG 2 cut(s) 113, 119
Bpu10I CCTNAGC 2 cut(s) 212, 761
Bpu1102I GCTNAGC 1 cut(s) 177
BpuEI CTTGAG 1 cut(s) 686
BsaHI GRCGYC 2 cut(s) 15, 903
BsaI GGTCTC 1 cut(s) 14
BsaJI CCNNGG 3 cut(s) 242, 555, 1008
BsaWI WCCGGW 1 cut(s) 307
BsaXI ACNNNNNCTCC 4 cut(s) 41, 71, 230, 260
Bsc4I CCNNNNNNNGG 2 cut(s) 136, 762
Bse1I ACTGG 1 cut(s) 687
Bse3DI GCAATG 2 cut(s) 394, 640
BseAI TCCGGA 1 cut(s) 307
BseBI CCWGG 4 cut(s) 137, 243, 556, 768
BseDI CCNNGG 3 cut(s) 242, 555, 1008
BseGI GGATG 3 cut(s) 304, 592, 691
BseLI CCNNNNNNNGG 2 cut(s) 136, 762
BseMI GCAATG 2 cut(s) 394, 640
BseMII CTCAG 5 cut(s) 191, 226, 752, 906, 947
BseNI ACTGG 1 cut(s) 687
BseRI GAGGAG 1 cut(s) 979
BseXI GCAGC 1 cut(s) 402
BseYI CCCAGC 1 cut(s) 819
BsgI GTGCAG 1 cut(s) 671
BshFI GGCC 4 cut(s) 38, 554, 698, 766
BshNI GGYRCC 1 cut(s) 902
BsiHKAI GWGCWC 2 cut(s) 129, 192
BsiHKCI CYCGRG 1 cut(s) 170
BsiSI CCGG 2 cut(s) 44, 308
BslFI GGGAC 3 cut(s) 653, 836, 1027
BslI CCNNNNNNNGG 2 cut(s) 136, 762
BsmAI GTCTC 3 cut(s) 14, 819, 1019
BsmBI CGTCTC 1 cut(s) 1019
BsmFI GGGAC 3 cut(s) 653, 836, 1027
BsmI GAATGC 1 cut(s) 213
BsnI GGCC 4 cut(s) 38, 554, 698, 766
Bso31I GGTCTC 1 cut(s) 14
BsoBI CYCGRG 1 cut(s) 170
Bsp1286I GDGCHC 3 cut(s) 96, 129, 192
Bsp13I TCCGGA 1 cut(s) 307
Bsp143I GATC 5 cut(s) 357, 430, 605, 748, 786
Bsp1720I GCTNAGC 1 cut(s) 177
BspACI CCGC 6 cut(s) 60, 72, 97, 142, 181, 887
BspANI GGCC 4 cut(s) 38, 554, 698, 766
BspCNI CTCAG 5 cut(s) 190, 225, 753, 907, 948
BspEI TCCGGA 1 cut(s) 307
BspLI GGNNCC 6 cut(s) 95, 240, 247, 465, 523, 904
BspMI ACCTGC 1 cut(s) 62
BspPI GGATC 3 cut(s) 425, 613, 756
BspT107I GGYRCC 1 cut(s) 902
BspTNI GGTCTC 1 cut(s) 14
BsrDI GCAATG 2 cut(s) 394, 640
BsrI ACTGG 1 cut(s) 687
BssECI CCNNGG 3 cut(s) 242, 555, 1008
BssMI GATC 5 cut(s) 357, 430, 605, 748, 786
BssNI GRCGYC 2 cut(s) 15, 903
BssSI CACGAG 1 cut(s) 122
BssT1I CCWWGG 1 cut(s) 1008
Bst2BI CACGAG 1 cut(s) 122
Bst2UI CCWGG 4 cut(s) 137, 243, 556, 768
Bst6I CTCTTC 1 cut(s) 804
BstACI GRCGYC 2 cut(s) 15, 903
BstC8I GCNNGC 2 cut(s) 69, 613
BstDEI CTNAG 5 cut(s) 177, 212, 761, 915, 956
BstF5I GGATG 3 cut(s) 304, 592, 691
