Rh2DG046200

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0012336
Physical Location & Seq
Reverse (-)
3275208 .. 3277815
2608 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG046200.1

Sequence Viewer

Length: 987 bp
ATGGGAAAGAACAAGGTTTTGGTTAAGGTTCATCCGGAAGGGAAGTATGTGGTTGATATTGATAAGAACATTGATATCACAAAGATCACACCTTCTACAAGAGTGGCTCTACGCAATGACAGCTATGTTCTTCATTTAGTGCTGCCAAGCAAAGTAGATCCTCTCGTCAATCTGATGAAAGTGGAAAAGGTTCCAGATTCTACATATGATATGATTGGTGGTCTGGATCAGCAGATTAAAGAAATCAAAGAGGTCATTGAACTTCCAATTAAACATCCTGAATTGTTTGAAAGTCTTGGAATAGCTCAGCCAAAGGGAGTCCTGCTTTATGGTCCCCCCGGCACTGGCAAAACCTTGTTGGCTAGGGCCGTGGCTCATCACACTGACTGTACTTTCATCAGGGTTTCTGGTTCAGAGTTGGTTCAGAAATACATTGGGGAAGGTTCCCGAATGGTTAGAGAACTTTTCGTAATGGCCAGGGAACATGCTCCATCTATCATTTTTATGGATGAAATCGATAGTATTGGATCTGCTCGCATGGAATCTGGCAGTGGCAATGGGGACAGCGAGGTGCAGAGGACTATGCTTGAGCTTCTTAACCAACTGGATGGATTTGAGGCCTCAAACAAAATCAAGGTTTTGATGGCTACAAATCGTATTGATATTCTGGATCAAGCCCTGCTGAGGCCAGGACGCATAGACAGAAAGATCGAATTTCCCAACCCTAACGAAGAGTCTCGTTGGGACATTCTGAAAATCCATTCAAGAAGAATGAATTTAATGCGTGGAATTGACCTGAAGAAGATTGCGGAGAAAATGAACGGCGCCTCTGGTGCTGAGTTGAAGGCGGTTTGCACTGAAGCAGGAATGTTTGCACTGAGGGAGAGGAGAGTGCATGTAACCCAAGAAGACTTTGAGATGGCAGTTGCCAAGGTTATGAAGAAGGAGACGGAGAAGAATATGTCCCTGCGTAAGCTGTGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

328

Amino Acids

36.93

Weight (kDa)

8.84

Isoelectric Point (pI)