BstH2I RGCGCY 2 cut(s) 906, 915
BstHHI GCGC 2 cut(s) 905, 914
BstKTI GATC 5 cut(s) 360, 433, 608, 751, 789
BstMAI GTCTC 3 cut(s) 14, 819, 1019
BstMBI GATC 5 cut(s) 357, 430, 605, 748, 786
BstMWI GCNNNNNNNGC 5 cut(s) 68, 187, 393, 909, 911
BstNI CCWGG 4 cut(s) 137, 243, 556, 768
BstNSI RCATGY 2 cut(s) 566, 977
BstSCI CCNGG 4 cut(s) 135, 241, 554, 766
BstV1I GCAGC 1 cut(s) 402
BstV2I GAAGAC 2 cut(s) 155, 993
BstX2I RGATCY 2 cut(s) 430, 605
BstXI CCANNNNNNTGG 1 cut(s) 686
BstYI RGATCY 2 cut(s) 430, 605
BsuRI GGCC 4 cut(s) 38, 554, 698, 766
BtsCI GGATG 3 cut(s) 304, 592, 691
BtsI GCAGTG 1 cut(s) 634
BtsIMutI CAGTG 3 cut(s) 634, 933, 953
BveI ACCTGC 1 cut(s) 62
Cac8I GCNNGC 2 cut(s) 69, 613
CfoI GCGC 2 cut(s) 905, 914
Cfr13I GGNCC 2 cut(s) 139, 246
CseI GACGC 2 cut(s) 4, 780
CviAII CATG 4 cut(s) 274, 563, 616, 974
DdeI CTNAG 5 cut(s) 177, 212, 761, 915, 956
DinI GGCGCC 1 cut(s) 904
DpnI GATC 5 cut(s) 359, 432, 607, 750, 788
DpnII GATC 5 cut(s) 357, 430, 605, 748, 786
EaeI YGGCCR 1 cut(s) 552
Eam1104I CTCTTC 1 cut(s) 804
EarI CTCTTC 1 cut(s) 804
EciI GGCGGA 3 cut(s) 49, 86, 131
Ecl136II GAGCTC 2 cut(s) 127, 190
Eco130I CCWWGG 1 cut(s) 1008
Eco147I AGGCCT 1 cut(s) 698
Eco24I GRGCYC 3 cut(s) 96, 129, 192
Eco31I GGTCTC 1 cut(s) 14
Eco32I GATATC 1 cut(s) 349
Eco47I GGWCC 2 cut(s) 139, 246
Eco53kI GAGCTC 2 cut(s) 127, 190
Eco57I CTGAAG 3 cut(s) 218, 896, 957
Eco88I CYCGRG 1 cut(s) 170
EcoICRI GAGCTC 2 cut(s) 127, 190
EcoO109I RGGNCCY 1 cut(s) 246
EcoRII CCWGG 4 cut(s) 135, 241, 554, 766
EcoRV GATATC 1 cut(s) 349
EcoT14I CCWWGG 1 cut(s) 1008
EcoT38I GRGCYC 3 cut(s) 96, 129, 192
EgeI GGCGCC 1 cut(s) 904
EheI GGCGCC 1 cut(s) 904
ErhI CCWWGG 1 cut(s) 1008
Esp3I CGTCTC 1 cut(s) 1019
FaeI CATG 4 cut(s) 277, 566, 619, 977
FaqI GGGAC 3 cut(s) 653, 836, 1027
FatI CATG 4 cut(s) 273, 562, 615, 973
FauNDI CATATG 1 cut(s) 478
Fnu4HI GCNGC 3 cut(s) 6, 72, 416
FokI GGATG 3 cut(s) 291, 599, 698
FriOI GRGCYC 3 cut(s) 96, 129, 192
Fsp4HI GCNGC 3 cut(s) 6, 72, 416
GlaI GCGC 2 cut(s) 904, 913
GluI GCNGC 3 cut(s) 6, 72, 416
GsaI CCCAGC 1 cut(s) 823
GsuI CTGGAG 2 cut(s) 113, 119
HaeII RGCGCY 2 cut(s) 906, 915
HaeIII GGCC 4 cut(s) 38, 554, 698, 766
HapII CCGG 2 cut(s) 44, 308
HgaI GACGC 2 cut(s) 4, 780
HhaI GCGC 2 cut(s) 905, 914
Hin1I GRCGYC 2 cut(s) 15, 903
Hin1II CATG 4 cut(s) 277, 566, 619, 977
Hin6I GCGC 2 cut(s) 903, 912
HinP1I GCGC 2 cut(s) 903, 912
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HinfI GANTC 4 cut(s) 168, 470, 620, 812
HpaII CCGG 2 cut(s) 44, 308
HphI GGTGA 2 cut(s) 269, 503
Hpy166II GTNNAC 1 cut(s) 268
Hpy188I TCNGA 4 cut(s) 447, 504, 720, 831
Hpy188III TCNNGA 9 cut(s) 19, 122, 198, 236, 308, 467, 525, 746, 843
Hpy8I GTNNAC 1 cut(s) 268
Hpy99I CGWCG 3 cut(s) 14, 20, 35
HpyAV CCTTC 4 cut(s) 305, 512, 916, 1015
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 4 cut(s) 652, 933, 953, 973
HpyF10VI GCNNNNNNNGC 5 cut(s) 68, 187, 393, 909, 911
HpyF3I CTNAG 5 cut(s) 177, 212, 761, 915, 956
HpySE526I ACGT 1 cut(s) 270
Hsp92I GRCGYC 2 cut(s) 15, 903
Hsp92II CATG 4 cut(s) 277, 566, 619, 977
HspAI GCGC 2 cut(s) 903, 912
KasI GGCGCC 1 cut(s) 902
Kpn2I TCCGGA 1 cut(s) 307
Kzo9I GATC 5 cut(s) 357, 430, 605, 748, 786
LmnI GCTCC 6 cut(s) 62, 99, 132, 138, 238, 571
Lsp1109I GCAGC 1 cut(s) 402
MaeII ACGT 1 cut(s) 270
MaeIII GTNAC 1 cut(s) 976
MalI GATC 5 cut(s) 359, 432, 607, 750, 788
MboI GATC 5 cut(s) 357, 430, 605, 748, 786
MflI RGATCY 2 cut(s) 430, 605
MhlI GDGCHC 3 cut(s) 96, 129, 192
MlsI TGGCCA 1 cut(s) 554
MluCI AATT 5 cut(s) 193, 591, 791, 853, 867
MluNI TGGCCA 1 cut(s) 554
Mly113I GGCGCC 1 cut(s) 903
MlyI GAGTC 2 cut(s) 162, 821
MmeI TCCRAC 1 cut(s) 136
Mox20I TGGCCA 1 cut(s) 554
MroI TCCGGA 1 cut(s) 307
MroXI GAANNNNTTC 1 cut(s) 462
MscI TGGCCA 1 cut(s) 554
MseI TTAA 3 cut(s) 297, 675, 857
MslI CAYNNNNRTG 1 cut(s) 581
Msp20I TGGCCA 1 cut(s) 554
MspA1I CMGCKG 1 cut(s) 181
MspI CCGG 2 cut(s) 44, 308
MspR9I CCNGG 4 cut(s) 137, 243, 556, 768
Mva1269I GAATGC 1 cut(s) 213
MvaI CCWGG 4 cut(s) 137, 243, 556, 768
MwoI GCNNNNNNNGC 5 cut(s) 68, 187, 393, 909, 911
NarI GGCGCC 1 cut(s) 903
NdeI CATATG 1 cut(s) 478
NdeII GATC 5 cut(s) 357, 430, 605, 748, 786
NlaIII CATG 4 cut(s) 277, 566, 619, 977
NlaIV GGNNCC 6 cut(s) 95, 240, 247, 465, 523, 904