38.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prot_ATP_ID_OB_C PF16450 2 - 49 8.7e-10 Proteasomal ATPase OB C-terminal domain
AAA_5 PF07728 106 - 178 7.4e-06 AAA domain (dynein-related subfamily)
AAA PF00004 107 - 240 3.2e-44 ATPase family associated with various cellular activities (AAA)
AAA_2 PF07724 107 - 200 6.4e-06 AAA domain (Cdc48 subfamily)
AAA_lid_PRS2_C PF23902 245 - 314 6.7e-06 PRS2 AAA+ lid C-terminal domain
AAA_lid_3 PF17862 264 - 306 1.1e-14 AAA+ lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012336)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19990 AT5G19990 AT5G19990 AT5G20000
fragaria_vesca FvH4_1g03980
malus_domestica MD02G1226600.v1.1 MD07G1087400.v1.1
prunus_persica Prupe.7G237100_v2.0.a1
pyrus_communis pycom02g19560
rosa_chinensis RchiOBHm_Chr2g0089461
rosa_laevigata RLG00000016031
rosa_multiflora Rmu_sc0000197.1_g000006
rosa_roxburghii Rroxscaffold_2G00151910 Rroxscaffold_6G00403280
rosa_rugosa Rorug02G0001000
rosa_samantha Rh2AG046200 Rh2CG046600 Rh2DG046200
rosa_wichuraiana Rw2G003640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 824
AccIII TCCGGA 1 cut(s) 34
AciI CCGC 2 cut(s) 809, 848
AclWI GGATC 4 cut(s) 152, 234, 535, 678
AcoI YGGCCR 1 cut(s) 474
AcsI RAATTY 2 cut(s) 713, 775
AcuI CTGAAG 2 cut(s) 818, 879
AcyI GRCGYC 1 cut(s) 825
AfaI GTAC 1 cut(s) 391
AfiI CCNNNNNNNGG 2 cut(s) 344, 684
AgsI TTSAA 4 cut(s) 260, 290, 765, 844
AjnI CCWGG 2 cut(s) 476, 688
AjuI GAANNNNNNNTTGG 1 cut(s) 34
AluBI AGCT 4 cut(s) 123, 305, 592, 976
AluI AGCT 4 cut(s) 123, 305, 592, 976
Alw26I GTCTC 2 cut(s) 741, 941
AlwI GGATC 4 cut(s) 152, 234, 535, 678
Aor13HI TCCGGA 1 cut(s) 34
AoxI GGCC 4 cut(s) 366, 474, 618, 686
ApeKI GCWGC 1 cut(s) 142
ApoI RAATTY 2 cut(s) 713, 775
Asp700I GAANNNNTTC 1 cut(s) 189
AspLEI GCGC 1 cut(s) 827
AspS9I GGNCC 2 cut(s) 332, 366
AsuC2I CCSGG 1 cut(s) 339
AvaII GGWCC 1 cut(s) 332
BalI TGGCCA 1 cut(s) 476
BanI GGYRCC 1 cut(s) 824
BbsI GAAGAC 1 cut(s) 915
BbvCI CCTCAGC 1 cut(s) 683
BbvI GCAGC 1 cut(s) 129
BccI CCATC 4 cut(s) 499, 602, 637, 913
BceAI ACGGC 2 cut(s) 353, 838
BciT130I CCWGG 2 cut(s) 478, 690
BcnI CCSGG 1 cut(s) 339
BcoDI GTCTC 2 cut(s) 741, 941
BfaI CTAG 1 cut(s) 363
BfoI RGCGCY 1 cut(s) 828
BisI GCNGC 1 cut(s) 143
BlpI GCTNAGC 1 cut(s) 306
BlsI GCNGC 1 cut(s) 144
Bme1390I CCNGG 3 cut(s) 339, 478, 690
Bme18I GGWCC 1 cut(s) 332
BmgT120I GGNCC 2 cut(s) 332, 366