NmeAIII GCCGAG 1 cut(s) 63
NspI RCATGY 2 cut(s) 566, 977
PaeR7I CTCGAG 1 cut(s) 170
PaqCI CACCTGC 1 cut(s) 62
PceI AGGCCT 1 cut(s) 698
PctI GAATGC 1 cut(s) 213
PdmI GAANNNNTTC 1 cut(s) 462
PfeI GAWTC 2 cut(s) 470, 620
PkrI GCNGC 3 cut(s) 7, 73, 417
PleI GAGTC 2 cut(s) 162, 820
PluTI GGCGCC 1 cut(s) 906
PpsI GAGTC 2 cut(s) 162, 820
PpuMI RGGWCCY 1 cut(s) 246
Psp124BI GAGCTC 2 cut(s) 129, 192
Psp5II RGGWCCY 1 cut(s) 246
Psp6I CCWGG 4 cut(s) 135, 241, 554, 766
PspFI CCCAGC 1 cut(s) 819
PspGI CCWGG 4 cut(s) 135, 241, 554, 766
PspN4I GGNNCC 6 cut(s) 95, 240, 247, 465, 523, 904
PspPI GGNCC 2 cut(s) 139, 246
PspPPI RGGWCCY 1 cut(s) 246
PspXI VCTCGAGB 1 cut(s) 170
PsuI RGATCY 2 cut(s) 430, 605
RseI CAYNNNNRTG 1 cut(s) 581
SacI GAGCTC 2 cut(s) 129, 192
SaqAI TTAA 3 cut(s) 297, 675, 857
SatI GCNGC 3 cut(s) 6, 72, 416
Sau3AI GATC 5 cut(s) 357, 430, 605, 748, 786
Sau96I GGNCC 2 cut(s) 139, 246
SchI GAGTC 2 cut(s) 162, 821
ScrFI CCNGG 4 cut(s) 137, 243, 556, 768
SduI GDGCHC 3 cut(s) 96, 129, 192
SfoI GGCGCC 1 cut(s) 904
Sfr274I CTCGAG 1 cut(s) 170
SinI GGWCC 2 cut(s) 139, 246
SlaI CTCGAG 1 cut(s) 170
SmiMI CAYNNNNRTG 1 cut(s) 581
SmlI CTYRAG 2 cut(s) 170, 665
SmoI CTYRAG 2 cut(s) 170, 665
Sse9I AATT 5 cut(s) 193, 591, 791, 853, 867
SseBI AGGCCT 1 cut(s) 698
SsiI CCGC 6 cut(s) 60, 72, 97, 142, 181, 887
SspDI GGCGCC 1 cut(s) 902
SstI GAGCTC 2 cut(s) 129, 192
StuI AGGCCT 1 cut(s) 698
StyD4I CCNGG 4 cut(s) 135, 241, 554, 766
StyI CCWWGG 1 cut(s) 1008
TaiI ACGT 1 cut(s) 273
TaqI TCGA 5 cut(s) 18, 33, 166, 171, 789
TasI AATT 5 cut(s) 193, 591, 791, 853, 867
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 2 cut(s) 470, 620
Tru1I TTAA 3 cut(s) 297, 675, 857
Tru9I TTAA 3 cut(s) 297, 675, 857
TscAI CASTG 3 cut(s) 634, 940, 960
TseI GCWGC 2 cut(s) 5, 415
TspDTI ATGAA 7 cut(s) 293, 395, 464, 603, 866, 911, 1031
TspGWI ACGGA 1 cut(s) 1043
TspRI CASTG 3 cut(s) 634, 940, 960
VpaK11BI GGWCC 2 cut(s) 139, 246
XapI RAATTY 2 cut(s) 791, 853
XceI RCATGY 2 cut(s) 566, 977
XhoI CTCGAG 1 cut(s) 170
XmnI GAANNNNTTC 1 cut(s) 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.