BmiI GGNNCC 4 cut(s) 192, 334, 445, 826
BmrFI CCNGG 3 cut(s) 339, 478, 690
BpiI GAAGAC 1 cut(s) 915
Bpu10I CCTNAGC 1 cut(s) 683
Bpu1102I GCTNAGC 1 cut(s) 306
BpuEI CTTGAG 1 cut(s) 608
BpuMI CCSGG 1 cut(s) 339
Bsa29I ATCGAT 1 cut(s) 516
BsaHI GRCGYC 1 cut(s) 825
BsaJI CCNNGG 4 cut(s) 337, 369, 477, 930
BsaWI WCCGGW 1 cut(s) 34
Bsc4I CCNNNNNNNGG 2 cut(s) 344, 684
Bse1I ACTGG 2 cut(s) 349, 609
Bse3DI GCAATG 2 cut(s) 121, 562
BseAI TCCGGA 1 cut(s) 34
BseBI CCWGG 2 cut(s) 478, 690
BseCI ATCGAT 1 cut(s) 516
BseDI CCNNGG 4 cut(s) 337, 369, 477, 930
BseGI GGATG 4 cut(s) 31, 274, 514, 613
BseLI CCNNNNNNNGG 2 cut(s) 344, 684
BseMI GCAATG 2 cut(s) 121, 562
BseMII CTCAG 4 cut(s) 320, 674, 828, 869
BseNI ACTGG 2 cut(s) 349, 609
BseRI GAGGAG 1 cut(s) 901
BseXI GCAGC 1 cut(s) 129
BsgI GTGCAG 1 cut(s) 593
BshFI GGCC 4 cut(s) 368, 476, 620, 688
BshNI GGYRCC 1 cut(s) 824
BshVI ATCGAT 1 cut(s) 516
BsiSI CCGG 2 cut(s) 35, 339
BslFI GGGAC 4 cut(s) 318, 575, 758, 949
BslI CCNNNNNNNGG 2 cut(s) 344, 684
BsmAI GTCTC 2 cut(s) 741, 941
BsmBI CGTCTC 1 cut(s) 941
BsmFI GGGAC 4 cut(s) 318, 575, 758, 949
BsnI GGCC 4 cut(s) 368, 476, 620, 688
Bsp13I TCCGGA 1 cut(s) 34
Bsp143I GATC 6 cut(s) 84, 157, 226, 527, 670, 708
Bsp1720I GCTNAGC 1 cut(s) 306
BspACI CCGC 2 cut(s) 809, 848
BspANI GGCC 4 cut(s) 368, 476, 620, 688
BspCNI CTCAG 4 cut(s) 319, 675, 829, 870
BspDI ATCGAT 1 cut(s) 516
BspEI TCCGGA 1 cut(s) 34
BspLI GGNNCC 4 cut(s) 192, 334, 445, 826
BspPI GGATC 4 cut(s) 152, 234, 535, 678
BspT107I GGYRCC 1 cut(s) 824
BsrDI GCAATG 2 cut(s) 121, 562
BsrI ACTGG 2 cut(s) 349, 609
BssECI CCNNGG 4 cut(s) 337, 369, 477, 930
BssMI GATC 6 cut(s) 84, 157, 226, 527, 670, 708
BssNI GRCGYC 1 cut(s) 825
BssT1I CCWWGG 1 cut(s) 930
Bst2UI CCWGG 2 cut(s) 478, 690
Bst4CI ACNGT 1 cut(s) 389
Bst6I CTCTTC 1 cut(s) 726
BstACI GRCGYC 1 cut(s) 825
BstC8I GCNNGC 1 cut(s) 535
BstDEI CTNAG 4 cut(s) 306, 683, 837, 878
BstDSI CCRYGG 1 cut(s) 369
BstF5I GGATG 4 cut(s) 31, 274, 514, 613
BstH2I RGCGCY 1 cut(s) 828
BstHHI GCGC 1 cut(s) 827
BstKTI GATC 6 cut(s) 87, 160, 229, 530, 673, 711
BstMAI GTCTC 2 cut(s) 741, 941
BstMBI GATC 6 cut(s) 84, 157, 226, 527, 670, 708
BstMWI GCNNNNNNNGC 2 cut(s) 120, 833
BstNI CCWGG 2 cut(s) 478, 690
BstNSI RCATGY 2 cut(s) 488, 899
BstSCI CCNGG 3 cut(s) 337, 476, 688
BstV1I GCAGC 1 cut(s) 129
BstV2I GAAGAC 1 cut(s) 915
BstX2I RGATCY 2 cut(s) 157, 527
BstXI CCANNNNNNTGG 1 cut(s) 608
BstYI RGATCY 2 cut(s) 157, 527
Bsu15I ATCGAT 1 cut(s) 516
BsuRI GGCC 4 cut(s) 368, 476, 620, 688
BsuTUI ATCGAT 1 cut(s) 516
BtgI CCRYGG 1 cut(s) 369
BtsCI GGATG 4 cut(s) 31, 274, 514, 613
BtsI GCAGTG 1 cut(s) 556
BtsIMutI CAGTG 5 cut(s) 342, 381, 556, 855, 875
Cac8I GCNNGC 1 cut(s) 535
CfoI GCGC 1 cut(s) 827
Cfr13I GGNCC 2 cut(s) 332, 366
ClaI ATCGAT 1 cut(s) 516
CseI GACGC 1 cut(s) 702
Csp6I GTAC 1 cut(s) 390
CviAII CATG 3 cut(s) 485, 538, 896
CviQI GTAC 1 cut(s) 390
DdeI CTNAG 4 cut(s) 306, 683, 837, 878
DinI GGCGCC 1 cut(s) 826
DpnI GATC 6 cut(s) 86, 159, 228, 529, 672, 710
DpnII GATC 6 cut(s) 84, 157, 226, 527, 670, 708
EaeI YGGCCR 1 cut(s) 474
Eam1104I CTCTTC 1 cut(s) 726
EarI CTCTTC 1 cut(s) 726
Eco130I CCWWGG 1 cut(s) 930
Eco147I AGGCCT 1 cut(s) 620
Eco32I GATATC 1 cut(s) 76
Eco47I GGWCC 1 cut(s) 332
Eco57I CTGAAG 2 cut(s) 818, 879
EcoRII CCWGG 2 cut(s) 476, 688
EcoRV GATATC 1 cut(s) 76
EcoT14I CCWWGG 1 cut(s) 930
EgeI GGCGCC 1 cut(s) 826
EheI GGCGCC 1 cut(s) 826
ErhI CCWWGG 1 cut(s) 930
Esp3I CGTCTC 1 cut(s) 941
FaeI CATG 3 cut(s) 488, 541, 899
FaqI GGGAC 4 cut(s) 318, 575, 758, 949
FatI CATG 3 cut(s) 484, 537, 895
FauNDI CATATG 1 cut(s) 205
Fnu4HI GCNGC 1 cut(s) 143
FokI GGATG 4 cut(s) 18, 261, 521, 620
Fsp4HI GCNGC 1 cut(s) 143
FspBI CTAG 1 cut(s) 363
GlaI GCGC 1 cut(s) 826
GluI GCNGC 1 cut(s) 143
HaeII RGCGCY 1 cut(s) 828
HaeIII GGCC 4 cut(s) 368, 476, 620, 688
HapII CCGG 2 cut(s) 35, 339
HgaI GACGC 1 cut(s) 702
HhaI GCGC 1 cut(s) 827
Hin1I GRCGYC 1 cut(s) 825
Hin1II CATG 3 cut(s) 488, 541, 899
Hin6I GCGC 1 cut(s) 825
HinP1I GCGC 1 cut(s) 825
HinfI GANTC 4 cut(s) 197, 318, 542, 734
HpaII CCGG 2 cut(s) 35, 339
Hpy188I TCNGA 4 cut(s) 174, 415, 426, 753
Hpy188III TCNNGA 7 cut(s) 35, 194, 224, 278, 447, 668, 765
HpyAV CCTTC 5 cut(s) 32, 102, 434, 838, 937
HpyCH4III ACNGT 1 cut(s) 389
HpyCH4V TGCA 4 cut(s) 574, 855, 875, 895
HpyF10VI GCNNNNNNNGC 2 cut(s) 120, 833
HpyF3I CTNAG 4 cut(s) 306, 683, 837, 878
Hsp92I GRCGYC 1 cut(s) 825
Hsp92II CATG 3 cut(s) 488, 541, 899
HspAI GCGC 1 cut(s) 825
KasI GGCGCC 1 cut(s) 824
Kpn2I TCCGGA 1 cut(s) 34
Kzo9I GATC 6 cut(s) 84, 157, 226, 527, 670, 708
LmnI GCTCC 1 cut(s) 493
Lsp1109I GCAGC 1 cut(s) 129
MaeI CTAG 1 cut(s) 363
MaeIII GTNAC 1 cut(s) 898
MalI GATC 6 cut(s) 86, 159, 228, 529, 672, 710
MboI GATC 6 cut(s) 84, 157, 226, 527, 670, 708
MboII GAAGA 8 cut(s) 122, 743, 780, 811, 814, 920, 952, 967
MflI RGATCY 2 cut(s) 157, 527
MlsI TGGCCA 1 cut(s) 476
MluCI AATT 5 cut(s) 267, 281, 713, 775, 789
MluNI TGGCCA 1 cut(s) 476
Mly113I GGCGCC 1 cut(s) 825
MlyI GAGTC 2 cut(s) 327, 743
Mox20I TGGCCA 1 cut(s) 476
MroI TCCGGA 1 cut(s) 34
MroXI GAANNNNTTC 1 cut(s) 189
MscI TGGCCA 1 cut(s) 476
MseI TTAA 5 cut(s) 24, 237, 270, 597, 779
MslI CAYNNNNRTG 1 cut(s) 503
Msp20I TGGCCA 1 cut(s) 476
MspI CCGG 2 cut(s) 35, 339
MspR9I CCNGG 3 cut(s) 339, 478, 690
MvaI CCWGG 2 cut(s) 478, 690
MwoI GCNNNNNNNGC 2 cut(s) 120, 833
NarI GGCGCC 1 cut(s) 825
NciI CCSGG 1 cut(s) 339
NdeI CATATG 1 cut(s) 205
NdeII GATC 6 cut(s) 84, 157, 226, 527, 670, 708
NlaIII CATG 3 cut(s) 488, 541, 899
NlaIV GGNNCC 4 cut(s) 192, 334, 445, 826
NspI RCATGY 2 cut(s) 488, 899
PceI AGGCCT 1 cut(s) 620
PdmI GAANNNNTTC 1 cut(s) 189
PfeI GAWTC 2 cut(s) 197, 542
PkrI GCNGC 1 cut(s) 144
PleI GAGTC 2 cut(s) 326, 742
PluTI GGCGCC 1 cut(s) 828
PpsI GAGTC 2 cut(s) 326, 742
Psp6I CCWGG 2 cut(s) 476, 688
PspGI CCWGG 2 cut(s) 476, 688
PspN4I GGNNCC 4 cut(s) 192, 334, 445, 826
PspPI GGNCC 2 cut(s) 332, 366
PsuI RGATCY 2 cut(s) 157, 527
RsaI GTAC 1 cut(s) 391
RsaNI GTAC 1 cut(s) 390
RseI CAYNNNNRTG 1 cut(s) 503
SaqAI TTAA 5 cut(s) 24, 237, 270, 597, 779
SatI GCNGC 1 cut(s) 143
Sau3AI GATC 6 cut(s) 84, 157, 226, 527, 670, 708
Sau96I GGNCC 2 cut(s) 332, 366
SchI GAGTC 2 cut(s) 327, 743
ScrFI CCNGG 3 cut(s) 339, 478, 690
SfoI GGCGCC 1 cut(s) 826
SinI GGWCC 1 cut(s) 332
SmiMI CAYNNNNRTG 1 cut(s) 503
SmlI CTYRAG 1 cut(s) 587
SmoI CTYRAG 1 cut(s) 587
Sse9I AATT 5 cut(s) 267, 281, 713, 775, 789
SseBI AGGCCT 1 cut(s) 620
SsiI CCGC 2 cut(s) 809, 848
SspDI GGCGCC 1 cut(s) 824
SspMI CTAG 1 cut(s) 363
StuI AGGCCT 1 cut(s) 620
StyD4I CCNGG 3 cut(s) 337, 476, 688
StyI CCWWGG 1 cut(s) 930
TaaI ACNGT 1 cut(s) 389
TaqI TCGA 2 cut(s) 516, 711
TasI AATT 5 cut(s) 267, 281, 713, 775, 789
TatI WGTACW 1 cut(s) 389
TfiI GAWTC 2 cut(s) 197, 542
Tru1I TTAA 5 cut(s) 24, 237, 270, 597, 779
Tru9I TTAA 5 cut(s) 24, 237, 270, 597, 779
TscAI CASTG 5 cut(s) 349, 388, 556, 862, 882
TseI GCWGC 1 cut(s) 142
TspDTI ATGAA 8 cut(s) 20, 122, 191, 385, 525, 788, 833, 953
TspGWI ACGGA 1 cut(s) 965
TspRI CASTG 5 cut(s) 349, 388, 556, 862, 882
VpaK11BI GGWCC 1 cut(s) 332
XapI RAATTY 2 cut(s) 713, 775
XceI RCATGY 2 cut(s) 488, 899
XmnI GAANNNNTTC 1 cut(s) 189
XspI CTAG 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.